Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 113.99896 * 2 1 4 4 C 1.53003 * 109.47439 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46963 * 64.99661 * 4 3 2 6 6 C 1.36941 * 119.99979 * 272.73234 * 5 4 3 7 7 H 1.07999 * 120.00040 * 141.43552 * 6 5 4 8 8 C 1.38812 * 119.99913 * 321.43285 * 6 5 4 9 9 N 1.31623 * 119.99779 * 337.18346 * 8 6 5 10 10 Si 1.86794 * 120.00182 * 157.18850 * 8 6 5 11 11 H 1.48509 * 109.46881 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47145 * 119.99576 * 10 8 6 13 13 H 1.48499 * 109.47329 * 240.00104 * 10 8 6 14 14 C 1.46498 * 120.00057 * 92.72987 * 5 4 3 15 15 C 1.53006 * 109.47199 * 270.00127 * 14 5 4 16 16 C 1.50697 * 109.47079 * 180.02562 * 15 14 5 17 17 O 1.21297 * 120.00330 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00205 * 179.97438 * 16 15 14 19 19 C 1.40145 * 120.00366 * 185.03098 * 18 16 15 20 20 C 1.38850 * 119.99583 * 34.08555 * 19 18 16 21 21 C 1.38068 * 120.00321 * 180.02562 * 20 19 18 22 22 C 1.38883 * 119.99652 * 359.97067 * 21 20 19 23 23 N 1.39895 * 120.00519 * 179.97438 * 22 21 20 24 24 C 1.46497 * 119.99931 * 0.02562 * 23 22 21 25 25 C 1.46499 * 119.99898 * 180.02562 * 23 22 21 26 26 C 1.38886 * 119.99227 * 0.26086 * 22 21 20 27 27 C 1.38068 * 119.99592 * 359.53169 * 26 22 21 28 28 H 1.09006 * 109.47383 * 300.00213 * 1 2 3 29 29 H 1.08998 * 109.47196 * 60.00057 * 1 2 3 30 30 H 1.09005 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47634 * 59.99616 * 3 2 1 32 32 H 1.08999 * 109.47099 * 299.99723 * 3 2 1 33 33 H 1.08997 * 109.46769 * 305.00170 * 4 3 2 34 34 H 1.09001 * 109.47380 * 184.99788 * 4 3 2 35 35 H 0.97001 * 119.99424 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47189 * 150.00269 * 14 5 4 37 37 H 1.09005 * 109.47314 * 29.99889 * 14 5 4 38 38 H 1.08997 * 109.46935 * 59.99986 * 15 14 5 39 39 H 1.09004 * 109.46949 * 299.99549 * 15 14 5 40 40 H 0.97004 * 119.99720 * 5.02700 * 18 16 15 41 41 H 1.07999 * 119.99834 * 359.97438 * 20 19 18 42 42 H 1.07996 * 119.99800 * 179.97438 * 21 20 19 43 43 H 1.08998 * 109.47112 * 89.99794 * 24 23 22 44 44 H 1.08998 * 109.47674 * 209.99848 * 24 23 22 45 45 H 1.09002 * 109.47474 * 330.00053 * 24 23 22 46 46 H 1.08999 * 109.47596 * 90.00418 * 25 23 22 47 47 H 1.09009 * 109.46711 * 210.00316 * 25 23 22 48 48 H 1.09001 * 109.47275 * 329.99426 * 25 23 22 49 49 H 1.07999 * 120.00430 * 179.72209 * 26 22 21 50 50 H 1.07995 * 119.99984 * 180.18516 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0442 -0.8000 -1.3520 7 1 3.7526 -1.2885 -2.2700 8 6 4.4876 -1.5547 -0.2747 9 7 5.2468 -1.0023 0.6478 10 14 4.0070 -3.3543 -0.1341 11 1 3.1557 -3.7311 -1.2912 12 1 5.2314 -4.1945 -0.1267 13 1 3.2523 -3.5681 1.1268 14 6 4.3456 1.4024 -2.3941 15 6 3.1088 1.6612 -3.2570 16 6 3.4884 2.5231 -4.4334 17 8 4.6352 2.8945 -4.5682 18 7 2.5537 2.8815 -5.3358 19 6 2.9250 3.5935 -6.4844 20 6 4.1540 3.3521 -7.0836 21 6 4.5202 4.0538 -8.2149 22 6 3.6589 5.0007 -8.7538 23 7 4.0300 5.7121 -9.8997 24 6 5.3270 5.4580 -10.5317 25 6 3.1216 6.7113 -10.4677 26 6 2.4317 5.2454 -8.1515 27 6 2.0639 4.5405 -7.0227 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.5563 -1.5297 1.4008 36 1 5.1034 0.8927 -2.9890 37 1 4.7432 2.3518 -2.0352 38 1 2.3509 2.1709 -2.6621 39 1 2.7112 0.7118 -3.6160 40 1 1.6238 2.6465 -5.1902 41 1 4.8239 2.6160 -6.6643 42 1 5.4764 3.8662 -8.6807 43 1 5.2197 4.6702 -11.2773 44 1 5.6809 6.3690 -11.0142 45 1 6.0455 5.1455 -9.7739 46 1 3.3253 7.6839 -10.0198 47 1 3.2731 6.7689 -11.5457 48 1 2.0906 6.4245 -10.2606 49 1 1.7636 5.9849 -8.5677 50 1 1.1084 4.7286 -6.5560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839083198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = -12.121717 kcal Electronic energy + Delta-G solvation = -28763.619313 eV Core-core repulsion = 24792.473037 eV Total energy + Delta-G solvation = -3971.146277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.34795 -38.99037 -37.24487 -36.48135 -35.29688 -33.95158 -31.89625 -31.23327 -30.37140 -29.07670 -28.39630 -27.95918 -25.64990 -25.05555 -24.04301 -22.74534 -22.31743 -20.97140 -20.17732 -19.75313 -17.91091 -16.98709 -16.77218 -16.48119 -15.82384 -15.56856 -15.28041 -15.10672 -14.97898 -14.59055 -14.57478 -14.02624 -13.84635 -13.67372 -13.61379 -13.34800 -13.00499 -12.91198 -12.75052 -12.50974 -12.33325 -12.23996 -12.15192 -11.88026 -11.78378 -11.09826 -11.04127 -10.86323 -10.74571 -10.61157 -10.51414 -10.42017 -9.91482 -9.82919 -9.67817 -9.50033 -9.06125 -8.89602 -8.77308 -8.32472 -7.11364 -6.48109 -5.65815 -3.22487 1.40145 1.51003 2.92469 2.96076 3.34257 3.48498 3.55791 3.59213 3.90525 4.60512 4.69704 4.70261 4.71385 4.89864 4.98347 5.04319 5.13137 5.28525 5.34599 5.36358 5.45437 5.46222 5.51446 5.56631 5.65948 5.72103 5.78659 5.80101 5.90959 5.99239 6.05271 6.06546 6.14248 6.18305 6.32124 6.40426 6.47957 6.59152 6.60478 6.73212 6.82341 6.94926 7.08186 7.15035 7.37157 7.62453 7.67249 7.95521 8.09041 8.45665 8.65975 9.29972 9.93903 10.49779 11.36071 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.002224 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.623665 B =12585.354446 C =13307.721244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.046 3.954 4 C 0.142 3.858 5 N -0.575 5.575 6 C -0.244 4.244 7 H 0.056 0.944 8 C 0.021 3.979 9 N -0.890 5.890 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.289 1.289 14 C 0.163 3.837 15 C -0.157 4.157 16 C 0.514 3.486 17 O -0.525 6.525 18 N -0.681 5.681 19 C 0.099 3.901 20 C -0.071 4.071 21 C -0.176 4.176 22 C 0.192 3.808 23 N -0.643 5.643 24 C 0.095 3.905 25 C 0.096 3.904 26 C -0.180 4.180 27 C -0.102 4.102 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.252 0.748 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.406 0.594 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.122 0.878 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 14.076 -18.056 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C -0.033 4.033 4 C 0.015 3.985 5 N -0.294 5.294 6 C -0.373 4.373 7 H 0.074 0.926 8 C -0.179 4.179 9 N -0.532 5.532 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.216 1.216 14 C 0.035 3.965 15 C -0.200 4.200 16 C 0.303 3.697 17 O -0.400 6.400 18 N -0.327 5.327 19 C 0.004 3.996 20 C -0.092 4.092 21 C -0.198 4.198 22 C 0.092 3.908 23 N -0.357 5.357 24 C -0.048 4.048 25 C -0.047 4.047 26 C -0.202 4.202 27 C -0.123 4.123 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.241 0.759 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.140 0.860 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.436 14.135 -18.085 24.128 hybrid contribution -1.257 -0.681 0.177 1.440 sum -8.692 13.454 -17.908 24.026 Atomic orbital electron populations 1.22637 0.84432 1.01449 0.98325 1.88244 1.16358 1.27616 1.94778 1.23496 0.98920 0.84114 0.96740 1.21032 0.87557 0.96639 0.93294 1.43694 1.74680 1.02527 1.08501 1.18808 1.37331 0.81100 1.00085 0.92639 1.25051 0.96143 0.97607 0.99074 1.70033 1.33247 1.36256 1.13685 0.86335 0.77692 0.85489 0.77739 1.20270 1.22234 1.21556 1.20597 0.91607 0.94848 0.89416 1.22590 1.04378 0.98791 0.94238 1.21478 0.85114 0.79702 0.83376 1.90675 1.19754 1.53763 1.75759 1.43788 1.11874 1.56521 1.20544 1.17615 0.96253 0.96193 0.89562 1.20973 0.95900 0.99020 0.93304 1.20575 1.00256 1.00061 0.98956 1.17800 0.93485 0.92313 0.87222 1.46259 1.18578 1.42546 1.28293 1.21594 0.84735 1.00801 0.97712 1.21573 0.94057 0.91059 0.98017 1.20394 0.96496 1.04480 0.98862 1.20633 0.99858 0.94894 0.96956 0.95592 0.95373 0.90770 0.95853 0.95408 0.88367 0.93975 0.93844 0.92451 0.94133 0.89895 0.88894 0.75868 0.84682 0.85858 0.93598 0.91824 0.91225 0.93670 0.91846 0.91430 0.85971 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -7.57 10.05 -35.23 -0.35 -7.92 16 3 C 0.05 0.91 6.28 37.16 0.23 1.15 16 4 C 0.14 3.27 5.81 -4.04 -0.02 3.25 16 5 N -0.58 -14.08 2.41 -173.23 -0.42 -14.50 16 6 C -0.24 -6.64 8.80 -15.06 -0.13 -6.77 16 7 H 0.06 1.53 7.93 -52.49 -0.42 1.11 16 8 C 0.02 0.60 4.93 -17.43 -0.09 0.51 16 9 N -0.89 -26.03 11.60 55.49 0.64 -25.39 16 10 Si 0.90 22.41 29.61 -169.99 -5.03 17.37 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 C 0.16 3.50 5.00 -4.04 -0.02 3.48 16 15 C -0.16 -2.68 6.02 -27.88 -0.17 -2.85 16 16 C 0.51 8.47 7.57 -10.99 -0.08 8.39 16 17 O -0.52 -10.38 13.71 5.54 0.08 -10.30 16 18 N -0.68 -8.96 5.35 -9.82 -0.05 -9.01 16 19 C 0.10 1.34 6.27 -83.60 -0.52 0.81 16 20 C -0.07 -1.03 8.65 -39.42 -0.34 -1.37 16 21 C -0.18 -2.19 9.20 -39.41 -0.36 -2.56 16 22 C 0.19 2.18 6.56 -83.70 -0.55 1.63 16 23 N -0.64 -5.85 3.41 -187.49 -0.64 -6.49 16 24 C 0.09 0.67 10.19 59.85 0.61 1.28 16 25 C 0.10 0.62 10.18 59.85 0.61 1.23 16 26 C -0.18 -1.92 9.20 -39.40 -0.36 -2.28 16 27 C -0.10 -1.15 9.96 -39.42 -0.39 -1.54 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.50 6.32 -51.93 -0.33 0.17 16 33 H 0.10 2.63 5.63 -51.93 -0.29 2.34 16 34 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 1.33 8.00 -51.93 -0.42 0.92 16 37 H 0.04 0.87 7.83 -51.93 -0.41 0.47 16 38 H 0.08 1.31 6.34 -51.93 -0.33 0.98 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.41 4.08 8.82 -40.82 -0.36 3.72 16 41 H 0.14 2.18 6.46 -52.49 -0.34 1.84 16 42 H 0.12 1.34 6.14 -52.49 -0.32 1.02 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 45 H 0.07 0.51 6.20 -51.93 -0.32 0.19 16 46 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.30 8.07 -51.92 -0.42 -0.11 16 48 H 0.07 0.40 6.21 -51.93 -0.32 0.08 16 49 H 0.12 1.03 6.14 -52.49 -0.32 0.70 16 50 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -33.57 402.46 -8.13 -41.70 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.94 Total: 2.53 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.48 Total: 5.94 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.47 Total: -55.39 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.28 Total: -18.23 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.57 -8.13 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839083198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.581 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds