Wall clock time and date at job start Tue Mar 31 2020 18:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99678 * 2 1 4 4 C 1.34774 * 119.99841 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00324 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00055 * 179.97438 * 4 2 1 7 7 C 1.52994 * 109.47446 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47201 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47418 * 300.00315 * 8 7 6 10 10 C 1.50703 * 109.47003 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00275 * 341.09762 * 10 9 8 12 12 N 1.34779 * 119.99707 * 161.09880 * 10 9 8 13 13 C 1.46495 * 120.00128 * 4.81025 * 12 10 9 14 14 C 1.50705 * 109.46929 * 265.16890 * 13 12 10 15 15 H 1.07993 * 120.00025 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00096 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99782 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46750 * 90.00094 * 18 16 14 20 20 H 1.48496 * 109.46735 * 209.99808 * 18 16 14 21 21 H 1.48500 * 109.47292 * 329.99854 * 18 16 14 22 22 C 1.46500 * 119.99493 * 185.09033 * 12 10 9 23 23 C 1.52999 * 109.46768 * 273.65692 * 22 12 10 24 24 C 1.47202 * 109.47059 * 180.02562 * 23 22 12 25 25 N 9.64437 * 155.84795 * 328.83978 * 6 1 2 26 26 C 1.53001 * 109.47013 * 59.99873 * 9 8 7 27 27 C 1.52997 * 109.47196 * 299.99632 * 26 9 8 28 28 H 1.09004 * 109.47129 * 270.00142 * 1 2 3 29 29 H 1.08993 * 109.47261 * 29.99852 * 1 2 3 30 30 H 1.08997 * 109.47017 * 150.00696 * 1 2 3 31 31 H 1.09003 * 109.46722 * 269.99391 * 3 2 1 32 32 H 1.08994 * 109.47468 * 29.99769 * 3 2 1 33 33 H 1.09005 * 109.46920 * 150.00242 * 3 2 1 34 34 H 1.09006 * 109.46826 * 60.00140 * 6 4 2 35 35 H 1.09006 * 109.47237 * 60.00094 * 7 6 4 36 36 H 1.08996 * 109.47538 * 300.00231 * 7 6 4 37 37 H 1.08998 * 109.46850 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.46293 * 60.00351 * 8 7 6 39 39 H 1.08997 * 109.47004 * 299.99871 * 9 8 7 40 40 H 1.08998 * 109.47287 * 25.16903 * 13 12 10 41 41 H 1.08996 * 109.47090 * 145.17152 * 13 12 10 42 42 H 0.97004 * 120.00500 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.47795 * 33.65874 * 22 12 10 44 44 H 1.09008 * 109.46953 * 153.66447 * 22 12 10 45 45 H 1.08997 * 109.47385 * 300.00152 * 23 22 12 46 46 H 1.09003 * 109.47188 * 60.00820 * 23 22 12 47 47 H 1.08997 * 109.47237 * 60.00141 * 26 9 8 48 48 H 1.09006 * 109.46828 * 179.97438 * 26 9 8 49 49 H 1.08997 * 109.47443 * 300.00383 * 27 26 9 50 50 H 1.08998 * 109.47121 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1673 -0.0001 7 6 4.1559 -2.6097 0.0001 8 6 5.6859 -2.6097 -0.0012 9 6 6.1950 -1.8889 -1.2510 10 6 7.7020 -1.8884 -1.2518 11 8 8.3091 -2.0898 -0.2214 12 7 8.3752 -1.6640 -2.3977 13 6 7.6458 -1.3166 -3.6197 14 6 7.3965 -2.5641 -4.4277 15 1 7.7461 -3.5200 -4.0668 16 6 6.7212 -2.4851 -5.6273 17 7 6.5033 -3.5737 -6.3321 18 14 6.1160 -0.8315 -6.2512 19 1 7.1696 -0.2022 -7.0873 20 1 4.8898 -1.0285 -7.0653 21 1 5.8074 0.0503 -5.0969 22 6 9.8359 -1.7735 -2.4225 23 6 10.4545 -0.4383 -2.0037 24 6 11.9222 -0.5481 -2.0292 25 7 13.0566 -0.6344 -2.0419 26 6 5.6850 -0.4464 -1.2511 27 6 4.1550 -0.4463 -1.2500 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.0096 -0.6528 0.8895 35 1 3.7923 -3.1238 -0.8897 36 1 3.7930 -3.1234 0.8902 37 1 6.0492 -3.6373 -0.0006 38 1 6.0499 -2.0955 0.8884 39 1 5.8310 -2.4030 -2.1405 40 1 6.6927 -0.8580 -3.3561 41 1 8.2364 -0.6145 -4.2082 42 1 6.0279 -3.5182 -7.1759 43 1 10.1536 -2.5539 -1.7311 44 1 10.1642 -2.0257 -3.4309 45 1 10.1368 0.3421 -2.6952 46 1 10.1262 -0.1861 -0.9954 47 1 6.0490 0.0678 -0.3615 48 1 6.0480 0.0673 -2.1413 49 1 3.7910 -0.9605 -2.1395 50 1 3.7917 0.5813 -1.2496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823230880.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:19 Heat of formation + Delta-G solvation = -73.279225 kcal Electronic energy + Delta-G solvation = -30210.179383 eV Core-core repulsion = 26236.381118 eV Total energy + Delta-G solvation = -3973.798265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65735 -40.81508 -38.35674 -37.70062 -36.77174 -36.59086 -34.62911 -33.23229 -32.03682 -31.56150 -29.56153 -28.77032 -27.39711 -25.77098 -24.66629 -23.63741 -23.51820 -21.18190 -20.11525 -19.73412 -19.09432 -18.45434 -17.92148 -17.84416 -17.29277 -16.92523 -16.68583 -16.19631 -15.83316 -15.75672 -15.39906 -15.02167 -14.86818 -14.82123 -14.50763 -14.23222 -14.14704 -13.81023 -13.69989 -13.57327 -13.54334 -13.38467 -13.24564 -13.15934 -12.99656 -12.84548 -12.69062 -12.60624 -12.43150 -12.34576 -12.12130 -12.01690 -11.87541 -11.69484 -11.58045 -11.33492 -11.00542 -10.77714 -10.71322 -10.34810 -9.61701 -9.42582 -8.21673 -6.28877 1.47062 1.48637 1.57816 1.63315 1.64663 1.79947 1.82063 2.12563 2.31570 2.42695 3.13635 3.19978 3.48142 3.69615 3.79174 3.83966 4.14340 4.15198 4.22770 4.25110 4.31818 4.43108 4.47146 4.52144 4.54210 4.57745 4.61074 4.62943 4.77477 4.80962 4.87138 4.90945 4.93145 4.93696 4.99876 5.02225 5.08277 5.17978 5.18497 5.28817 5.29382 5.39112 5.52898 5.57895 5.59585 5.76105 6.23845 6.38593 6.57557 6.68252 6.79559 7.19680 7.32002 7.42740 8.94988 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.003840 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.297649 B = 7289.120976 C = 8849.717349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.063 3.937 4 C 0.509 3.491 5 O -0.590 6.590 6 C -0.096 4.096 7 C -0.093 4.093 8 C -0.087 4.087 9 C -0.110 4.110 10 C 0.524 3.476 11 O -0.581 6.581 12 N -0.592 5.592 13 C 0.208 3.792 14 C -0.539 4.539 15 H 0.025 0.975 16 C 0.013 3.987 17 N -0.950 5.950 18 Si 0.935 3.065 19 H -0.266 1.266 20 H -0.297 1.297 21 H -0.214 1.214 22 C 0.122 3.878 23 C -0.028 4.028 24 C 0.243 3.757 25 N -0.494 5.494 26 C -0.102 4.102 27 C -0.115 4.115 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.264 0.736 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.125 0.875 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.050 0.950 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 17.792 12.259 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C -0.078 4.078 4 C 0.299 3.701 5 O -0.470 6.470 6 C -0.117 4.117 7 C -0.131 4.131 8 C -0.125 4.125 9 C -0.131 4.131 10 C 0.314 3.686 11 O -0.462 6.462 12 N -0.321 5.321 13 C 0.086 3.914 14 C -0.578 4.578 15 H 0.043 0.957 16 C -0.185 4.185 17 N -0.590 5.590 18 Si 0.757 3.243 19 H -0.191 1.191 20 H -0.224 1.224 21 H -0.136 1.136 22 C -0.003 4.003 23 C -0.069 4.069 24 C -0.074 4.074 25 N -0.173 5.173 26 C -0.139 4.139 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.159 0.841 46 H 0.143 0.857 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.858 16.989 12.609 22.569 hybrid contribution -0.694 -0.817 -1.075 1.518 sum -8.553 16.173 11.533 21.627 Atomic orbital electron populations 1.21729 0.78947 1.03299 1.02235 1.47917 1.07638 1.07007 1.72888 1.22327 0.98240 0.83814 1.03430 1.21192 0.91061 0.83124 0.74756 1.90671 1.71411 1.33101 1.51844 1.21324 0.89589 0.98424 1.02328 1.21251 0.94454 0.95447 1.01943 1.21246 0.94287 0.99802 0.97192 1.21371 0.90607 1.00416 1.00728 1.20864 0.90725 0.74658 0.82394 1.90599 1.71127 1.51743 1.32747 1.47880 1.06101 1.67965 1.10138 1.19934 0.94180 0.94898 0.82357 1.21615 1.36632 0.94427 1.05093 0.95705 1.25869 0.95526 1.00549 0.96533 1.70084 1.42777 1.31113 1.15047 0.85914 0.77960 0.79959 0.80488 1.19066 1.22360 1.13560 1.21165 0.80261 0.96207 1.02688 1.19740 0.79378 1.00574 1.07164 1.29434 0.95240 0.91582 0.91140 1.81292 1.14507 1.10218 1.11234 1.21581 0.95155 0.92825 1.04359 1.21809 0.95355 1.02460 0.95632 0.92144 0.88356 0.93129 0.90758 0.88809 0.89067 0.85516 0.93724 0.91602 0.93614 0.89937 0.90032 0.91476 0.92642 0.92684 0.91623 0.89846 0.84094 0.85715 0.88847 0.89739 0.93149 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.44 127.77 1.33 2.52 16 2 N -0.62 -10.42 3.27 -871.88 -2.85 -13.27 16 3 C 0.06 0.48 8.80 127.77 1.12 1.60 16 4 C 0.51 12.38 7.08 87.66 0.62 13.00 16 5 O -0.59 -20.09 15.56 -3.05 -0.05 -20.14 16 6 C -0.10 -1.94 1.72 -11.54 -0.02 -1.96 16 7 C -0.09 -2.48 4.49 30.59 0.14 -2.34 16 8 C -0.09 -2.43 4.66 30.59 0.14 -2.29 16 9 C -0.11 -3.22 1.68 -11.54 -0.02 -3.24 16 10 C 0.52 17.23 6.82 87.66 0.60 17.83 16 11 O -0.58 -21.04 15.72 -3.01 -0.05 -21.09 16 12 N -0.59 -19.21 2.46 -826.16 -2.03 -21.25 16 13 C 0.21 7.33 3.79 85.64 0.32 7.66 16 14 C -0.54 -26.39 9.59 25.60 0.25 -26.15 16 15 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 16 C 0.01 0.68 5.47 84.66 0.46 1.14 16 17 N -0.95 -55.39 13.96 21.45 0.30 -55.09 16 18 Si 0.93 36.25 27.47 68.60 1.88 38.13 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.30 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.21 -6.58 6.54 99.48 0.65 -5.93 16 22 C 0.12 3.52 5.31 86.38 0.46 3.98 16 23 C -0.03 -0.56 6.01 28.79 0.17 -0.39 16 24 C 0.24 6.19 15.44 89.42 1.38 7.57 16 25 N -0.49 -15.52 18.55 20.03 0.37 -15.15 16 26 C -0.10 -2.06 4.89 30.59 0.15 -1.91 16 27 C -0.12 -2.13 4.84 30.60 0.15 -1.98 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.10 0.84 8.07 -2.39 -0.02 0.82 16 30 H 0.05 1.02 7.42 -2.39 -0.02 1.01 16 31 H 0.07 0.45 6.95 -2.39 -0.02 0.43 16 32 H 0.09 0.31 8.07 -2.39 -0.02 0.30 16 33 H 0.09 0.49 6.01 -2.38 -0.01 0.48 16 34 H 0.13 1.83 7.40 -2.38 -0.02 1.81 16 35 H 0.04 1.43 8.10 -2.38 -0.02 1.42 16 36 H 0.07 1.77 8.10 -2.39 -0.02 1.76 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 2.09 7.91 -2.38 -0.02 2.07 16 39 H 0.08 2.94 7.11 -2.39 -0.02 2.92 16 40 H 0.07 2.15 3.44 -2.39 -0.01 2.14 16 41 H 0.06 1.74 7.54 -2.39 -0.02 1.72 16 42 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.07 2.08 7.61 -2.39 -0.02 2.07 16 44 H 0.08 2.54 8.04 -2.38 -0.02 2.52 16 45 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 1.66 5.96 -2.38 -0.01 1.64 16 49 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.11 1.29 4.53 -2.39 -0.01 1.28 16 Total: -1.00 -76.38 396.25 5.72 -70.67 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.89 Total: 22.15 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 7.26 Total: 15.04 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -4.22 Total: -104.76 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.09 Total: -41.23 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 1.88 Total: 38.13 kcal Total: -76.38 5.72 -70.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823230880.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.614 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds