Wall clock time and date at job start Tue Mar 31 2020 18:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34644 * 117.00095 * 2 1 4 4 O 1.21507 * 119.99829 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99889 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99985 * 359.97438 * 5 3 2 7 7 C 1.46496 * 119.99418 * 179.97438 * 5 3 2 8 8 C 1.52998 * 109.47171 * 90.00064 * 7 5 3 9 9 N 1.46906 * 109.47020 * 179.97438 * 8 7 5 10 10 C 1.46902 * 110.99573 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46656 * 179.97438 * 10 9 8 12 12 C 1.38280 * 119.92897 * 269.72802 * 11 10 9 13 13 C 1.38103 * 120.07444 * 179.72759 * 12 11 10 14 14 C 1.38906 * 119.92389 * 0.54815 * 13 12 11 15 15 N 1.39674 * 120.07564 * 179.75193 * 14 13 12 16 16 C 1.46496 * 120.00521 * 179.97438 * 15 14 13 17 17 C 1.46506 * 119.99758 * 359.97200 * 15 14 13 18 18 C 1.50695 * 109.47155 * 90.00571 * 17 15 14 19 19 H 1.07999 * 119.99981 * 359.97438 * 18 17 15 20 20 C 1.37877 * 120.00359 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00490 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46920 * 89.99915 * 22 20 18 24 24 H 1.48497 * 109.47357 * 210.00329 * 22 20 18 25 25 H 1.48500 * 109.46830 * 330.00418 * 22 20 18 26 26 C 1.38905 * 119.85375 * 359.72287 * 14 13 12 27 27 C 1.38108 * 119.92517 * 0.02562 * 26 14 13 28 28 H 1.09000 * 109.47331 * 60.00058 * 1 2 3 29 29 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47228 * 300.00211 * 1 2 3 31 31 H 1.08999 * 109.47105 * 269.99429 * 6 5 3 32 32 H 1.08995 * 109.47455 * 30.00011 * 6 5 3 33 33 H 1.09000 * 109.46963 * 150.00481 * 6 5 3 34 34 H 1.08995 * 109.47879 * 329.99459 * 7 5 3 35 35 H 1.09008 * 109.46699 * 210.00009 * 7 5 3 36 36 H 1.09002 * 109.47142 * 59.99877 * 8 7 5 37 37 H 1.09000 * 109.46991 * 299.99621 * 8 7 5 38 38 H 1.00896 * 111.00309 * 56.04370 * 9 8 7 39 39 H 1.08990 * 109.47358 * 299.99539 * 10 9 8 40 40 H 1.09004 * 109.47457 * 60.00221 * 10 9 8 41 41 H 1.07998 * 119.95898 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.03747 * 180.27137 * 13 12 11 43 43 H 1.08996 * 109.47702 * 89.99190 * 16 15 14 44 44 H 1.08997 * 109.47558 * 209.99831 * 16 15 14 45 45 H 1.09006 * 109.46777 * 329.99813 * 16 15 14 46 46 H 1.09004 * 109.46781 * 210.00196 * 17 15 14 47 47 H 1.08997 * 109.47198 * 329.99952 * 17 15 14 48 48 H 0.96991 * 120.00111 * 179.97438 * 21 20 18 49 49 H 1.08006 * 120.04526 * 179.97438 * 26 14 13 50 50 H 1.08001 * 119.96705 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2070 0.0415 -0.0005 7 6 4.0742 2.5755 -0.0011 8 6 4.3062 3.0303 1.4412 9 7 4.9737 4.3390 1.4406 10 6 5.2126 4.8086 2.8118 11 6 5.8976 6.1504 2.7710 12 6 7.2786 6.2199 2.7586 13 6 7.9094 7.4477 2.7155 14 6 7.1551 8.6139 2.6961 15 7 7.7898 9.8575 2.6578 16 6 6.9928 11.0865 2.6368 17 6 9.2528 9.9329 2.6386 18 6 9.7376 9.9237 1.2118 19 1 9.0271 9.8669 0.4004 20 6 11.0883 9.9866 0.9422 21 7 11.5115 9.9781 -0.3030 22 14 12.3173 10.0841 2.3456 23 1 12.7149 8.7121 2.7515 24 1 13.5180 10.8363 1.9008 25 1 11.6959 10.7813 3.5001 26 6 5.7681 8.5407 2.7143 27 6 5.1436 7.3095 2.7522 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 4.4054 -0.2629 1.0271 32 1 3.6584 -0.7480 -0.5139 33 1 5.1512 0.2214 -0.5147 34 1 3.4461 3.3032 -0.5149 35 1 5.0320 2.4950 -0.5153 36 1 4.9345 2.3026 1.9550 37 1 3.3485 3.1107 1.9553 38 1 4.4418 5.0159 0.9144 39 1 4.2610 4.9019 3.3349 40 1 5.8466 4.0932 3.3357 41 1 7.8645 5.3128 2.7786 42 1 8.9880 7.5011 2.7015 43 1 6.8072 11.4168 3.6588 44 1 7.5356 11.8625 2.0972 45 1 6.0424 10.8947 2.1388 46 1 9.5756 10.8529 3.1261 47 1 9.6678 9.0758 3.1690 48 1 12.4616 10.0227 -0.4926 49 1 5.1786 9.4456 2.6998 50 1 4.0652 7.2518 2.7668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850388780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:27 Heat of formation + Delta-G solvation = -54.949766 kcal Electronic energy + Delta-G solvation = -27887.679458 eV Core-core repulsion = 23914.676018 eV Total energy + Delta-G solvation = -3973.003440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61562 -40.48353 -38.56513 -37.74649 -36.92952 -36.01646 -34.68100 -32.14918 -31.95296 -30.26947 -29.64949 -28.63458 -27.47569 -26.68322 -25.33534 -23.76104 -23.23588 -22.93508 -21.52975 -20.95921 -19.14641 -19.07008 -18.28216 -18.14652 -17.73517 -17.02667 -16.73863 -16.25129 -16.10100 -15.95232 -15.44805 -15.20577 -15.08635 -14.95186 -14.76876 -14.66169 -14.34324 -14.30192 -14.06297 -13.86133 -13.49590 -13.35553 -13.23539 -13.12147 -13.08689 -12.95276 -12.72259 -12.62033 -12.40670 -12.13500 -12.04420 -11.93313 -11.81838 -11.73817 -11.69954 -11.44459 -10.81433 -10.43767 -9.91123 -9.67187 -9.37936 -8.32352 -7.91394 -6.37753 0.70727 0.80429 1.12288 1.35157 1.35970 1.46570 1.63720 2.31351 2.54379 2.84903 3.01361 3.07988 3.56981 3.92351 4.02660 4.11882 4.14338 4.22159 4.29700 4.33365 4.34566 4.41143 4.46031 4.51144 4.62239 4.66336 4.67010 4.70462 4.72984 4.78464 4.80891 4.82425 4.91185 4.92313 4.97494 5.06258 5.08411 5.20959 5.30266 5.34216 5.46540 5.60101 5.63696 5.91059 6.04201 6.10446 6.18297 6.23295 6.40452 6.60609 6.70692 6.87244 7.13188 7.27635 8.85086 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.001867 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.965235 B =14997.724954 C =15770.903999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.639 3.361 4 O -0.608 6.608 5 N -0.593 5.593 6 C 0.079 3.921 7 C 0.134 3.866 8 C 0.054 3.946 9 N -0.688 5.688 10 C 0.123 3.877 11 C -0.159 4.159 12 C -0.054 4.054 13 C -0.217 4.217 14 C 0.211 3.789 15 N -0.628 5.628 16 C 0.097 3.903 17 C 0.232 3.768 18 C -0.537 4.537 19 H 0.024 0.976 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.244 1.244 26 C -0.217 4.217 27 C -0.064 4.064 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.018 0.982 38 H 0.343 0.657 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.035 0.965 47 H 0.030 0.970 48 H 0.268 0.732 49 H 0.132 0.868 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 -20.578 6.033 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.393 3.607 4 O -0.500 6.500 5 N -0.333 5.333 6 C -0.063 4.063 7 C 0.012 3.988 8 C -0.077 4.077 9 N -0.319 5.319 10 C -0.006 4.006 11 C -0.161 4.161 12 C -0.073 4.073 13 C -0.240 4.240 14 C 0.107 3.893 15 N -0.336 5.336 16 C -0.046 4.046 17 C 0.109 3.891 18 C -0.575 4.575 19 H 0.043 0.957 20 C -0.186 4.186 21 N -0.585 5.585 22 Si 0.769 3.231 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.167 1.167 26 C -0.239 4.239 27 C -0.083 4.083 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.161 0.839 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.077 0.923 49 H 0.149 0.851 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.301 -20.387 5.854 28.015 hybrid contribution -0.060 0.780 0.082 0.786 sum -18.361 -19.607 5.936 27.511 Atomic orbital electron populations 1.23483 0.72992 1.05633 1.02382 1.86249 1.25584 1.29894 1.86666 1.18395 0.83890 0.82204 0.76188 1.90979 1.65285 1.36245 1.57494 1.46747 1.01802 1.09593 1.75128 1.22043 0.96421 0.84434 1.03377 1.21458 0.98122 0.82249 0.96966 1.22209 0.96559 0.91986 0.96896 1.60468 1.52445 1.04439 1.14587 1.20606 0.98313 0.92536 0.89114 1.19497 0.93011 0.94838 1.08790 1.20824 0.94542 0.96065 0.95846 1.20827 0.99394 0.92512 1.11226 1.18219 0.92487 0.85730 0.92857 1.46694 1.05619 1.03370 1.77928 1.21631 0.95688 0.86008 1.01288 1.19340 0.78053 0.96997 0.94719 1.21665 0.92359 1.50838 0.92673 0.95744 1.25876 1.00455 0.93953 0.98361 1.70065 1.15772 1.51812 1.20897 0.85729 0.78269 0.79429 0.79653 1.18950 1.20579 1.16710 1.20776 0.91587 0.99272 1.12284 1.20920 0.99745 0.91047 0.96586 0.92262 0.84443 0.92338 0.91374 0.89888 0.88700 0.91150 0.87004 0.89777 0.96360 0.83920 0.94019 0.89968 0.85519 0.87998 0.92004 0.92576 0.90873 0.94673 0.95212 0.92324 0.85075 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.56 113.37 1.20 1.76 16 2 O -0.37 -6.34 9.39 -55.54 -0.52 -6.87 16 3 C 0.64 13.88 8.40 129.79 1.09 14.97 16 4 O -0.61 -17.45 15.71 19.82 0.31 -17.14 16 5 N -0.59 -9.98 2.87 -977.27 -2.81 -12.79 16 6 C 0.08 0.75 10.49 127.77 1.34 2.09 16 7 C 0.13 2.33 5.71 86.38 0.49 2.82 16 8 C 0.05 0.98 6.01 86.30 0.52 1.50 16 9 N -0.69 -14.79 6.49 -517.91 -3.36 -18.15 16 10 C 0.12 2.70 5.81 85.56 0.50 3.19 16 11 C -0.16 -4.48 5.39 -19.84 -0.11 -4.59 16 12 C -0.05 -1.77 9.69 22.25 0.22 -1.56 16 13 C -0.22 -8.74 9.21 22.40 0.21 -8.54 16 14 C 0.21 8.43 6.55 38.21 0.25 8.68 16 15 N -0.63 -26.45 2.99 -726.58 -2.17 -28.62 16 16 C 0.10 3.26 10.19 127.77 1.30 4.56 16 17 C 0.23 11.02 3.98 85.63 0.34 11.37 16 18 C -0.54 -31.05 9.94 25.60 0.25 -30.79 16 19 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 20 C 0.01 0.67 5.47 84.65 0.46 1.13 16 21 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 22 Si 0.95 43.02 27.47 68.60 1.88 44.90 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 26 C -0.22 -7.10 9.21 22.40 0.21 -6.89 16 27 C -0.06 -1.80 9.69 22.25 0.22 -1.58 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.72 7.37 -2.39 -0.02 0.70 16 33 H 0.09 0.61 7.89 -2.39 -0.02 0.59 16 34 H 0.07 1.48 7.42 -2.39 -0.02 1.46 16 35 H 0.11 1.61 7.89 -2.38 -0.02 1.60 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.34 7.62 8.72 -89.70 -0.78 6.83 16 39 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 40 H 0.08 1.68 8.08 -2.38 -0.02 1.66 16 41 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.10 4.54 6.14 -2.91 -0.02 4.52 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 45 H 0.07 2.19 6.20 -2.38 -0.01 2.17 16 46 H 0.04 1.61 7.13 -2.38 -0.02 1.59 16 47 H 0.03 1.41 5.62 -2.39 -0.01 1.39 16 48 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 49 H 0.13 3.76 6.14 -2.91 -0.02 3.75 16 50 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -75.61 410.17 2.21 -73.40 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.09 Total: 25.94 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 8.48 Total: -1.87 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -8.04 Total: -118.37 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.21 Total: -24.00 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -75.61 2.21 -73.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850388780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.450 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds