Wall clock time and date at job start Tue Mar 31 2020 18:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34644 * 117.00095 * 2 1 4 4 O 1.21507 * 119.99829 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99889 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99985 * 359.97438 * 5 3 2 7 7 C 1.46496 * 119.99418 * 179.97438 * 5 3 2 8 8 C 1.52998 * 109.47171 * 90.00064 * 7 5 3 9 9 N 1.46906 * 109.47020 * 179.97438 * 8 7 5 10 10 C 1.46902 * 110.99573 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46656 * 179.97438 * 10 9 8 12 12 C 1.38280 * 119.92897 * 269.72802 * 11 10 9 13 13 C 1.38103 * 120.07444 * 179.72759 * 12 11 10 14 14 C 1.38906 * 119.92389 * 0.54815 * 13 12 11 15 15 N 1.39674 * 120.07564 * 179.75193 * 14 13 12 16 16 C 1.46496 * 120.00521 * 179.97438 * 15 14 13 17 17 C 1.46506 * 119.99758 * 359.97200 * 15 14 13 18 18 C 1.50695 * 109.47155 * 90.00571 * 17 15 14 19 19 H 1.07999 * 119.99981 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00359 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00490 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46920 * 89.99915 * 22 20 18 24 24 H 1.48497 * 109.47357 * 210.00329 * 22 20 18 25 25 H 1.48500 * 109.46830 * 330.00418 * 22 20 18 26 26 C 1.38905 * 119.85375 * 359.72287 * 14 13 12 27 27 C 1.38108 * 119.92517 * 0.02562 * 26 14 13 28 28 H 1.09000 * 109.47331 * 60.00058 * 1 2 3 29 29 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47228 * 300.00211 * 1 2 3 31 31 H 1.08999 * 109.47105 * 269.99429 * 6 5 3 32 32 H 1.08995 * 109.47455 * 30.00011 * 6 5 3 33 33 H 1.09000 * 109.46963 * 150.00481 * 6 5 3 34 34 H 1.08995 * 109.47879 * 329.99459 * 7 5 3 35 35 H 1.09008 * 109.46699 * 210.00009 * 7 5 3 36 36 H 1.09002 * 109.47142 * 59.99877 * 8 7 5 37 37 H 1.09000 * 109.46991 * 299.99621 * 8 7 5 38 38 H 1.00896 * 111.00309 * 56.04370 * 9 8 7 39 39 H 1.08990 * 109.47358 * 299.99539 * 10 9 8 40 40 H 1.09004 * 109.47457 * 60.00221 * 10 9 8 41 41 H 1.07998 * 119.95898 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.03747 * 180.27137 * 13 12 11 43 43 H 1.08996 * 109.47702 * 89.99190 * 16 15 14 44 44 H 1.08997 * 109.47558 * 209.99831 * 16 15 14 45 45 H 1.09006 * 109.46777 * 329.99813 * 16 15 14 46 46 H 1.09004 * 109.46781 * 210.00196 * 17 15 14 47 47 H 1.08997 * 109.47198 * 329.99952 * 17 15 14 48 48 H 0.96991 * 120.00111 * 179.97438 * 21 20 18 49 49 H 1.08006 * 120.04526 * 179.97438 * 26 14 13 50 50 H 1.08001 * 119.96705 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2070 0.0415 -0.0005 7 6 4.0742 2.5755 -0.0011 8 6 4.3062 3.0303 1.4412 9 7 4.9737 4.3390 1.4406 10 6 5.2126 4.8086 2.8118 11 6 5.8976 6.1504 2.7710 12 6 7.2786 6.2199 2.7586 13 6 7.9094 7.4477 2.7155 14 6 7.1551 8.6139 2.6961 15 7 7.7898 9.8575 2.6578 16 6 6.9928 11.0865 2.6368 17 6 9.2528 9.9329 2.6386 18 6 9.7376 9.9237 1.2118 19 1 9.0271 9.8669 0.4004 20 6 11.0883 9.9866 0.9422 21 7 11.5115 9.9781 -0.3030 22 14 12.3173 10.0841 2.3456 23 1 12.7149 8.7121 2.7515 24 1 13.5180 10.8363 1.9008 25 1 11.6959 10.7813 3.5001 26 6 5.7681 8.5407 2.7143 27 6 5.1436 7.3095 2.7522 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 4.4054 -0.2629 1.0271 32 1 3.6584 -0.7480 -0.5139 33 1 5.1512 0.2214 -0.5147 34 1 3.4461 3.3032 -0.5149 35 1 5.0320 2.4950 -0.5153 36 1 4.9345 2.3026 1.9550 37 1 3.3485 3.1107 1.9553 38 1 4.4418 5.0159 0.9144 39 1 4.2610 4.9019 3.3349 40 1 5.8466 4.0932 3.3357 41 1 7.8645 5.3128 2.7786 42 1 8.9880 7.5011 2.7015 43 1 6.8072 11.4168 3.6588 44 1 7.5356 11.8625 2.0972 45 1 6.0424 10.8947 2.1388 46 1 9.5756 10.8529 3.1261 47 1 9.6678 9.0758 3.1690 48 1 12.4616 10.0227 -0.4926 49 1 5.1786 9.4456 2.6998 50 1 4.0652 7.2518 2.7668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850388780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:28 Heat of formation + Delta-G solvation = -32.953335 kcal Electronic energy + Delta-G solvation = -27886.725621 eV Core-core repulsion = 23914.676018 eV Total energy + Delta-G solvation = -3972.049603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84187 -39.12264 -37.76005 -36.59729 -35.95660 -34.91759 -32.63328 -30.99592 -30.54060 -28.89251 -28.29280 -28.04636 -26.64943 -25.47545 -23.91428 -22.73292 -21.95545 -21.44790 -20.74114 -19.55506 -18.42687 -17.45514 -17.05188 -16.93200 -16.68675 -15.98572 -15.46207 -15.23459 -14.92100 -14.52244 -14.37657 -14.26910 -13.98898 -13.81527 -13.61105 -13.26875 -13.22922 -13.03505 -12.95463 -12.81378 -12.46769 -12.39578 -12.31602 -11.95389 -11.77660 -11.59635 -11.44721 -11.30611 -11.11204 -11.00388 -10.86423 -10.71844 -10.60744 -10.25072 -10.06425 -9.58549 -9.20330 -8.92209 -8.65351 -8.44570 -8.30388 -6.41881 -6.13811 -4.13853 1.77792 2.07124 2.17331 2.46644 3.21970 3.29726 3.30470 3.51953 4.04517 4.22855 4.32695 4.62102 4.70456 4.76686 4.80768 4.84834 4.87578 5.10796 5.11232 5.16405 5.24124 5.27763 5.29793 5.37063 5.50646 5.52672 5.61790 5.70181 5.74641 5.79236 5.88972 5.96528 6.02291 6.04358 6.22594 6.32036 6.37839 6.54464 6.74454 6.75338 6.90424 6.91712 7.02453 7.05844 7.25473 7.37231 7.52229 7.54598 7.91722 8.04633 8.33938 8.51796 8.94039 9.45920 10.99219 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.001867 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.965235 B =14997.724954 C =15770.903999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.645 3.355 4 O -0.569 6.569 5 N -0.596 5.596 6 C 0.083 3.917 7 C 0.131 3.869 8 C 0.043 3.957 9 N -0.681 5.681 10 C 0.118 3.882 11 C -0.171 4.171 12 C -0.049 4.049 13 C -0.189 4.189 14 C 0.242 3.758 15 N -0.611 5.611 16 C 0.098 3.902 17 C 0.220 3.780 18 C -0.535 4.535 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.894 5.894 22 Si 0.872 3.128 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 C -0.218 4.218 27 C -0.067 4.067 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.344 0.656 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.265 0.735 49 H 0.114 0.886 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -18.879 4.145 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.458 6.458 5 N -0.336 5.336 6 C -0.060 4.060 7 C 0.009 3.991 8 C -0.088 4.088 9 N -0.313 5.313 10 C -0.010 4.010 11 C -0.174 4.174 12 C -0.069 4.069 13 C -0.211 4.211 14 C 0.135 3.865 15 N -0.317 5.317 16 C -0.046 4.046 17 C 0.099 3.901 18 C -0.573 4.573 19 H 0.095 0.905 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.699 3.301 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.241 4.241 27 C -0.086 4.086 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.163 0.837 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.132 0.868 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.320 -18.645 3.953 25.753 hybrid contribution -0.190 0.389 0.762 0.876 sum -17.510 -18.256 4.715 25.731 Atomic orbital electron populations 1.23197 0.74435 1.03448 1.02807 1.86238 1.24153 1.31103 1.87034 1.18124 0.83309 0.82160 0.76466 1.91012 1.64259 1.34921 1.55582 1.46616 1.02180 1.08698 1.76132 1.21830 0.96143 0.85658 1.02369 1.21515 0.97903 0.82230 0.97409 1.22289 0.97251 0.92681 0.96561 1.60495 1.52013 1.03788 1.15006 1.20632 0.97854 0.93995 0.88531 1.19175 0.93685 0.93242 1.11263 1.20633 0.93415 0.96631 0.96218 1.20834 1.00401 0.90950 1.08917 1.17925 0.91212 0.86149 0.91201 1.46716 1.06549 1.01873 1.76525 1.21493 0.95767 0.87570 0.99722 1.19660 0.75791 0.96816 0.97813 1.21480 0.92944 1.51321 0.91570 0.90530 1.24901 0.98174 0.94535 0.95421 1.69899 1.15108 1.50057 1.18160 0.86914 0.81413 0.78836 0.82944 1.19888 1.20971 1.19056 1.20521 0.92686 0.97665 1.13207 1.20542 0.98134 0.91808 0.98146 0.91818 0.87958 0.91857 0.92362 0.90471 0.90344 0.89459 0.88467 0.90881 0.95075 0.83736 0.95298 0.90972 0.86903 0.85388 0.94556 0.91257 0.92387 0.95464 0.95477 0.92512 0.86793 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.41 9.39 -40.34 -0.38 -3.79 16 3 C 0.65 7.25 8.40 54.06 0.45 7.70 16 4 O -0.57 -8.14 15.71 -19.28 -0.30 -8.44 16 5 N -0.60 -5.45 2.87 -187.42 -0.54 -5.98 16 6 C 0.08 0.49 10.49 59.85 0.63 1.12 16 7 C 0.13 1.23 5.71 -4.05 -0.02 1.20 16 8 C 0.04 0.43 6.01 -3.82 -0.02 0.41 16 9 N -0.68 -8.04 6.49 -115.05 -0.75 -8.78 16 10 C 0.12 1.46 5.81 -4.97 -0.03 1.43 16 11 C -0.17 -2.59 5.39 -104.58 -0.56 -3.16 16 12 C -0.05 -0.84 9.69 -39.62 -0.38 -1.22 16 13 C -0.19 -3.73 9.21 -39.38 -0.36 -4.10 16 14 C 0.24 4.80 6.55 -83.79 -0.55 4.26 16 15 N -0.61 -12.75 2.99 -181.01 -0.54 -13.29 16 16 C 0.10 1.69 10.19 59.84 0.61 2.30 16 17 C 0.22 5.18 3.98 -5.19 -0.02 5.16 16 18 C -0.53 -14.85 9.94 -34.44 -0.34 -15.19 16 19 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 21 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 22 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 26 C -0.22 -3.73 9.21 -39.38 -0.36 -4.10 16 27 C -0.07 -1.03 9.69 -39.61 -0.38 -1.41 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.42 7.37 -51.93 -0.38 0.03 16 33 H 0.08 0.36 7.89 -51.93 -0.41 -0.05 16 34 H 0.09 0.93 7.42 -51.93 -0.39 0.55 16 35 H 0.10 0.80 7.89 -51.92 -0.41 0.39 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.34 4.12 8.72 -39.29 -0.34 3.78 16 39 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 40 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.13 2.72 6.14 -52.48 -0.32 2.40 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.06 0.90 6.20 -51.93 -0.32 0.57 16 46 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 47 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.11 1.76 6.14 -52.48 -0.32 1.44 16 50 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -33.29 410.17 -8.82 -42.10 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.21 Total: 4.39 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.38 Total: -2.23 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.05 Total: -54.23 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.68 Total: -12.23 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.29 -8.82 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850388780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.150 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds