Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99991 * 2 1 4 4 C 1.53002 * 109.46705 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47086 * 65.00495 * 4 3 2 6 6 C 1.46503 * 119.99869 * 269.99690 * 5 4 3 7 7 C 1.50699 * 109.46971 * 270.00216 * 6 5 4 8 8 H 1.07997 * 119.99957 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99837 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00345 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47227 * 59.99423 * 11 9 7 13 13 H 1.48498 * 109.47608 * 179.97438 * 11 9 7 14 14 H 1.48508 * 109.46801 * 300.00102 * 11 9 7 15 15 C 1.34770 * 120.00127 * 89.99481 * 5 4 3 16 16 O 1.21594 * 119.99706 * 180.02562 * 15 5 4 17 17 N 1.34773 * 120.00381 * 0.02562 * 15 5 4 18 18 C 1.39944 * 120.00418 * 184.59525 * 17 15 5 19 19 C 1.38891 * 120.06778 * 324.89454 * 18 17 15 20 20 C 1.38095 * 119.92880 * 180.02562 * 19 18 17 21 21 C 1.38304 * 120.07023 * 359.71653 * 20 19 18 22 22 C 1.38266 * 120.13802 * 0.55405 * 21 20 19 23 23 C 1.50699 * 119.96398 * 179.72227 * 22 21 20 24 24 N 1.46897 * 109.47217 * 269.72683 * 23 22 21 25 25 C 1.46905 * 111.00028 * 66.04709 * 24 23 22 26 26 C 1.46900 * 111.00171 * 189.99949 * 24 23 22 27 27 C 1.38136 * 120.06860 * 359.44983 * 22 21 20 28 28 H 1.09001 * 109.47350 * 59.99257 * 1 2 3 29 29 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46812 * 299.99525 * 1 2 3 31 31 H 1.09004 * 109.46772 * 60.00443 * 3 2 1 32 32 H 1.09001 * 109.47229 * 300.00189 * 3 2 1 33 33 H 1.08990 * 109.47133 * 305.00050 * 4 3 2 34 34 H 1.09000 * 109.47033 * 184.99879 * 4 3 2 35 35 H 1.09002 * 109.47010 * 29.99974 * 6 5 4 36 36 H 1.08997 * 109.47392 * 149.99786 * 6 5 4 37 37 H 0.97000 * 120.00584 * 180.02562 * 10 9 7 38 38 H 0.97004 * 119.99651 * 4.58824 * 17 15 5 39 39 H 1.07994 * 120.03632 * 359.97438 * 19 18 17 40 40 H 1.07995 * 119.96684 * 179.97438 * 20 19 18 41 41 H 1.07993 * 119.93102 * 180.29600 * 21 20 19 42 42 H 1.08997 * 109.46972 * 149.72849 * 23 22 21 43 43 H 1.08999 * 109.47177 * 29.72670 * 23 22 21 44 44 H 1.09001 * 109.46945 * 183.95064 * 25 24 23 45 45 H 1.09003 * 109.47183 * 63.95168 * 25 24 23 46 46 H 1.09000 * 109.47022 * 303.95739 * 25 24 23 47 47 H 1.09005 * 109.47327 * 300.00319 * 26 24 23 48 48 H 1.09001 * 109.47201 * 60.00077 * 26 24 23 49 49 H 1.08999 * 109.47584 * 180.02562 * 26 24 23 50 50 H 1.08001 * 120.02977 * 180.25266 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5009 -1.2979 -0.9451 8 1 6.2197 -0.5460 -0.6546 9 6 5.8605 -2.6289 -0.9529 10 7 4.9853 -3.5445 -1.3071 11 14 7.5908 -3.1319 -0.4605 12 1 7.8545 -2.6973 0.9348 13 1 7.7220 -4.6083 -0.5517 14 1 8.5713 -2.4900 -1.3726 15 6 4.2614 1.3337 -2.3218 16 8 4.6263 0.8189 -3.3612 17 7 4.1428 2.6736 -2.2388 18 6 4.3460 3.4658 -3.3745 19 6 5.3013 3.1021 -4.3148 20 6 5.4998 3.8862 -5.4341 21 6 4.7446 5.0294 -5.6221 22 6 3.7967 5.3972 -4.6851 23 6 2.9803 6.6471 -4.8909 24 7 3.6685 7.7887 -4.2735 25 6 4.9317 8.0786 -4.9650 26 6 2.8005 8.9734 -4.2441 27 6 3.5934 4.6172 -3.5633 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8463 0.8901 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8408 34 1 3.9786 2.1764 0.0889 35 1 3.3852 -1.3630 -0.6735 36 1 3.9119 -1.2115 -2.3670 37 1 5.2381 -4.4809 -1.3123 38 1 3.9164 3.0890 -1.3919 39 1 5.8888 2.2075 -4.1704 40 1 6.2427 3.6042 -6.1654 41 1 4.8984 5.6384 -6.5006 42 1 2.0006 6.5210 -4.4301 43 1 2.8590 6.8301 -5.9585 44 1 5.4542 8.8819 -4.4456 45 1 4.7229 8.3844 -5.9903 46 1 5.5554 7.1846 -4.9725 47 1 2.5197 9.2435 -5.2621 48 1 1.9032 8.7522 -3.6662 49 1 3.3347 9.8039 -3.7825 50 1 2.8500 4.9029 -2.8338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610540780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = -25.195724 kcal Electronic energy + Delta-G solvation = -29369.882396 eV Core-core repulsion = 25398.169188 eV Total energy + Delta-G solvation = -3971.713208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31314 -39.00354 -37.66433 -37.04216 -34.93763 -34.30997 -32.55225 -31.52384 -29.61515 -29.53676 -27.80633 -26.94178 -26.70395 -25.92938 -23.27865 -22.81898 -22.75010 -21.82184 -20.93103 -19.11320 -17.87946 -16.83160 -16.44328 -16.20837 -15.95498 -15.74022 -15.65299 -15.50845 -15.00861 -14.90348 -14.63100 -14.60865 -14.04387 -13.88067 -13.46150 -13.35389 -12.79296 -12.62763 -12.57909 -12.27934 -12.25425 -12.06032 -11.99215 -11.93013 -11.70758 -11.67047 -11.36971 -11.21498 -10.94883 -10.89490 -10.84150 -10.37781 -10.10125 -9.94266 -9.58362 -9.45266 -9.18124 -8.70822 -8.52663 -8.32951 -7.91807 -7.51814 -5.94224 -3.98456 1.52448 1.55460 3.22402 3.37363 3.41510 3.45064 3.60314 3.86846 4.02515 4.20467 4.36998 4.54959 4.68189 4.84196 4.95068 5.07181 5.15793 5.23982 5.25879 5.27117 5.35877 5.38751 5.39401 5.43552 5.45752 5.51728 5.53156 5.55340 5.56219 5.60185 5.74522 5.76687 5.85025 5.92377 6.11023 6.19332 6.52962 6.56650 6.67051 6.73835 6.81226 6.86166 6.95800 7.35795 7.39217 7.56966 7.62891 7.75916 8.04165 8.34630 8.64231 9.01457 9.28436 9.65586 11.13526 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.002959 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.259882 B = 9460.744481 C =11061.651140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.264 3.736 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.697 3.303 16 O -0.566 6.566 17 N -0.699 5.699 18 C 0.180 3.820 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.067 4.067 23 C 0.097 3.903 24 N -0.542 5.542 25 C 0.019 3.981 26 C 0.024 3.976 27 C -0.134 4.134 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.399 0.601 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.023 0.977 46 H 0.078 0.922 47 H 0.024 0.976 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.322 22.693 -2.353 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.332 5.332 6 C 0.145 3.855 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.399 3.601 16 O -0.442 6.442 17 N -0.348 5.348 18 C 0.084 3.916 19 C -0.138 4.138 20 C -0.121 4.121 21 C -0.161 4.161 22 C -0.068 4.068 23 C -0.030 4.030 24 N -0.265 5.265 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.156 4.156 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.096 0.904 47 H 0.042 0.958 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.888 21.680 -2.578 22.893 hybrid contribution 0.369 0.353 -0.055 0.514 sum -6.520 22.033 -2.634 23.128 Atomic orbital electron populations 1.22704 0.81984 1.02650 0.99098 1.88104 1.18757 1.26714 1.95129 1.23121 0.95269 0.85642 0.99524 1.21460 0.91271 0.98523 0.90082 1.47553 1.67504 1.09511 1.08650 1.19269 0.96660 0.70536 0.99005 1.21451 0.97517 0.92180 1.45409 0.92718 1.24901 0.97302 0.96401 0.95408 1.69934 1.34328 1.00995 1.48006 0.86604 0.84889 0.77259 0.78874 1.20363 1.21269 1.20292 1.15980 0.79181 0.80044 0.84928 1.90888 1.52382 1.72033 1.28938 1.43009 1.75012 1.05830 1.10974 1.17549 0.94312 0.91187 0.88588 1.21496 0.97164 1.00732 0.94440 1.21000 0.99341 0.94343 0.97380 1.20879 0.97862 0.97958 0.99377 1.19285 0.97518 0.95406 0.94606 1.21021 0.96454 0.88206 0.97325 1.61985 1.05272 1.05156 1.54118 1.22496 0.92115 1.02442 0.95881 1.22391 0.97382 0.92706 0.99917 1.20618 1.00362 0.96088 0.98545 0.94610 0.89703 0.94677 0.93017 0.93748 0.88496 0.90808 0.93435 0.94148 0.92794 0.76462 0.83773 0.86054 0.86878 0.90063 0.93987 0.91582 0.95830 0.90367 0.95774 0.91331 0.91339 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.32 9.53 -35.23 -0.34 -6.66 16 3 C 0.04 0.60 6.28 37.16 0.23 0.83 16 4 C 0.11 1.78 5.62 -4.04 -0.02 1.76 16 5 N -0.60 -12.81 2.42 -180.81 -0.44 -13.24 16 6 C 0.26 7.07 4.98 -5.19 -0.03 7.04 16 7 C -0.53 -15.13 9.39 -34.44 -0.32 -15.46 16 8 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 11 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.70 14.93 8.12 -86.93 -0.71 14.22 16 16 O -0.57 -14.54 13.36 5.28 0.07 -14.47 16 17 N -0.70 -11.43 5.22 -14.22 -0.07 -11.51 16 18 C 0.18 2.86 6.30 -83.69 -0.53 2.33 16 19 C -0.12 -1.99 8.70 -39.39 -0.34 -2.33 16 20 C -0.10 -1.41 10.04 -39.61 -0.40 -1.80 16 21 C -0.14 -1.69 7.91 -39.55 -0.31 -2.00 16 22 C -0.07 -0.80 4.88 -104.65 -0.51 -1.31 16 23 C 0.10 0.93 5.12 -4.98 -0.03 0.90 16 24 N -0.54 -5.03 5.01 -252.72 -1.27 -6.30 16 25 C 0.02 0.16 9.26 60.07 0.56 0.72 16 26 C 0.02 0.17 9.57 60.06 0.57 0.75 16 27 C -0.13 -1.76 9.62 -39.39 -0.38 -2.14 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.65 8.07 -51.93 -0.42 1.23 16 34 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 35 H 0.05 1.32 7.11 -51.93 -0.37 0.95 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.40 5.18 6.52 -40.82 -0.27 4.91 16 39 H 0.14 2.88 6.23 -52.49 -0.33 2.55 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.11 8.00 -52.49 -0.42 0.69 16 42 H 0.08 0.71 8.01 -51.93 -0.42 0.30 16 43 H 0.04 0.37 8.06 -51.93 -0.42 -0.05 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.08 0.75 5.91 -51.93 -0.31 0.44 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 48 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 407.18 15.07 6.14 6.14 Total: -1.00 -34.95 407.18 -9.66 -44.61 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.27 Total: 3.82 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.19 Total: 6.74 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -1.04 Total: -57.37 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.27 Total: -21.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.95 -9.66 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.415 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds