Wall clock time and date at job start Tue Mar 31 2020 18:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36004 * 116.99846 * 2 1 4 4 C 1.38703 * 119.98330 * 180.02562 * 3 2 1 5 5 C 1.38107 * 120.01842 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.98242 * 359.97438 * 5 4 3 7 7 N 1.39939 * 120.01869 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.46500 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46998 * 89.99525 * 9 7 6 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.46504 * 119.99881 * 270.00232 * 11 10 9 13 13 C 1.34773 * 120.00149 * 89.99434 * 11 10 9 14 14 O 1.21593 * 120.00080 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00437 * 180.02562 * 13 11 10 16 16 C 1.46496 * 120.00426 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.47421 * 180.02562 * 16 15 13 18 18 C 1.50691 * 109.47225 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00045 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00306 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99734 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00410 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47173 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47107 * 120.00366 * 22 20 18 25 25 H 1.48502 * 109.47117 * 240.00556 * 22 20 18 26 26 C 1.38858 * 119.96368 * 0.27071 * 6 5 4 27 27 C 1.38111 * 119.97813 * 359.47090 * 26 6 5 28 28 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47374 * 299.99684 * 1 2 3 30 30 H 1.09002 * 109.47640 * 59.99981 * 1 2 3 31 31 H 1.07999 * 119.98384 * 0.02562 * 4 3 2 32 32 H 1.07996 * 120.00618 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.47177 * 270.00495 * 8 7 6 34 34 H 1.09002 * 109.47019 * 30.00254 * 8 7 6 35 35 H 1.09001 * 109.47429 * 150.00421 * 8 7 6 36 36 H 1.08993 * 109.47452 * 329.99604 * 9 7 6 37 37 H 1.09000 * 109.47175 * 209.99394 * 9 7 6 38 38 H 1.09000 * 109.47050 * 299.99945 * 10 9 7 39 39 H 1.09001 * 109.46801 * 60.00058 * 10 9 7 40 40 H 1.08997 * 109.47514 * 90.00045 * 12 11 10 41 41 H 1.09003 * 109.46763 * 209.99449 * 12 11 10 42 42 H 1.08995 * 109.47081 * 329.99868 * 12 11 10 43 43 H 0.97006 * 119.99620 * 0.02562 * 15 13 11 44 44 H 1.09004 * 109.46760 * 299.99930 * 16 15 13 45 45 H 1.08997 * 109.47121 * 59.99615 * 16 15 13 46 46 H 1.09004 * 109.46351 * 299.99580 * 17 16 15 47 47 H 1.08997 * 109.47095 * 59.98926 * 17 16 15 48 48 H 0.96997 * 120.00180 * 179.97438 * 21 20 18 49 49 H 1.07995 * 120.01077 * 179.70932 * 26 6 5 50 50 H 1.08001 * 119.99039 * 180.25490 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4315 1.2840 -0.0005 5 6 4.0592 2.5142 0.0000 6 6 3.3033 3.6790 0.0005 7 7 3.9385 4.9259 0.0005 8 6 5.4015 5.0027 0.0005 9 6 3.1406 6.1545 0.0005 10 6 2.8627 6.5822 1.4431 11 7 2.0642 7.8105 1.4431 12 6 2.7288 9.1161 1.4430 13 6 0.7184 7.7393 1.4431 14 8 0.1668 6.6557 1.4435 15 7 -0.0162 8.8693 1.4425 16 6 -1.4791 8.7920 1.4431 17 6 -2.0646 10.2055 1.4417 18 6 -3.5694 10.1260 1.4416 19 1 -4.0593 9.1634 1.4420 20 6 -4.3210 11.2819 1.4409 21 7 -3.7245 12.4541 1.4399 22 14 -6.1864 11.1833 1.4401 23 1 -6.6068 9.7591 1.4409 24 1 -6.7182 11.8566 2.6521 25 1 -6.7171 11.8558 0.2271 26 6 1.9166 3.6058 0.0062 27 6 1.2905 2.3748 0.0003 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0192 0.3780 -0.0014 32 1 5.1377 2.5702 0.0000 33 1 5.7644 5.0216 1.0283 34 1 5.8110 4.1330 -0.5133 35 1 5.7178 5.9105 -0.5132 36 1 2.1964 5.9746 -0.5133 37 1 3.6891 6.9440 -0.5132 38 1 2.3142 5.7927 1.9568 39 1 3.8070 6.7622 1.9570 40 1 2.8935 9.4399 0.4153 41 1 2.1004 9.8436 1.9568 42 1 3.6867 9.0362 1.9567 43 1 0.4238 9.7338 1.4418 44 1 -1.8151 8.2591 0.5535 45 1 -1.8146 8.2602 2.3335 46 1 -1.7287 10.7387 2.3311 47 1 -1.7291 10.7369 0.5511 48 1 -4.2531 13.2673 1.4390 49 1 1.3280 4.5113 0.0114 50 1 0.2120 2.3177 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845104287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:39 Heat of formation + Delta-G solvation = -45.773336 kcal Electronic energy + Delta-G solvation = -28548.794975 eV Core-core repulsion = 24576.189455 eV Total energy + Delta-G solvation = -3972.605520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33972 -40.97192 -39.30439 -37.32504 -36.51006 -36.03290 -34.81254 -32.41400 -31.80241 -30.75937 -29.83714 -28.32741 -27.66794 -26.94857 -25.80512 -24.30848 -23.14538 -22.78794 -21.55387 -20.96048 -19.28523 -19.04136 -18.49586 -17.86107 -17.45579 -17.17825 -16.75600 -16.55616 -16.50487 -15.83798 -15.78280 -15.62281 -15.15045 -15.11113 -14.86521 -14.58984 -14.28145 -14.08188 -13.95623 -13.94282 -13.56523 -13.43981 -13.38991 -13.20240 -13.02909 -12.95764 -12.89658 -12.52177 -12.50545 -12.26830 -12.15985 -11.92482 -11.66977 -11.53198 -11.46875 -11.15634 -10.61455 -10.39573 -10.11893 -9.94233 -9.52381 -8.24955 -7.94811 -6.34929 0.40279 0.66723 1.40374 1.41263 1.53777 1.59969 2.12044 2.29704 2.41173 2.52811 2.89405 3.09869 3.10336 3.80897 3.90232 3.97445 4.13651 4.21669 4.27933 4.33689 4.37298 4.39702 4.44767 4.46694 4.50139 4.53855 4.63938 4.65902 4.69900 4.72496 4.82451 4.84887 4.89433 4.96676 5.00194 5.09486 5.17571 5.29798 5.34338 5.49264 5.51549 5.54047 5.58130 5.72015 5.77874 5.90736 6.16496 6.35879 6.44280 6.64582 6.78028 6.98995 7.34323 7.56439 8.87176 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.002298 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.207517 B =12180.552167 C =14337.822812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.336 6.336 3 C 0.052 3.948 4 C -0.110 4.110 5 C -0.153 4.153 6 C 0.175 3.825 7 N -0.632 5.632 8 C 0.090 3.910 9 C 0.119 3.881 10 C 0.122 3.878 11 N -0.629 5.629 12 C 0.073 3.927 13 C 0.694 3.306 14 O -0.634 6.634 15 N -0.733 5.733 16 C 0.161 3.839 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.057 0.943 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.170 4.170 27 C -0.169 4.169 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.405 0.595 44 H 0.041 0.959 45 H 0.040 0.960 46 H 0.008 0.992 47 H 0.009 0.991 48 H 0.266 0.734 49 H 0.109 0.891 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.699 -16.472 -3.209 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.251 6.251 3 C 0.006 3.994 4 C -0.129 4.129 5 C -0.175 4.175 6 C 0.074 3.926 7 N -0.345 5.345 8 C -0.052 4.052 9 C -0.007 4.007 10 C -0.002 4.002 11 N -0.366 5.366 12 C -0.069 4.069 13 C 0.395 3.605 14 O -0.516 6.516 15 N -0.390 5.390 16 C 0.037 3.963 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.075 0.925 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.192 4.192 27 C -0.188 4.188 28 H 0.139 0.861 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.175 0.825 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.243 0.757 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.075 0.925 49 H 0.127 0.873 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 22.458 -17.075 -3.210 28.394 hybrid contribution -1.614 0.920 0.083 1.860 sum 20.844 -16.155 -3.127 26.556 Atomic orbital electron populations 1.23187 0.77517 1.05116 1.01360 1.85994 1.22407 1.26810 1.89883 1.19018 0.92995 0.83973 1.03377 1.20454 0.90883 0.98885 1.02670 1.20748 1.00641 0.89353 1.06788 1.17896 0.91042 0.86605 0.97072 1.46406 1.05938 1.01378 1.80817 1.21854 0.77404 1.03802 1.02108 1.21678 0.95828 0.86721 0.96440 1.21780 0.95202 0.85350 0.97902 1.47009 1.02863 1.08746 1.77983 1.22028 0.99207 0.82454 1.03239 1.16186 0.82349 0.84075 0.77876 1.90861 1.71914 1.28672 1.60111 1.45377 1.07173 1.07711 1.78693 1.21050 0.77163 0.98744 0.99382 1.19113 0.95075 0.90701 0.96323 1.21473 0.92464 0.92987 1.51437 0.92460 1.25857 1.03913 0.94929 0.94423 1.70059 1.37416 0.97980 1.51059 0.85402 0.79263 0.78481 0.77939 1.19093 1.20169 1.20146 1.20649 0.93721 0.97525 1.07351 1.21116 1.00094 0.92105 1.05508 0.86111 0.93037 0.92716 0.83519 0.82456 0.92470 0.90412 0.89907 0.93479 0.88432 0.93057 0.87529 0.91129 0.91482 0.87802 0.75723 0.94020 0.94114 0.97322 0.97264 0.92519 0.87297 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -7.94 10.50 -93.59 -0.98 -8.92 16 3 C 0.05 1.30 6.69 22.49 0.15 1.45 16 4 C -0.11 -2.30 9.98 22.35 0.22 -2.07 16 5 C -0.15 -2.91 9.20 22.39 0.21 -2.70 16 6 C 0.17 4.02 6.55 38.14 0.25 4.27 16 7 N -0.63 -11.51 3.02 -722.00 -2.18 -13.69 16 8 C 0.09 0.89 10.23 127.77 1.31 2.19 16 9 C 0.12 2.39 5.52 86.38 0.48 2.86 16 10 C 0.12 2.66 5.78 86.38 0.50 3.16 16 11 N -0.63 -15.49 2.87 -864.90 -2.49 -17.98 16 12 C 0.07 1.13 10.25 127.77 1.31 2.44 16 13 C 0.69 24.63 8.28 179.06 1.48 26.11 16 14 O -0.63 -27.83 15.92 -4.01 -0.06 -27.89 16 15 N -0.73 -26.46 5.42 -478.54 -2.59 -29.06 16 16 C 0.16 7.15 5.61 86.38 0.48 7.64 16 17 C 0.03 1.29 5.09 29.85 0.15 1.44 16 18 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.01 0.43 5.46 84.65 0.46 0.89 16 21 N -0.93 -54.10 13.29 21.45 0.28 -53.82 16 22 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 26 C -0.17 -4.83 9.20 22.39 0.21 -4.63 16 27 C -0.17 -4.61 9.03 22.35 0.20 -4.40 16 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 0.91 7.66 -2.39 -0.02 0.90 16 30 H 0.05 0.92 7.66 -2.39 -0.02 0.90 16 31 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.16 1.94 6.14 -2.91 -0.02 1.92 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.08 0.61 6.20 -2.39 -0.01 0.60 16 35 H 0.08 0.55 7.89 -2.39 -0.02 0.53 16 36 H 0.05 1.28 6.21 -2.39 -0.01 1.27 16 37 H 0.10 1.47 7.89 -2.39 -0.02 1.45 16 38 H 0.05 1.50 7.42 -2.39 -0.02 1.48 16 39 H 0.11 1.60 7.89 -2.39 -0.02 1.58 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.12 6.36 -2.39 -0.02 1.11 16 42 H 0.10 0.97 7.89 -2.39 -0.02 0.96 16 43 H 0.41 12.46 6.20 -92.70 -0.58 11.89 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.27 14.55 8.31 -92.71 -0.77 13.77 16 49 H 0.11 3.62 6.15 -2.91 -0.02 3.60 16 50 H 0.12 3.24 6.29 -2.91 -0.02 3.22 16 Total: -1.00 -74.81 406.64 3.13 -71.68 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.36 Total: 24.16 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 8.76 Total: 9.68 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -6.97 Total: -114.54 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.05 Total: -36.81 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.81 3.13 -71.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845104287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.907 kcal (2) G-P(sol) polarization free energy of solvation -74.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds