Wall clock time and date at job start Tue Mar 31 2020 18:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36004 * 116.99846 * 2 1 4 4 C 1.38703 * 119.98330 * 180.02562 * 3 2 1 5 5 C 1.38107 * 120.01842 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.98242 * 359.97438 * 5 4 3 7 7 N 1.39939 * 120.01869 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.46500 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46998 * 89.99525 * 9 7 6 11 11 N 1.46902 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99919 * 293.94915 * 11 10 9 13 13 C 1.46906 * 110.99514 * 170.00288 * 11 10 9 14 14 C 1.50705 * 109.46871 * 189.99992 * 13 11 10 15 15 O 1.21283 * 119.99519 * 359.97438 * 14 13 11 16 16 N 1.34774 * 119.99951 * 179.97438 * 14 13 11 17 17 C 1.46497 * 119.99771 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46972 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99905 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00182 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99680 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46976 * 90.00506 * 22 20 18 24 24 H 1.48504 * 109.47008 * 210.00098 * 22 20 18 25 25 H 1.48499 * 109.47652 * 330.00226 * 22 20 18 26 26 C 1.38858 * 119.96368 * 0.27071 * 6 5 4 27 27 C 1.38111 * 119.97813 * 359.47090 * 26 6 5 28 28 H 1.09000 * 109.47374 * 299.99684 * 1 2 3 29 29 H 1.09002 * 109.47640 * 59.99981 * 1 2 3 30 30 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.98384 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.00618 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.47177 * 270.00495 * 8 7 6 34 34 H 1.09002 * 109.47019 * 30.00254 * 8 7 6 35 35 H 1.09001 * 109.47429 * 150.00421 * 8 7 6 36 36 H 1.08993 * 109.47452 * 329.99604 * 9 7 6 37 37 H 1.09000 * 109.47175 * 209.99394 * 9 7 6 38 38 H 1.09000 * 109.47050 * 299.99945 * 10 9 7 39 39 H 1.09001 * 109.46801 * 60.00058 * 10 9 7 40 40 H 1.08997 * 109.46955 * 60.00491 * 12 11 10 41 41 H 1.09001 * 109.46689 * 180.02562 * 12 11 10 42 42 H 1.08992 * 109.47393 * 300.00487 * 12 11 10 43 43 H 1.08999 * 109.46669 * 309.99366 * 13 11 10 44 44 H 1.08990 * 109.47425 * 69.99908 * 13 11 10 45 45 H 0.96996 * 120.00113 * 0.02562 * 16 14 13 46 46 H 1.08993 * 109.47354 * 300.00192 * 17 16 14 47 47 H 1.09002 * 109.47378 * 60.00304 * 17 16 14 48 48 H 0.96993 * 120.00087 * 180.02562 * 21 20 18 49 49 H 1.07995 * 120.01077 * 179.70932 * 26 6 5 50 50 H 1.08001 * 119.99039 * 180.25490 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0592 2.5142 0.0000 6 6 3.3033 3.6790 0.0005 7 7 3.9385 4.9259 0.0005 8 6 5.4015 5.0027 0.0005 9 6 3.1406 6.1545 0.0005 10 6 2.8627 6.5822 1.4431 11 7 2.0621 7.8138 1.4430 12 6 2.8260 8.9383 0.8862 13 6 1.5756 8.1255 2.7937 14 6 0.5665 9.2423 2.7189 15 8 0.2811 9.7308 1.6461 16 7 -0.0188 9.6982 3.8441 17 6 -0.9993 10.7842 3.7713 18 6 -1.4994 11.1030 5.1567 19 1 -1.1241 10.5521 6.0064 20 6 -2.4354 12.0988 5.3396 21 7 -2.8921 12.7701 4.3050 22 14 -3.0547 12.4945 7.0569 23 1 -2.1909 13.5372 7.6666 24 1 -4.4512 12.9932 6.9768 25 1 -3.0145 11.2676 7.8926 26 6 1.9166 3.6058 0.0062 27 6 1.2905 2.3748 0.0003 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0192 0.3780 -0.0014 32 1 5.1377 2.5702 0.0000 33 1 5.7644 5.0216 1.0283 34 1 5.8110 4.1330 -0.5133 35 1 5.7178 5.9105 -0.5132 36 1 2.1964 5.9746 -0.5133 37 1 3.6891 6.9440 -0.5132 38 1 2.3142 5.7927 1.9568 39 1 3.8070 6.7622 1.9570 40 1 3.1145 8.7090 -0.1396 41 1 2.2100 9.8374 0.8983 42 1 3.7204 9.1029 1.4869 43 1 1.1069 7.2406 3.2241 44 1 2.4130 8.4338 3.4194 45 1 0.2097 9.3077 4.7020 46 1 -0.5302 11.6691 3.3414 47 1 -1.8367 10.4764 3.1451 48 1 -3.5503 13.4708 4.4337 49 1 1.3280 4.5113 0.0114 50 1 0.2120 2.3177 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844398761.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:30 Heat of formation + Delta-G solvation = -47.614235 kcal Electronic energy + Delta-G solvation = -28090.528053 eV Core-core repulsion = 24117.842705 eV Total energy + Delta-G solvation = -3972.685348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08603 -40.69080 -39.40250 -38.01073 -36.28252 -35.94462 -34.34032 -32.31688 -31.34895 -30.16795 -29.68280 -28.42489 -28.24576 -26.83405 -25.28536 -24.31586 -23.28424 -22.33198 -21.33779 -21.26937 -19.19971 -18.92677 -17.79687 -17.64241 -17.42437 -17.03277 -16.73712 -16.51679 -16.34743 -16.06703 -15.87722 -15.54476 -15.43079 -15.06241 -14.76696 -14.57778 -14.20943 -14.14545 -13.92625 -13.77979 -13.73433 -13.50510 -13.41307 -13.05043 -12.93376 -12.85071 -12.75420 -12.67220 -12.52986 -12.42913 -12.22039 -12.05704 -11.83018 -11.48642 -11.47496 -10.79974 -10.68599 -10.19755 -9.90808 -9.79715 -9.29980 -8.29265 -7.93280 -6.45759 0.43827 0.70902 1.42749 1.45079 1.56319 1.80779 2.05062 2.32912 2.52378 2.58757 2.92959 3.05466 3.16656 3.85791 3.91121 3.96604 4.01100 4.09443 4.30517 4.31802 4.34568 4.35460 4.43056 4.44348 4.49324 4.53503 4.58171 4.62658 4.66909 4.75734 4.80146 4.83242 4.94694 4.99492 5.11273 5.12082 5.17853 5.20325 5.25275 5.37808 5.49970 5.52609 5.70279 5.74586 5.85157 5.90450 6.05963 6.41385 6.47101 6.65664 6.68842 6.95946 7.23845 7.54281 8.82839 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.001934 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.488739 B =14477.370739 C =15910.039535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.340 6.340 3 C 0.050 3.950 4 C -0.112 4.112 5 C -0.159 4.159 6 C 0.176 3.824 7 N -0.633 5.633 8 C 0.090 3.910 9 C 0.133 3.867 10 C 0.048 3.952 11 N -0.540 5.540 12 C 0.022 3.978 13 C 0.051 3.949 14 C 0.495 3.505 15 O -0.583 6.583 16 N -0.711 5.711 17 C 0.269 3.731 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 C -0.169 4.169 27 C -0.164 4.164 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.035 0.965 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.407 0.593 46 H -0.013 1.013 47 H -0.015 1.015 48 H 0.268 0.732 49 H 0.125 0.875 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.285 -24.067 -6.856 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.255 6.255 3 C 0.004 3.996 4 C -0.132 4.132 5 C -0.181 4.181 6 C 0.075 3.925 7 N -0.346 5.346 8 C -0.052 4.052 9 C 0.009 3.991 10 C -0.081 4.081 11 N -0.264 5.264 12 C -0.126 4.126 13 C -0.080 4.080 14 C 0.282 3.718 15 O -0.463 6.463 16 N -0.362 5.362 17 C 0.146 3.854 18 C -0.593 4.593 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.808 3.192 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.179 1.179 26 C -0.191 4.191 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.243 0.757 46 H 0.004 0.996 47 H 0.003 0.997 48 H 0.077 0.923 49 H 0.143 0.857 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.734 -23.689 -7.979 30.080 hybrid contribution -0.359 0.906 1.353 1.668 sum 16.374 -22.782 -6.626 28.828 Atomic orbital electron populations 1.23201 0.77359 1.05058 1.01621 1.86008 1.22588 1.27028 1.89893 1.19026 0.92822 0.84301 1.03413 1.20409 0.91277 0.98612 1.02858 1.20705 1.00459 0.89743 1.07187 1.17914 0.91550 0.86046 0.96986 1.46442 1.05646 1.01814 1.80670 1.21782 0.78280 1.03473 1.01667 1.21284 0.96463 0.85989 0.95341 1.22535 0.95932 0.90897 0.98716 1.61490 1.39921 1.04447 1.20592 1.22505 0.95703 0.93960 1.00414 1.21926 0.97029 0.97417 0.91672 1.21311 0.82559 0.84344 0.83604 1.90613 1.64834 1.60793 1.30060 1.46198 1.42859 1.37569 1.09569 1.18489 0.85973 0.84235 0.96690 1.21629 1.24887 1.19909 0.92920 0.89836 1.26078 0.96067 0.95339 1.02248 1.70137 1.30736 1.23364 1.32686 0.85159 0.77233 0.79026 0.77809 1.19589 1.21000 1.17932 1.20684 0.93152 0.97863 1.07432 1.21174 1.00399 0.91742 1.05021 0.92533 0.92426 0.86597 0.84229 0.83349 0.93091 0.90366 0.90568 0.90989 0.89738 0.90808 0.93645 0.89921 0.92794 0.94633 0.86058 0.89773 0.75721 0.99554 0.99659 0.92275 0.85695 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.34 -6.74 10.50 -93.59 -0.98 -7.73 16 3 C 0.05 1.03 6.69 22.49 0.15 1.18 16 4 C -0.11 -2.04 9.98 22.35 0.22 -1.82 16 5 C -0.16 -2.63 9.20 22.39 0.21 -2.42 16 6 C 0.18 3.29 6.55 38.14 0.25 3.54 16 7 N -0.63 -10.09 3.02 -722.00 -2.18 -12.26 16 8 C 0.09 0.94 10.23 127.77 1.31 2.25 16 9 C 0.13 2.33 5.12 86.38 0.44 2.77 16 10 C 0.05 0.92 5.28 86.31 0.46 1.37 16 11 N -0.54 -13.91 4.50 -927.02 -4.17 -18.08 16 12 C 0.02 0.56 8.96 127.69 1.14 1.71 16 13 C 0.05 1.34 5.45 85.56 0.47 1.81 16 14 C 0.49 19.55 7.52 87.66 0.66 20.20 16 15 O -0.58 -28.53 14.33 -3.04 -0.04 -28.57 16 16 N -0.71 -29.81 5.55 -466.79 -2.59 -32.40 16 17 C 0.27 14.79 5.43 85.63 0.46 15.26 16 18 C -0.56 -30.20 9.28 25.60 0.24 -29.97 16 19 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 20 C 0.00 0.12 5.46 84.66 0.46 0.59 16 21 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 22 Si 0.98 42.27 29.54 68.60 2.03 44.29 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 C -0.17 -3.48 9.20 22.39 0.21 -3.27 16 27 C -0.16 -3.29 9.03 22.35 0.20 -3.09 16 28 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 29 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.15 1.72 6.14 -2.91 -0.02 1.70 16 33 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.08 0.64 6.20 -2.39 -0.01 0.62 16 35 H 0.08 0.64 7.89 -2.39 -0.02 0.62 16 36 H 0.07 1.46 6.21 -2.39 -0.01 1.45 16 37 H 0.08 1.33 6.31 -2.39 -0.02 1.31 16 38 H 0.07 1.47 7.93 -2.39 -0.02 1.45 16 39 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 40 H 0.08 1.78 6.47 -2.39 -0.02 1.76 16 41 H 0.05 1.84 5.82 -2.39 -0.01 1.83 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.12 2.69 7.93 -2.39 -0.02 2.67 16 44 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 45 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.13 2.63 6.15 -2.91 -0.02 2.61 16 50 H 0.13 2.31 6.29 -2.91 -0.02 2.29 16 Total: -1.00 -74.89 403.13 0.51 -74.37 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.18 Total: 24.86 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.99 Total: 11.51 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -8.65 Total: -118.73 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.03 Total: -36.30 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -74.89 0.51 -74.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844398761.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.760 kcal (2) G-P(sol) polarization free energy of solvation -74.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds