Wall clock time and date at job start Tue Mar 31 2020 18:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46900 * 111.00108 * 2 1 4 4 C 1.46895 * 111.00384 * 123.95434 * 2 1 3 5 5 C 1.52998 * 109.47188 * 66.04877 * 4 2 1 6 6 C 1.53000 * 109.47651 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47711 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99959 * 270.00474 * 7 6 5 9 9 C 1.50708 * 109.46686 * 269.99215 * 8 7 6 10 10 H 1.08000 * 120.00021 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99810 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99786 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47020 * 89.99559 * 13 11 9 15 15 H 1.48496 * 109.47352 * 210.00257 * 13 11 9 16 16 H 1.48508 * 109.47027 * 330.00229 * 13 11 9 17 17 C 1.34783 * 119.99839 * 89.99514 * 7 6 5 18 18 O 1.21278 * 119.99864 * 0.02562 * 17 7 6 19 19 C 1.50704 * 119.99873 * 180.02562 * 17 7 6 20 20 O 1.42895 * 109.47012 * 180.02562 * 19 17 7 21 21 C 1.42900 * 113.99877 * 179.97438 * 20 19 17 22 22 C 1.50703 * 109.46665 * 179.97438 * 21 20 19 23 23 C 1.38223 * 119.62264 * 0.02656 * 22 21 20 24 24 C 1.38628 * 119.16031 * 179.97438 * 23 22 21 25 25 C 1.38672 * 118.42475 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.15778 * 0.02562 * 25 24 23 27 27 N 1.31856 * 119.61279 * 180.02562 * 22 21 20 28 28 H 1.09006 * 109.47423 * 296.04340 * 1 2 3 29 29 H 1.08997 * 109.47391 * 56.04527 * 1 2 3 30 30 H 1.09006 * 109.47287 * 176.04937 * 1 2 3 31 31 H 1.08992 * 109.47621 * 183.95690 * 3 2 1 32 32 H 1.09000 * 109.47171 * 303.95942 * 3 2 1 33 33 H 1.08999 * 109.47109 * 63.95123 * 3 2 1 34 34 H 1.09002 * 109.47117 * 306.04666 * 4 2 1 35 35 H 1.09001 * 109.47425 * 186.04371 * 4 2 1 36 36 H 1.09002 * 109.47264 * 59.99879 * 5 4 2 37 37 H 1.09006 * 109.46958 * 299.99963 * 5 4 2 38 38 H 1.09002 * 109.47098 * 59.99517 * 6 5 4 39 39 H 1.08999 * 109.46770 * 300.00257 * 6 5 4 40 40 H 1.08993 * 109.47211 * 29.99500 * 8 7 6 41 41 H 1.09002 * 109.46823 * 149.99937 * 8 7 6 42 42 H 0.97001 * 119.99456 * 179.97438 * 12 11 9 43 43 H 1.09002 * 109.46796 * 60.00010 * 19 17 7 44 44 H 1.09002 * 109.46864 * 300.00185 * 19 17 7 45 45 H 1.09000 * 109.46932 * 60.00268 * 21 20 19 46 46 H 1.08993 * 109.47528 * 300.00136 * 21 20 19 47 47 H 1.07995 * 120.41821 * 359.95030 * 23 22 21 48 48 H 1.08006 * 120.78822 * 180.02562 * 24 23 22 49 49 H 1.07993 * 120.42192 * 179.97438 * 25 24 23 50 50 H 1.08001 * 119.60956 * 180.27218 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1794 -3.0404 2.1553 7 7 1.8304 -4.4541 1.9955 8 6 0.5734 -4.9653 2.5476 9 6 0.8017 -5.4416 3.9591 10 1 1.7847 -5.3702 4.4008 11 6 -0.2443 -5.9685 4.6866 12 7 -1.4412 -6.0558 4.1485 13 14 0.0385 -6.5582 6.4363 14 1 -0.1959 -5.4364 7.3807 15 1 -0.9000 -7.6675 6.7426 16 1 1.4364 -7.0395 6.5767 17 6 2.6658 -5.2845 1.3403 18 8 3.7065 -4.8613 0.8835 19 6 2.3066 -6.7388 1.1754 20 8 3.3429 -7.4064 0.4527 21 6 3.0999 -8.7986 0.2411 22 6 4.2498 -9.3981 -0.5267 23 6 5.3120 -8.5973 -0.9021 24 6 6.3649 -9.1589 -1.6077 25 6 6.3101 -10.5111 -1.9103 26 6 5.2151 -11.2485 -1.5018 27 7 4.2307 -10.6805 -0.8327 28 1 -0.3634 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0253 -0.0708 31 1 3.0826 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1755 36 1 2.0659 -2.6213 0.0450 37 1 0.5472 -2.3475 0.9323 38 1 1.7447 -2.6615 3.0804 39 1 3.2636 -2.9354 2.1938 40 1 -0.1728 -4.1709 2.5484 41 1 0.2194 -5.7958 1.9367 42 1 -2.1770 -6.4269 4.6602 43 1 1.3688 -6.8213 0.6260 44 1 2.1943 -7.1989 2.1571 45 1 2.1787 -8.9243 -0.3278 46 1 3.0039 -9.3011 1.2036 47 1 5.3215 -7.5475 -0.6492 48 1 7.2084 -8.5577 -1.9137 49 1 7.1124 -10.9817 -2.4589 50 1 5.1669 -12.3031 -1.7297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807025076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:51 Heat of formation + Delta-G solvation = -40.377860 kcal Electronic energy + Delta-G solvation = -28597.187025 eV Core-core repulsion = 24624.815470 eV Total energy + Delta-G solvation = -3972.371555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.20845 -39.27314 -37.69792 -37.11793 -35.13492 -32.99301 -32.64356 -31.93602 -31.53240 -28.26290 -27.60459 -27.39898 -26.38861 -25.12995 -23.45789 -23.05532 -22.31787 -21.96199 -20.63984 -18.57802 -17.23484 -16.78049 -16.61402 -16.31008 -15.94748 -15.73536 -15.50494 -15.27217 -15.19086 -14.88628 -14.50575 -14.49659 -14.30679 -13.90732 -13.60011 -13.49222 -13.13346 -12.62521 -12.53706 -12.39116 -12.16752 -11.92678 -11.75709 -11.71445 -11.62828 -11.52626 -11.41993 -11.22320 -11.12111 -10.97969 -10.79685 -10.31283 -10.09818 -9.93056 -9.80458 -9.55660 -9.47302 -9.02457 -8.88584 -8.61765 -8.34234 -7.78000 -6.25289 -4.33594 1.07325 1.26534 3.18562 3.19206 3.26607 3.29555 3.35936 3.75686 3.92311 4.14510 4.28611 4.69830 4.77467 4.81877 5.06324 5.07803 5.08695 5.15384 5.20183 5.29718 5.34168 5.38430 5.46890 5.51931 5.56091 5.64422 5.66262 5.69329 5.70695 5.78382 5.82601 5.83794 5.88681 5.95216 6.01351 6.09217 6.15653 6.22738 6.46982 6.60702 6.67997 6.71387 7.03040 7.05633 7.07796 7.25910 7.51369 7.69818 7.93166 7.97303 8.25818 8.72549 8.97384 9.35414 10.81115 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006786 B = 0.003292 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4125.396576 B = 8502.295751 C =11983.556308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.125 3.875 7 N -0.593 5.593 8 C 0.236 3.764 9 C -0.543 4.543 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.521 3.479 18 O -0.555 6.555 19 C 0.051 3.949 20 O -0.368 6.368 21 C 0.112 3.888 22 C 0.130 3.870 23 C -0.143 4.143 24 C -0.079 4.079 25 C -0.181 4.181 26 C 0.097 3.903 27 N -0.484 5.484 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.266 0.734 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.152 0.848 48 H 0.134 0.866 49 H 0.132 0.868 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 1.141 -9.678 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.325 5.325 8 C 0.116 3.884 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.308 3.692 18 O -0.434 6.434 19 C -0.028 4.028 20 O -0.286 6.286 21 C 0.034 3.966 22 C -0.007 4.007 23 C -0.163 4.163 24 C -0.105 4.105 25 C -0.201 4.201 26 C -0.061 4.061 27 N -0.195 5.195 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.169 0.831 48 H 0.152 0.848 49 H 0.150 0.850 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.827 0.676 -10.099 12.795 hybrid contribution 0.072 0.385 1.652 1.698 sum 7.899 1.061 -8.448 11.614 Atomic orbital electron populations 1.22439 0.87404 1.02774 1.00090 1.61967 1.08105 1.13403 1.43761 1.22363 1.00728 0.89065 1.00168 1.22075 1.00070 0.93906 0.90882 1.21949 1.01540 0.93268 1.00044 1.21189 1.00545 0.80752 0.97407 1.48089 1.22577 1.07943 1.53896 1.19467 0.79785 0.95342 0.93810 1.21519 0.96205 1.42043 0.98371 0.91944 1.24940 0.94873 0.95337 0.98528 1.69917 1.00542 1.44820 1.37483 0.86524 0.78325 0.78561 0.84288 1.20481 1.20990 1.19689 1.19952 0.83702 0.87258 0.78252 1.90612 1.25088 1.77709 1.50028 1.22295 0.90384 0.91908 0.98210 1.87822 1.44489 1.19816 1.76485 1.20912 0.94486 0.82276 0.98915 1.20883 0.94985 0.89394 0.95424 1.22125 0.93661 1.02840 0.97657 1.21657 0.98218 0.94996 0.95609 1.22119 1.00166 0.95265 1.02526 1.22630 0.89320 1.00054 0.94072 1.67225 1.28163 1.11558 1.12506 0.95663 0.91779 0.90738 0.91447 0.91643 0.95855 0.94687 0.90747 0.91017 0.91704 0.90482 0.90923 0.94413 0.94517 0.92426 0.90337 0.88709 0.90808 0.90603 0.83071 0.84831 0.85008 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -7.09 5.02 -251.27 -1.26 -8.35 16 3 C 0.03 0.26 9.57 60.06 0.57 0.84 16 4 C 0.06 0.80 4.96 -3.83 -0.02 0.78 16 5 C -0.13 -2.04 5.46 -26.73 -0.15 -2.19 16 6 C 0.13 2.23 5.41 -4.04 -0.02 2.21 16 7 N -0.59 -12.08 2.46 -175.06 -0.43 -12.51 16 8 C 0.24 5.32 4.97 -5.19 -0.03 5.29 16 9 C -0.54 -13.54 9.28 -34.44 -0.32 -13.86 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -23.65 13.29 55.43 0.74 -22.92 16 13 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 17 C 0.52 10.85 7.75 -10.98 -0.09 10.76 16 18 O -0.56 -12.69 16.08 -14.35 -0.23 -12.92 16 19 C 0.05 0.94 4.97 36.01 0.18 1.12 16 20 O -0.37 -6.52 8.33 -55.14 -0.46 -6.98 16 21 C 0.11 1.67 6.48 36.01 0.23 1.91 16 22 C 0.13 1.93 6.78 -82.59 -0.56 1.37 16 23 C -0.14 -2.01 9.41 -39.44 -0.37 -2.38 16 24 C -0.08 -0.88 10.18 -39.28 -0.40 -1.28 16 25 C -0.18 -1.80 10.11 -39.44 -0.40 -2.19 16 26 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 27 N -0.48 -6.86 10.27 -9.47 -0.10 -6.96 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.94 6.47 -51.93 -0.34 0.60 16 31 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 40 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 41 H 0.04 0.84 6.44 -51.93 -0.33 0.51 16 42 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.08 1.34 7.40 -51.93 -0.38 0.95 16 44 H 0.10 1.79 8.00 -51.93 -0.42 1.37 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.15 2.30 7.00 -52.49 -0.37 1.94 16 48 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -30.04 414.57 -10.04 -40.08 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.43 Total: 3.65 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.09 Total: 5.67 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -1.05 Total: -50.74 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.69 Total: -19.90 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.04 -10.04 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807025076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.298 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds