Wall clock time and date at job start Tue Mar 31 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 113.99896 * 2 1 4 4 C 1.53003 * 109.47439 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46963 * 64.99661 * 4 3 2 6 6 C 1.36941 * 119.99979 * 272.73234 * 5 4 3 7 7 H 1.07999 * 120.00040 * 141.43552 * 6 5 4 8 8 C 1.38812 * 119.99913 * 321.43285 * 6 5 4 9 9 N 1.31623 * 119.99779 * 337.18346 * 8 6 5 10 10 Si 1.86794 * 120.00182 * 157.18850 * 8 6 5 11 11 H 1.48509 * 109.46881 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47145 * 119.99576 * 10 8 6 13 13 H 1.48499 * 109.47329 * 240.00104 * 10 8 6 14 14 C 1.46498 * 120.00057 * 92.72987 * 5 4 3 15 15 C 1.53006 * 109.47199 * 270.00127 * 14 5 4 16 16 C 1.50697 * 109.47079 * 180.02562 * 15 14 5 17 17 O 1.21297 * 120.00330 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00205 * 179.97438 * 16 15 14 19 19 C 1.40145 * 120.00366 * 185.03098 * 18 16 15 20 20 C 1.38850 * 119.99583 * 34.08555 * 19 18 16 21 21 C 1.38068 * 120.00321 * 180.02562 * 20 19 18 22 22 C 1.38883 * 119.99652 * 359.97067 * 21 20 19 23 23 N 1.39895 * 120.00519 * 179.97438 * 22 21 20 24 24 C 1.46497 * 119.99931 * 0.02562 * 23 22 21 25 25 C 1.46499 * 119.99898 * 180.02562 * 23 22 21 26 26 C 1.38886 * 119.99227 * 0.26086 * 22 21 20 27 27 C 1.38068 * 119.99592 * 359.53169 * 26 22 21 28 28 H 1.09006 * 109.47383 * 300.00213 * 1 2 3 29 29 H 1.08998 * 109.47196 * 60.00057 * 1 2 3 30 30 H 1.09005 * 109.47273 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47634 * 59.99616 * 3 2 1 32 32 H 1.08999 * 109.47099 * 299.99723 * 3 2 1 33 33 H 1.08997 * 109.46769 * 305.00170 * 4 3 2 34 34 H 1.09001 * 109.47380 * 184.99788 * 4 3 2 35 35 H 0.97001 * 119.99424 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47189 * 150.00269 * 14 5 4 37 37 H 1.09005 * 109.47314 * 29.99889 * 14 5 4 38 38 H 1.08997 * 109.46935 * 59.99986 * 15 14 5 39 39 H 1.09004 * 109.46949 * 299.99549 * 15 14 5 40 40 H 0.97004 * 119.99720 * 5.02700 * 18 16 15 41 41 H 1.07999 * 119.99834 * 359.97438 * 20 19 18 42 42 H 1.07996 * 119.99800 * 179.97438 * 21 20 19 43 43 H 1.08998 * 109.47112 * 89.99794 * 24 23 22 44 44 H 1.08998 * 109.47674 * 209.99848 * 24 23 22 45 45 H 1.09002 * 109.47474 * 330.00053 * 24 23 22 46 46 H 1.08999 * 109.47596 * 90.00418 * 25 23 22 47 47 H 1.09009 * 109.46711 * 210.00316 * 25 23 22 48 48 H 1.09001 * 109.47275 * 329.99426 * 25 23 22 49 49 H 1.07999 * 120.00430 * 179.72209 * 26 22 21 50 50 H 1.07995 * 119.99984 * 180.18516 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0442 -0.8000 -1.3520 7 1 3.7526 -1.2885 -2.2700 8 6 4.4876 -1.5547 -0.2747 9 7 5.2468 -1.0023 0.6478 10 14 4.0070 -3.3543 -0.1341 11 1 3.1557 -3.7311 -1.2912 12 1 5.2314 -4.1945 -0.1267 13 1 3.2523 -3.5681 1.1268 14 6 4.3456 1.4024 -2.3941 15 6 3.1088 1.6612 -3.2570 16 6 3.4884 2.5231 -4.4334 17 8 4.6352 2.8945 -4.5682 18 7 2.5537 2.8815 -5.3358 19 6 2.9250 3.5935 -6.4844 20 6 4.1540 3.3521 -7.0836 21 6 4.5202 4.0538 -8.2149 22 6 3.6589 5.0007 -8.7538 23 7 4.0300 5.7121 -9.8997 24 6 5.3270 5.4580 -10.5317 25 6 3.1216 6.7113 -10.4677 26 6 2.4317 5.2454 -8.1515 27 6 2.0639 4.5405 -7.0227 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.5563 -1.5297 1.4008 36 1 5.1034 0.8927 -2.9890 37 1 4.7432 2.3518 -2.0352 38 1 2.3509 2.1709 -2.6621 39 1 2.7112 0.7118 -3.6160 40 1 1.6238 2.6465 -5.1902 41 1 4.8239 2.6160 -6.6643 42 1 5.4764 3.8662 -8.6807 43 1 5.2197 4.6702 -11.2773 44 1 5.6809 6.3690 -11.0142 45 1 6.0455 5.1455 -9.7739 46 1 3.3253 7.6839 -10.0198 47 1 3.2731 6.7689 -11.5457 48 1 2.0906 6.4245 -10.2606 49 1 1.7636 5.9849 -8.5677 50 1 1.1084 4.7286 -6.5560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839083198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:49 Heat of formation + Delta-G solvation = -33.600621 kcal Electronic energy + Delta-G solvation = -28764.550709 eV Core-core repulsion = 24792.473037 eV Total energy + Delta-G solvation = -3972.077672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45324 -40.01961 -38.81263 -37.46533 -36.97294 -35.02079 -33.79841 -32.12090 -31.97990 -30.30312 -29.41221 -28.97769 -27.09067 -26.42011 -25.33213 -23.94680 -23.52235 -22.22117 -21.66943 -21.03556 -18.85274 -18.71837 -18.01826 -17.60283 -17.20156 -16.76402 -16.58900 -16.43477 -16.14290 -15.88704 -15.61880 -15.54685 -15.30403 -15.04878 -14.64644 -14.58992 -14.37685 -13.96010 -13.59933 -13.53070 -13.44392 -13.36034 -13.29965 -12.93819 -12.86138 -12.85226 -12.69777 -12.35912 -12.31707 -12.26236 -11.90854 -11.86714 -11.54669 -11.51556 -11.46529 -10.85407 -10.41465 -10.23248 -9.95443 -9.84988 -8.49362 -7.94959 -7.73447 -5.34226 0.49326 0.53177 1.48089 1.51594 1.60635 1.70545 2.16317 2.32000 2.60410 2.96883 3.25548 3.38975 3.64924 3.90411 4.03921 4.06591 4.24381 4.25861 4.36445 4.43620 4.44602 4.47647 4.54661 4.60353 4.62143 4.65861 4.69303 4.78184 4.82702 4.86278 4.90061 4.90779 4.93281 4.95266 4.99766 5.08299 5.14630 5.18136 5.31595 5.40907 5.52176 5.63020 5.74641 5.81850 5.98495 6.39505 6.51181 6.55266 6.56937 6.72331 7.24975 7.28878 7.93590 8.45823 9.23920 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.002224 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.623665 B =12585.354446 C =13307.721244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.057 3.943 4 C 0.139 3.861 5 N -0.588 5.588 6 C -0.238 4.238 7 H 0.049 0.951 8 C -0.029 4.029 9 N -0.922 5.922 10 Si 0.951 3.049 11 H -0.269 1.269 12 H -0.297 1.297 13 H -0.293 1.293 14 C 0.166 3.834 15 C -0.137 4.137 16 C 0.517 3.483 17 O -0.566 6.566 18 N -0.661 5.661 19 C 0.071 3.929 20 C -0.093 4.093 21 C -0.191 4.191 22 C 0.192 3.808 23 N -0.646 5.646 24 C 0.089 3.911 25 C 0.090 3.910 26 C -0.180 4.180 27 C -0.091 4.091 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.247 0.753 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.423 0.577 41 H 0.106 0.894 42 H 0.129 0.871 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.151 0.849 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 15.848 -19.977 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.022 4.022 4 C 0.013 3.987 5 N -0.309 5.309 6 C -0.369 4.369 7 H 0.067 0.933 8 C -0.225 4.225 9 N -0.567 5.567 10 Si 0.781 3.219 11 H -0.194 1.194 12 H -0.225 1.225 13 H -0.219 1.219 14 C 0.040 3.960 15 C -0.179 4.179 16 C 0.306 3.694 17 O -0.444 6.444 18 N -0.308 5.308 19 C -0.024 4.024 20 C -0.114 4.114 21 C -0.214 4.214 22 C 0.090 3.910 23 N -0.359 5.359 24 C -0.054 4.054 25 C -0.053 4.053 26 C -0.203 4.203 27 C -0.112 4.112 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.261 0.739 41 H 0.124 0.876 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.168 0.832 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.471 15.941 -20.071 27.687 hybrid contribution -0.322 -1.101 0.614 1.301 sum -10.793 14.840 -19.456 26.744 Atomic orbital electron populations 1.22833 0.81633 1.02550 1.00184 1.88163 1.19513 1.28562 1.95184 1.23241 0.96033 0.84140 0.98761 1.20975 0.90507 0.96017 0.91239 1.43842 1.75376 1.02021 1.09642 1.18938 1.35749 0.82586 0.99590 0.93321 1.25662 0.96709 1.00816 0.99334 1.70151 1.34897 1.37337 1.14294 0.85477 0.77153 0.81760 0.77542 1.19362 1.22457 1.21945 1.20510 0.93062 0.93632 0.88839 1.22189 1.02227 0.99375 0.94092 1.21239 0.84955 0.79533 0.83662 1.90672 1.21493 1.55500 1.76710 1.43455 1.12070 1.55572 1.19675 1.17769 0.96780 0.97871 0.89993 1.20882 0.96383 0.99529 0.94599 1.20643 1.01083 1.00775 0.98874 1.17983 0.93490 0.91759 0.87789 1.46562 1.19484 1.42326 1.27492 1.21731 0.83974 1.02098 0.97602 1.21782 0.93895 0.90469 0.99120 1.20756 0.96500 1.04599 0.98456 1.20920 1.00246 0.93390 0.96636 0.93779 0.93304 0.90195 0.93622 0.93262 0.92180 0.93079 0.94341 0.95396 0.94584 0.87703 0.88740 0.73874 0.87611 0.85364 0.92969 0.89754 0.92067 0.93076 0.89982 0.90668 0.83166 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -16.40 10.05 -148.98 -1.50 -17.89 16 3 C 0.06 2.13 6.28 71.98 0.45 2.59 16 4 C 0.14 6.45 5.81 86.38 0.50 6.95 16 5 N -0.59 -29.23 2.41 -701.99 -1.69 -30.92 16 6 C -0.24 -13.20 8.80 84.03 0.74 -12.46 16 7 H 0.05 2.72 7.93 -2.91 -0.02 2.70 16 8 C -0.03 -1.63 4.93 84.86 0.42 -1.21 16 9 N -0.92 -55.65 11.60 21.65 0.25 -55.39 16 10 Si 0.95 46.86 29.61 68.60 2.03 48.89 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 13 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 14 C 0.17 7.31 5.00 86.38 0.43 7.74 16 15 C -0.14 -4.57 6.02 29.85 0.18 -4.39 16 16 C 0.52 17.02 7.57 87.66 0.66 17.68 16 17 O -0.57 -23.22 13.71 -3.08 -0.04 -23.26 16 18 N -0.66 -16.61 5.35 -303.35 -1.62 -18.23 16 19 C 0.07 1.85 6.27 38.11 0.24 2.09 16 20 C -0.09 -2.77 8.65 22.38 0.19 -2.58 16 21 C -0.19 -4.80 9.20 22.38 0.21 -4.59 16 22 C 0.19 4.04 6.56 38.16 0.25 4.29 16 23 N -0.65 -10.25 3.41 -747.11 -2.55 -12.80 16 24 C 0.09 1.11 10.19 127.77 1.30 2.41 16 25 C 0.09 0.85 10.18 127.77 1.30 2.15 16 26 C -0.18 -3.33 9.20 22.38 0.21 -3.12 16 27 C -0.09 -1.81 9.96 22.38 0.22 -1.59 16 28 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.62 6.32 -2.39 -0.02 1.61 16 33 H 0.06 3.31 5.63 -2.39 -0.01 3.29 16 34 H 0.05 2.20 7.86 -2.39 -0.02 2.18 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.03 1.36 8.00 -2.39 -0.02 1.34 16 37 H 0.04 1.59 7.83 -2.38 -0.02 1.57 16 38 H 0.10 3.06 6.34 -2.39 -0.02 3.04 16 39 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 40 H 0.42 7.46 8.82 -92.71 -0.82 6.64 16 41 H 0.11 3.71 6.46 -2.91 -0.02 3.69 16 42 H 0.13 2.91 6.14 -2.91 -0.02 2.89 16 43 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 0.70 8.07 -2.39 -0.02 0.68 16 45 H 0.06 0.87 6.20 -2.39 -0.01 0.85 16 46 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.08 0.50 8.07 -2.38 -0.02 0.48 16 48 H 0.07 0.61 6.21 -2.39 -0.01 0.59 16 49 H 0.15 1.89 6.14 -2.91 -0.02 1.87 16 50 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -75.56 402.46 3.56 -72.00 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.13 Total: 19.68 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 8.56 Total: 17.93 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -5.61 Total: -117.35 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.54 Total: -41.15 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.56 3.56 -72.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839083198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.397 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds