Wall clock time and date at job start Tue Mar 31 2020 18:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46900 * 111.00108 * 2 1 4 4 C 1.46895 * 111.00384 * 123.95434 * 2 1 3 5 5 C 1.52998 * 109.47188 * 66.04877 * 4 2 1 6 6 C 1.53000 * 109.47651 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47711 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99959 * 270.00474 * 7 6 5 9 9 C 1.50708 * 109.46686 * 269.99215 * 8 7 6 10 10 H 1.08000 * 120.00021 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99810 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99786 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47020 * 89.99559 * 13 11 9 15 15 H 1.48496 * 109.47352 * 210.00257 * 13 11 9 16 16 H 1.48508 * 109.47027 * 330.00229 * 13 11 9 17 17 C 1.34783 * 119.99839 * 89.99514 * 7 6 5 18 18 O 1.21278 * 119.99864 * 0.02562 * 17 7 6 19 19 C 1.50704 * 119.99873 * 180.02562 * 17 7 6 20 20 O 1.42895 * 109.47012 * 180.02562 * 19 17 7 21 21 C 1.42900 * 113.99877 * 179.97438 * 20 19 17 22 22 C 1.50703 * 109.46665 * 179.97438 * 21 20 19 23 23 C 1.38223 * 119.62264 * 0.02656 * 22 21 20 24 24 C 1.38628 * 119.16031 * 179.97438 * 23 22 21 25 25 C 1.38672 * 118.42475 * 359.97438 * 24 23 22 26 26 C 1.38186 * 119.15778 * 0.02562 * 25 24 23 27 27 N 1.31856 * 119.61279 * 180.02562 * 22 21 20 28 28 H 1.09006 * 109.47423 * 296.04340 * 1 2 3 29 29 H 1.08997 * 109.47391 * 56.04527 * 1 2 3 30 30 H 1.09006 * 109.47287 * 176.04937 * 1 2 3 31 31 H 1.08992 * 109.47621 * 183.95690 * 3 2 1 32 32 H 1.09000 * 109.47171 * 303.95942 * 3 2 1 33 33 H 1.08999 * 109.47109 * 63.95123 * 3 2 1 34 34 H 1.09002 * 109.47117 * 306.04666 * 4 2 1 35 35 H 1.09001 * 109.47425 * 186.04371 * 4 2 1 36 36 H 1.09002 * 109.47264 * 59.99879 * 5 4 2 37 37 H 1.09006 * 109.46958 * 299.99963 * 5 4 2 38 38 H 1.09002 * 109.47098 * 59.99517 * 6 5 4 39 39 H 1.08999 * 109.46770 * 300.00257 * 6 5 4 40 40 H 1.08993 * 109.47211 * 29.99500 * 8 7 6 41 41 H 1.09002 * 109.46823 * 149.99937 * 8 7 6 42 42 H 0.97001 * 119.99456 * 179.97438 * 12 11 9 43 43 H 1.09002 * 109.46796 * 60.00010 * 19 17 7 44 44 H 1.09002 * 109.46864 * 300.00185 * 19 17 7 45 45 H 1.09000 * 109.46932 * 60.00268 * 21 20 19 46 46 H 1.08993 * 109.47528 * 300.00136 * 21 20 19 47 47 H 1.07995 * 120.41821 * 359.95030 * 23 22 21 48 48 H 1.08006 * 120.78822 * 180.02562 * 24 23 22 49 49 H 1.07993 * 120.42192 * 179.97438 * 25 24 23 50 50 H 1.08001 * 119.60956 * 180.27218 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1794 -3.0404 2.1553 7 7 1.8304 -4.4541 1.9955 8 6 0.5734 -4.9653 2.5476 9 6 0.8017 -5.4416 3.9591 10 1 1.7847 -5.3702 4.4008 11 6 -0.2443 -5.9685 4.6866 12 7 -1.4412 -6.0558 4.1485 13 14 0.0385 -6.5582 6.4363 14 1 -0.1959 -5.4364 7.3807 15 1 -0.9000 -7.6675 6.7426 16 1 1.4364 -7.0395 6.5767 17 6 2.6658 -5.2845 1.3403 18 8 3.7065 -4.8613 0.8835 19 6 2.3066 -6.7388 1.1754 20 8 3.3429 -7.4064 0.4527 21 6 3.0999 -8.7986 0.2411 22 6 4.2498 -9.3981 -0.5267 23 6 5.3120 -8.5973 -0.9021 24 6 6.3649 -9.1589 -1.6077 25 6 6.3101 -10.5111 -1.9103 26 6 5.2151 -11.2485 -1.5018 27 7 4.2307 -10.6805 -0.8327 28 1 -0.3634 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0253 -0.0708 31 1 3.0826 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1755 36 1 2.0659 -2.6213 0.0450 37 1 0.5472 -2.3475 0.9323 38 1 1.7447 -2.6615 3.0804 39 1 3.2636 -2.9354 2.1938 40 1 -0.1728 -4.1709 2.5484 41 1 0.2194 -5.7958 1.9367 42 1 -2.1770 -6.4269 4.6602 43 1 1.3688 -6.8213 0.6260 44 1 2.1943 -7.1989 2.1571 45 1 2.1787 -8.9243 -0.3278 46 1 3.0039 -9.3011 1.2036 47 1 5.3215 -7.5475 -0.6492 48 1 7.2084 -8.5577 -1.9137 49 1 7.1124 -10.9817 -2.4589 50 1 5.1669 -12.3031 -1.7297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807025076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:50 Heat of formation + Delta-G solvation = -57.727442 kcal Electronic energy + Delta-G solvation = -28597.939359 eV Core-core repulsion = 24624.815470 eV Total energy + Delta-G solvation = -3973.123889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22351 -40.85251 -38.85955 -38.39297 -36.83105 -34.78627 -33.60733 -33.21510 -32.75480 -29.58685 -29.24180 -28.48149 -27.58373 -26.42289 -24.90806 -24.38955 -23.57523 -22.96872 -21.79266 -20.19309 -18.68697 -18.44512 -17.92978 -17.59933 -17.35465 -17.07856 -16.58330 -16.41205 -16.28489 -16.17169 -16.12169 -15.75444 -15.50187 -15.10195 -14.82153 -14.74292 -14.31454 -14.13184 -13.92279 -13.59053 -13.42287 -13.25858 -13.14763 -13.07817 -12.86253 -12.72821 -12.63979 -12.58409 -12.49948 -12.40775 -12.31876 -12.05439 -11.70923 -11.49009 -11.00663 -10.78099 -10.76181 -10.53947 -10.43406 -9.86905 -9.51363 -9.31530 -8.21580 -6.36154 0.13838 0.34638 1.41200 1.44386 1.52585 1.66571 1.80288 2.39126 2.68365 2.81681 3.05411 3.09379 3.53085 3.77228 3.86079 3.94684 4.03153 4.11431 4.16959 4.20157 4.24369 4.31366 4.34528 4.39240 4.40930 4.45972 4.46226 4.51542 4.61646 4.67017 4.68787 4.74990 4.80170 4.88791 4.91711 5.00524 5.01887 5.12737 5.17433 5.18722 5.28207 5.30768 5.62716 5.76024 5.79798 5.99828 6.03158 6.05763 6.12144 6.50705 6.78217 6.97719 7.25736 7.38451 8.83818 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006786 B = 0.003292 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4125.396576 B = 8502.295751 C =11983.556308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.566 5.566 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.113 4.113 6 C 0.123 3.877 7 N -0.594 5.594 8 C 0.251 3.749 9 C -0.550 4.550 10 H 0.053 0.947 11 C 0.027 3.973 12 N -0.916 5.916 13 Si 0.952 3.048 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.272 1.272 17 C 0.516 3.484 18 O -0.578 6.578 19 C 0.058 3.942 20 O -0.380 6.380 21 C 0.110 3.890 22 C 0.106 3.894 23 C -0.165 4.165 24 C -0.079 4.079 25 C -0.167 4.167 26 C 0.090 3.910 27 N -0.508 5.508 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.269 0.731 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.160 0.840 49 H 0.173 0.827 50 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 0.648 -10.206 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.152 4.152 6 C 0.000 4.000 7 N -0.325 5.325 8 C 0.130 3.870 9 C -0.589 4.589 10 H 0.072 0.928 11 C -0.174 4.174 12 N -0.555 5.555 13 Si 0.778 3.222 14 H -0.201 1.201 15 H -0.206 1.206 16 H -0.197 1.197 17 C 0.304 3.696 18 O -0.459 6.459 19 C -0.021 4.021 20 O -0.298 6.298 21 C 0.033 3.967 22 C -0.030 4.030 23 C -0.185 4.185 24 C -0.105 4.105 25 C -0.186 4.186 26 C -0.067 4.067 27 N -0.219 5.219 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.147 0.853 48 H 0.177 0.823 49 H 0.191 0.809 50 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.884 0.203 -10.627 13.852 hybrid contribution -0.186 0.497 1.734 1.813 sum 8.697 0.700 -8.893 12.458 Atomic orbital electron populations 1.22445 0.86905 1.02264 1.01029 1.61950 1.08751 1.14945 1.43330 1.22421 1.01034 0.87686 1.01126 1.21957 1.00430 0.92280 0.91610 1.21753 1.00774 0.94722 0.97990 1.21320 1.00457 0.79765 0.98485 1.48110 1.21864 1.09021 1.53488 1.19157 0.80241 0.94661 0.92922 1.21681 0.95789 1.42045 0.99374 0.92850 1.25575 0.94645 0.95429 1.01746 1.69995 1.01163 1.45546 1.38779 0.85639 0.78070 0.78168 0.80335 1.20051 1.20576 1.19699 1.20350 0.83306 0.88193 0.77770 1.90589 1.25980 1.78338 1.51041 1.22161 0.91112 0.90536 0.98272 1.87818 1.44338 1.21371 1.76266 1.21009 0.95524 0.80783 0.99360 1.20807 0.95278 0.90146 0.96778 1.22051 0.95042 1.01933 0.99516 1.22005 0.97892 0.96111 0.94445 1.22551 1.00484 0.94429 1.01135 1.23311 0.88867 1.01656 0.92856 1.67219 1.29798 1.11121 1.13731 0.95316 0.90106 0.92117 0.91013 0.90248 0.95202 0.94081 0.90296 0.92939 0.92214 0.90220 0.91215 0.95554 0.94957 0.92236 0.89103 0.89318 0.90050 0.90515 0.85265 0.82281 0.80929 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.32 127.69 1.19 1.68 16 2 N -0.57 -14.08 5.02 -948.89 -4.76 -18.84 16 3 C 0.03 0.48 9.57 127.69 1.22 1.70 16 4 C 0.07 1.75 4.96 86.30 0.43 2.18 16 5 C -0.11 -3.65 5.46 30.59 0.17 -3.49 16 6 C 0.12 4.48 5.41 86.38 0.47 4.94 16 7 N -0.59 -24.80 2.46 -826.15 -2.03 -26.83 16 8 C 0.25 11.54 4.97 85.64 0.43 11.97 16 9 C -0.55 -27.72 9.28 25.60 0.24 -27.48 16 10 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 11 C 0.03 1.38 5.46 84.65 0.46 1.84 16 12 N -0.92 -48.79 13.29 21.45 0.28 -48.50 16 13 Si 0.95 40.86 29.54 68.60 2.03 42.88 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 C 0.52 22.12 7.75 87.66 0.68 22.80 16 18 O -0.58 -27.26 16.08 16.01 0.26 -27.00 16 19 C 0.06 2.22 4.97 71.24 0.35 2.58 16 20 O -0.38 -14.01 8.33 -129.94 -1.08 -15.09 16 21 C 0.11 3.43 6.48 71.24 0.46 3.89 16 22 C 0.11 3.20 6.78 42.55 0.29 3.49 16 23 C -0.17 -4.71 9.41 22.36 0.21 -4.50 16 24 C -0.08 -1.63 10.18 22.47 0.23 -1.40 16 25 C -0.17 -2.78 10.11 22.36 0.23 -2.55 16 26 C 0.09 1.80 11.18 84.67 0.95 2.75 16 27 N -0.51 -14.06 10.27 -183.88 -1.89 -15.94 16 28 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.06 1.53 6.47 -2.38 -0.02 1.51 16 31 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 32 H 0.08 1.28 8.12 -2.39 -0.02 1.27 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.04 1.04 8.12 -2.39 -0.02 1.03 16 35 H 0.08 2.02 8.06 -2.39 -0.02 2.00 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.97 6.55 -2.38 -0.02 1.96 16 38 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 39 H 0.07 2.58 7.42 -2.39 -0.02 2.56 16 40 H 0.03 1.27 8.07 -2.39 -0.02 1.26 16 41 H 0.03 1.52 6.44 -2.39 -0.02 1.50 16 42 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 43 H 0.09 3.19 7.40 -2.39 -0.02 3.17 16 44 H 0.09 3.47 8.00 -2.39 -0.02 3.45 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.13 4.18 7.00 -2.91 -0.02 4.16 16 48 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 49 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 50 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -64.76 414.57 1.70 -63.06 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.90 Total: 25.87 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 7.99 Total: 20.39 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -8.39 Total: -110.12 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.82 Total: -42.09 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -64.76 1.70 -63.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807025076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.332 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds