Wall clock time and date at job start Tue Mar 31 2020 18:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36004 * 116.99846 * 2 1 4 4 C 1.38703 * 119.98330 * 180.02562 * 3 2 1 5 5 C 1.38107 * 120.01842 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.98242 * 359.97438 * 5 4 3 7 7 N 1.39939 * 120.01869 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.46500 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46998 * 89.99525 * 9 7 6 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.46504 * 119.99881 * 270.00232 * 11 10 9 13 13 C 1.34773 * 120.00149 * 89.99434 * 11 10 9 14 14 O 1.21593 * 120.00080 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00437 * 180.02562 * 13 11 10 16 16 C 1.46496 * 120.00426 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.47421 * 180.02562 * 16 15 13 18 18 C 1.50691 * 109.47225 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00045 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00306 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00410 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47173 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47107 * 120.00366 * 22 20 18 25 25 H 1.48502 * 109.47117 * 240.00556 * 22 20 18 26 26 C 1.38858 * 119.96368 * 0.27071 * 6 5 4 27 27 C 1.38111 * 119.97813 * 359.47090 * 26 6 5 28 28 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47374 * 299.99684 * 1 2 3 30 30 H 1.09002 * 109.47640 * 59.99981 * 1 2 3 31 31 H 1.07999 * 119.98384 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.00618 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.47177 * 270.00495 * 8 7 6 34 34 H 1.09002 * 109.47019 * 30.00254 * 8 7 6 35 35 H 1.09001 * 109.47429 * 150.00421 * 8 7 6 36 36 H 1.08993 * 109.47452 * 329.99604 * 9 7 6 37 37 H 1.09000 * 109.47175 * 209.99394 * 9 7 6 38 38 H 1.09000 * 109.47050 * 299.99945 * 10 9 7 39 39 H 1.09001 * 109.46801 * 60.00058 * 10 9 7 40 40 H 1.08997 * 109.47514 * 90.00045 * 12 11 10 41 41 H 1.09003 * 109.46763 * 209.99449 * 12 11 10 42 42 H 1.08995 * 109.47081 * 329.99868 * 12 11 10 43 43 H 0.97006 * 119.99620 * 0.02562 * 15 13 11 44 44 H 1.09004 * 109.46760 * 299.99930 * 16 15 13 45 45 H 1.08997 * 109.47121 * 59.99615 * 16 15 13 46 46 H 1.09004 * 109.46351 * 299.99580 * 17 16 15 47 47 H 1.08997 * 109.47095 * 59.98926 * 17 16 15 48 48 H 0.96997 * 120.00180 * 179.97438 * 21 20 18 49 49 H 1.07995 * 120.01077 * 179.70932 * 26 6 5 50 50 H 1.08001 * 119.99039 * 180.25490 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0592 2.5142 0.0000 6 6 3.3033 3.6790 0.0005 7 7 3.9385 4.9259 0.0005 8 6 5.4015 5.0027 0.0005 9 6 3.1406 6.1545 0.0005 10 6 2.8627 6.5822 1.4431 11 7 2.0642 7.8105 1.4431 12 6 2.7288 9.1161 1.4430 13 6 0.7184 7.7393 1.4431 14 8 0.1668 6.6557 1.4435 15 7 -0.0162 8.8693 1.4425 16 6 -1.4791 8.7920 1.4431 17 6 -2.0646 10.2055 1.4417 18 6 -3.5694 10.1260 1.4416 19 1 -4.0593 9.1634 1.4420 20 6 -4.3210 11.2819 1.4409 21 7 -3.7245 12.4541 1.4399 22 14 -6.1864 11.1833 1.4401 23 1 -6.6068 9.7591 1.4409 24 1 -6.7182 11.8566 2.6521 25 1 -6.7171 11.8558 0.2271 26 6 1.9166 3.6058 0.0062 27 6 1.2905 2.3748 0.0003 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0192 0.3780 -0.0014 32 1 5.1377 2.5702 0.0000 33 1 5.7644 5.0216 1.0283 34 1 5.8110 4.1330 -0.5133 35 1 5.7178 5.9105 -0.5132 36 1 2.1964 5.9746 -0.5133 37 1 3.6891 6.9440 -0.5132 38 1 2.3142 5.7927 1.9568 39 1 3.8070 6.7622 1.9570 40 1 2.8935 9.4399 0.4153 41 1 2.1004 9.8436 1.9568 42 1 3.6867 9.0362 1.9567 43 1 0.4238 9.7338 1.4418 44 1 -1.8151 8.2591 0.5535 45 1 -1.8146 8.2602 2.3335 46 1 -1.7287 10.7387 2.3311 47 1 -1.7291 10.7369 0.5511 48 1 -4.2531 13.2673 1.4390 49 1 1.3280 4.5113 0.0114 50 1 0.2120 2.3177 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845104287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:40 Heat of formation + Delta-G solvation = -25.123552 kcal Electronic energy + Delta-G solvation = -28547.899533 eV Core-core repulsion = 24576.189455 eV Total energy + Delta-G solvation = -3971.710078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30660 -39.84194 -38.44579 -36.23902 -35.08088 -34.81545 -32.86827 -31.46873 -30.52974 -29.42212 -28.94396 -27.58768 -26.74612 -25.58923 -24.45585 -23.25116 -22.18985 -21.02709 -20.66724 -19.63284 -18.39074 -17.82556 -17.00832 -16.61171 -16.41247 -15.93528 -15.74075 -15.55070 -14.95226 -14.81956 -14.56073 -14.51298 -14.06420 -13.83191 -13.72563 -13.46979 -13.17458 -13.02948 -12.79832 -12.76911 -12.69888 -12.43669 -12.39367 -12.29347 -12.17911 -11.82495 -11.36818 -11.17700 -11.06892 -11.02885 -10.66437 -10.62124 -10.34207 -9.91702 -9.57798 -9.52798 -9.25745 -9.04240 -8.76401 -8.48447 -8.24205 -7.11315 -6.10479 -4.12915 1.30812 1.57093 2.65466 3.18051 3.27701 3.31377 3.35465 3.40865 3.52619 3.79943 4.27683 4.44781 4.68733 4.70171 4.85478 4.92405 4.97674 4.99683 5.03698 5.06314 5.18940 5.25359 5.26270 5.26827 5.34854 5.38254 5.41183 5.45017 5.53279 5.56233 5.60504 5.90890 5.94193 6.00079 6.22183 6.24307 6.38511 6.44099 6.51675 6.59396 6.75930 6.98249 7.08692 7.18298 7.24122 7.48917 7.54393 7.61704 7.88798 8.22976 8.35086 8.90846 8.96264 9.51942 11.01256 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.002298 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.207517 B =12180.552167 C =14337.822812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.325 6.325 3 C 0.067 3.933 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.180 3.820 7 N -0.633 5.633 8 C 0.096 3.904 9 C 0.111 3.889 10 C 0.118 3.882 11 N -0.639 5.639 12 C 0.080 3.920 13 C 0.699 3.301 14 O -0.593 6.593 15 N -0.737 5.737 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.146 4.146 27 C -0.155 4.155 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.393 0.607 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.261 0.739 49 H 0.135 0.865 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.452 -16.344 -3.098 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.239 6.239 3 C 0.021 3.979 4 C -0.128 4.128 5 C -0.183 4.183 6 C 0.080 3.920 7 N -0.346 5.346 8 C -0.047 4.047 9 C -0.014 4.014 10 C -0.007 4.007 11 N -0.378 5.378 12 C -0.064 4.064 13 C 0.400 3.600 14 O -0.471 6.471 15 N -0.392 5.392 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.168 4.168 27 C -0.174 4.174 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.228 0.772 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.153 0.847 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 20.133 -16.974 -3.097 26.515 hybrid contribution -1.003 0.880 0.045 1.335 sum 19.130 -16.094 -3.053 25.185 Atomic orbital electron populations 1.22987 0.78802 1.03465 1.01400 1.86020 1.20975 1.27052 1.89837 1.18818 0.92221 0.84064 1.02765 1.20092 0.91238 0.97695 1.03771 1.20439 0.99271 0.90322 1.08227 1.17749 0.91575 0.85175 0.97479 1.46268 1.04589 1.02417 1.81354 1.21602 0.79877 1.02294 1.00929 1.21835 0.96594 0.85701 0.97300 1.21706 0.94906 0.86886 0.97223 1.46986 1.04549 1.06592 1.79647 1.21724 0.98230 0.84748 1.01655 1.16019 0.80771 0.85132 0.78060 1.90881 1.70522 1.27287 1.58435 1.45694 1.08638 1.06680 1.78201 1.21595 0.74888 1.01225 1.00637 1.19323 0.96042 0.89345 0.97746 1.21084 0.90788 0.92839 1.51086 0.92172 1.25001 0.98977 0.95347 0.95021 1.69966 1.35520 0.97310 1.50566 0.86457 0.85224 0.78293 0.77603 1.19563 1.20947 1.20941 1.20754 0.92616 0.98344 1.05064 1.21067 0.99934 0.91718 1.04716 0.88638 0.92747 0.92857 0.85576 0.85526 0.93629 0.91506 0.91718 0.90173 0.90955 0.89607 0.90951 0.92790 0.91109 0.91164 0.77204 0.92781 0.92798 0.96033 0.96011 0.92922 0.84695 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.82 10.50 -19.75 -0.21 -4.03 16 3 C 0.07 0.83 6.69 -39.24 -0.26 0.56 16 4 C -0.11 -1.20 9.98 -39.46 -0.39 -1.59 16 5 C -0.16 -1.66 9.20 -39.40 -0.36 -2.03 16 6 C 0.18 2.10 6.55 -83.70 -0.55 1.55 16 7 N -0.63 -6.26 3.02 -179.56 -0.54 -6.81 16 8 C 0.10 0.64 10.23 59.85 0.61 1.26 16 9 C 0.11 1.16 5.52 -4.04 -0.02 1.14 16 10 C 0.12 1.34 5.78 -4.04 -0.02 1.32 16 11 N -0.64 -8.17 2.87 -187.34 -0.54 -8.71 16 12 C 0.08 0.73 10.25 59.85 0.61 1.34 16 13 C 0.70 12.14 8.28 -86.92 -0.72 11.42 16 14 O -0.59 -12.33 15.92 5.28 0.08 -12.25 16 15 N -0.74 -13.06 5.42 -65.23 -0.35 -13.41 16 16 C 0.14 2.98 5.61 -4.04 -0.02 2.96 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.15 -1.93 9.20 -39.40 -0.36 -2.30 16 27 C -0.16 -1.97 9.03 -39.45 -0.36 -2.33 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.01 6.14 -52.49 -0.32 0.68 16 33 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.07 0.39 6.20 -51.93 -0.32 0.07 16 35 H 0.06 0.35 7.89 -51.93 -0.41 -0.06 16 36 H 0.08 1.04 6.21 -51.93 -0.32 0.72 16 37 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 38 H 0.09 1.22 7.42 -51.93 -0.39 0.83 16 39 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 42 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 43 H 0.39 6.06 6.20 -40.82 -0.25 5.80 16 44 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.14 2.00 6.15 -52.49 -0.32 1.67 16 50 H 0.13 1.48 6.29 -52.49 -0.33 1.15 16 LS Contribution 406.64 15.07 6.13 6.13 Total: -1.00 -33.34 406.64 -9.07 -42.41 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.95 Total: 4.03 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.41 Total: 1.58 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.70 Total: -54.18 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.12 Total: -16.27 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.34 -9.07 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845104287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.290 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds