Wall clock time and date at job start Tue Mar 31 2020 18:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99678 * 2 1 4 4 C 1.34774 * 119.99841 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00324 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00055 * 179.97438 * 4 2 1 7 7 C 1.52994 * 109.47446 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47201 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47418 * 300.00315 * 8 7 6 10 10 C 1.50703 * 109.47003 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00275 * 341.09762 * 10 9 8 12 12 N 1.34779 * 119.99707 * 161.09880 * 10 9 8 13 13 C 1.46495 * 120.00128 * 4.81025 * 12 10 9 14 14 C 1.50705 * 109.46929 * 265.16890 * 13 12 10 15 15 H 1.07993 * 120.00025 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00096 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99782 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46750 * 90.00094 * 18 16 14 20 20 H 1.48496 * 109.46735 * 209.99808 * 18 16 14 21 21 H 1.48500 * 109.47292 * 329.99854 * 18 16 14 22 22 C 1.46500 * 119.99493 * 185.09033 * 12 10 9 23 23 C 1.52999 * 109.46768 * 273.65692 * 22 12 10 24 24 C 1.47202 * 109.47059 * 180.02562 * 23 22 12 25 25 N 9.64437 * 155.84795 * 328.83978 * 6 1 2 26 26 C 1.53001 * 109.47013 * 59.99873 * 9 8 7 27 27 C 1.52997 * 109.47196 * 299.99632 * 26 9 8 28 28 H 1.09004 * 109.47129 * 270.00142 * 1 2 3 29 29 H 1.08993 * 109.47261 * 29.99852 * 1 2 3 30 30 H 1.08997 * 109.47017 * 150.00696 * 1 2 3 31 31 H 1.09003 * 109.46722 * 269.99391 * 3 2 1 32 32 H 1.08994 * 109.47468 * 29.99769 * 3 2 1 33 33 H 1.09005 * 109.46920 * 150.00242 * 3 2 1 34 34 H 1.09006 * 109.46826 * 60.00140 * 6 4 2 35 35 H 1.09006 * 109.47237 * 60.00094 * 7 6 4 36 36 H 1.08996 * 109.47538 * 300.00231 * 7 6 4 37 37 H 1.08998 * 109.46850 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.46293 * 60.00351 * 8 7 6 39 39 H 1.08997 * 109.47004 * 299.99871 * 9 8 7 40 40 H 1.08998 * 109.47287 * 25.16903 * 13 12 10 41 41 H 1.08996 * 109.47090 * 145.17152 * 13 12 10 42 42 H 0.97004 * 120.00500 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.47795 * 33.65874 * 22 12 10 44 44 H 1.09008 * 109.46953 * 153.66447 * 22 12 10 45 45 H 1.08997 * 109.47385 * 300.00152 * 23 22 12 46 46 H 1.09003 * 109.47188 * 60.00820 * 23 22 12 47 47 H 1.08997 * 109.47237 * 60.00141 * 26 9 8 48 48 H 1.09006 * 109.46828 * 179.97438 * 26 9 8 49 49 H 1.08997 * 109.47443 * 300.00383 * 27 26 9 50 50 H 1.08998 * 109.47121 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 6 4.1559 -2.6097 0.0001 8 6 5.6859 -2.6097 -0.0012 9 6 6.1950 -1.8889 -1.2510 10 6 7.7020 -1.8884 -1.2518 11 8 8.3091 -2.0898 -0.2214 12 7 8.3752 -1.6640 -2.3977 13 6 7.6458 -1.3166 -3.6197 14 6 7.3965 -2.5641 -4.4277 15 1 7.7461 -3.5200 -4.0668 16 6 6.7212 -2.4851 -5.6273 17 7 6.5033 -3.5737 -6.3321 18 14 6.1160 -0.8315 -6.2512 19 1 7.1696 -0.2022 -7.0873 20 1 4.8898 -1.0285 -7.0653 21 1 5.8074 0.0503 -5.0969 22 6 9.8359 -1.7735 -2.4225 23 6 10.4545 -0.4383 -2.0037 24 6 11.9222 -0.5481 -2.0292 25 7 13.0566 -0.6344 -2.0419 26 6 5.6850 -0.4464 -1.2511 27 6 4.1550 -0.4463 -1.2500 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0096 -0.6528 0.8895 35 1 3.7923 -3.1238 -0.8897 36 1 3.7930 -3.1234 0.8902 37 1 6.0492 -3.6373 -0.0006 38 1 6.0499 -2.0955 0.8884 39 1 5.8310 -2.4030 -2.1405 40 1 6.6927 -0.8580 -3.3561 41 1 8.2364 -0.6145 -4.2082 42 1 6.0279 -3.5182 -7.1759 43 1 10.1536 -2.5539 -1.7311 44 1 10.1642 -2.0257 -3.4309 45 1 10.1368 0.3421 -2.6952 46 1 10.1262 -0.1861 -0.9954 47 1 6.0490 0.0678 -0.3615 48 1 6.0480 0.0673 -2.1413 49 1 3.7910 -0.9605 -2.1395 50 1 3.7917 0.5813 -1.2496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823230880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:20 Heat of formation + Delta-G solvation = -53.469397 kcal Electronic energy + Delta-G solvation = -30209.320365 eV Core-core repulsion = 26236.381118 eV Total energy + Delta-G solvation = -3972.939247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.61206 -39.62151 -37.26300 -36.52547 -35.75824 -35.33833 -32.89722 -31.96902 -30.96321 -30.47498 -28.15773 -27.87531 -26.59461 -24.68376 -23.18777 -22.51363 -22.33574 -20.13172 -19.22916 -18.40786 -17.62081 -17.01483 -16.93190 -16.56062 -16.32496 -15.88779 -15.64497 -14.90704 -14.73122 -14.33622 -14.21666 -14.03258 -13.94648 -13.56826 -13.22632 -13.09766 -12.94176 -12.85707 -12.66444 -12.59063 -12.40266 -12.30214 -12.22556 -12.08475 -11.89532 -11.82153 -11.57120 -11.32390 -11.14672 -11.02601 -10.93033 -10.78479 -10.67119 -10.28898 -10.24125 -9.97652 -9.76239 -9.65832 -9.09137 -8.87441 -8.77961 -7.96955 -6.27665 -4.30226 2.56341 2.78860 2.85318 2.88914 3.10768 3.15511 3.17691 3.21200 3.58410 4.19169 4.27308 4.37880 4.67372 4.77135 4.80258 4.93537 5.01895 5.02754 5.12564 5.22420 5.24025 5.29906 5.31614 5.34085 5.36999 5.40987 5.53243 5.59033 5.59738 5.63860 5.68573 5.89073 5.95081 6.07181 6.08336 6.18093 6.20614 6.24847 6.29230 6.31872 6.38134 6.46709 6.61783 6.68976 7.15540 7.16475 7.36202 7.65997 7.96581 8.08232 8.31624 8.72878 8.81416 9.30564 10.84929 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.003840 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.297649 B = 7289.120976 C = 8849.717349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.626 5.626 3 C 0.075 3.925 4 C 0.518 3.482 5 O -0.536 6.536 6 C -0.103 4.103 7 C -0.098 4.098 8 C -0.096 4.096 9 C -0.110 4.110 10 C 0.526 3.474 11 O -0.565 6.565 12 N -0.590 5.590 13 C 0.200 3.800 14 C -0.545 4.545 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.887 5.887 18 Si 0.868 3.132 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.262 1.262 22 C 0.126 3.874 23 C -0.045 4.045 24 C 0.219 3.781 25 N -0.449 5.449 26 C -0.108 4.108 27 C -0.121 4.121 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 12.631 11.065 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.361 5.361 3 C -0.068 4.068 4 C 0.306 3.694 5 O -0.412 6.412 6 C -0.124 4.124 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.131 4.131 10 C 0.315 3.685 11 O -0.444 6.444 12 N -0.320 5.320 13 C 0.080 3.920 14 C -0.583 4.583 15 H 0.097 0.903 16 C -0.126 4.126 17 N -0.525 5.525 18 Si 0.694 3.306 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.187 1.187 22 C 0.001 3.999 23 C -0.086 4.086 24 C -0.098 4.098 25 N -0.126 5.126 26 C -0.145 4.145 27 C -0.158 4.158 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.278 11.765 11.380 17.914 hybrid contribution -0.883 0.940 -0.756 1.495 sum -8.161 12.706 10.624 18.464 Atomic orbital electron populations 1.21613 0.79502 1.03097 1.01588 1.47774 1.06955 1.06594 1.74758 1.22001 0.97488 0.85185 1.02109 1.20919 0.90474 0.82896 0.75072 1.90690 1.70459 1.31022 1.49076 1.21370 0.90384 0.99981 1.00686 1.21371 0.95141 0.93596 1.03493 1.21335 0.93912 1.01066 0.97048 1.21366 0.91886 0.97977 1.01866 1.20544 0.90015 0.75306 0.82683 1.90609 1.70608 1.51026 1.32198 1.47908 1.05428 1.67919 1.10724 1.20039 0.92504 0.97235 0.82253 1.21359 1.37980 0.94227 1.04729 0.90271 1.24875 0.95214 0.96246 0.96260 1.69879 1.40563 1.27785 1.14225 0.86983 0.79150 0.84649 0.79785 1.19930 1.20911 1.18665 1.21134 0.80988 0.94408 1.03366 1.19780 0.81211 1.02045 1.05593 1.29180 0.95103 0.92957 0.92607 1.81260 1.12996 1.08830 1.09540 1.21558 0.94654 0.95489 1.02824 1.21803 0.96152 1.00797 0.97064 0.92979 0.91397 0.90528 0.91919 0.91281 0.90350 0.88594 0.90777 0.91295 0.91227 0.91281 0.86802 0.93574 0.95282 0.92285 0.90126 0.88990 0.87326 0.87145 0.91550 0.90282 0.90705 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.44 59.85 0.62 1.34 16 2 N -0.63 -6.13 3.27 -189.51 -0.62 -6.75 16 3 C 0.08 0.47 8.80 59.85 0.53 1.00 16 4 C 0.52 6.61 7.08 -10.98 -0.08 6.53 16 5 O -0.54 -8.90 15.56 5.55 0.09 -8.82 16 6 C -0.10 -1.16 1.72 -91.77 -0.16 -1.32 16 7 C -0.10 -1.30 4.49 -26.73 -0.12 -1.42 16 8 C -0.10 -1.34 4.66 -26.73 -0.12 -1.46 16 9 C -0.11 -1.66 1.68 -91.77 -0.15 -1.82 16 10 C 0.53 8.97 6.82 -10.98 -0.07 8.90 16 11 O -0.56 -10.58 15.72 5.56 0.09 -10.49 16 12 N -0.59 -10.02 2.46 -175.06 -0.43 -10.46 16 13 C 0.20 3.77 3.79 -5.19 -0.02 3.75 16 14 C -0.54 -13.07 9.59 -34.44 -0.33 -13.40 16 15 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 16 C 0.08 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.89 -24.70 13.96 55.43 0.77 -23.92 16 18 Si 0.87 18.26 27.47 -169.99 -4.67 13.60 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.26 -4.93 6.54 56.52 0.37 -4.57 16 22 C 0.13 1.90 5.31 -4.04 -0.02 1.88 16 23 C -0.04 -0.53 6.01 -29.52 -0.18 -0.71 16 24 C 0.22 3.01 15.44 -20.70 -0.32 2.70 16 25 N -0.45 -7.28 18.55 42.22 0.78 -6.50 16 26 C -0.11 -1.30 4.89 -26.73 -0.13 -1.43 16 27 C -0.12 -1.32 4.84 -26.73 -0.13 -1.45 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 30 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 31 H 0.06 0.37 6.95 -51.93 -0.36 0.01 16 32 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 33 H 0.08 0.44 6.01 -51.93 -0.31 0.13 16 34 H 0.10 0.90 7.40 -51.93 -0.38 0.52 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 39 H 0.11 2.00 7.11 -51.93 -0.37 1.63 16 40 H 0.05 0.83 3.44 -51.93 -0.18 0.65 16 41 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.08 1.28 7.61 -51.93 -0.40 0.88 16 44 H 0.09 1.42 8.04 -51.92 -0.42 1.00 16 45 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.99 5.96 -51.93 -0.31 0.68 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.08 0.65 4.53 -51.93 -0.24 0.41 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -31.94 396.25 -6.76 -38.70 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.96 Total: 3.71 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.78 Total: 4.97 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.51 Total: -47.63 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.17 Total: -19.31 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.67 Total: 13.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.94 -6.76 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823230880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.771 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds