Wall clock time and date at job start Tue Mar 31 2020 18:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53004 * 109.47302 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47194 * 64.99973 * 4 3 2 6 6 C 1.42900 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47168 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47055 * 64.99583 * 7 6 5 9 9 C 1.46497 * 120.00395 * 270.00411 * 8 7 6 10 10 C 1.34781 * 119.99433 * 89.99730 * 8 7 6 11 11 O 1.21585 * 120.00376 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99424 * 180.02562 * 10 8 7 13 13 C 1.39949 * 119.99925 * 184.59267 * 12 10 8 14 14 C 1.38868 * 120.06872 * 324.91110 * 13 12 10 15 15 C 1.38114 * 119.93047 * 180.02562 * 14 13 12 16 16 C 1.38274 * 120.06874 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.92959 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47324 * 90.00026 * 17 16 15 19 19 H 1.08005 * 119.99492 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00214 * 180.27586 * 18 17 16 21 21 N 1.31519 * 119.99981 * 359.72271 * 20 18 17 22 22 Si 1.86802 * 120.00324 * 179.72707 * 20 18 17 23 23 H 1.48493 * 109.47348 * 89.99712 * 22 20 18 24 24 H 1.48498 * 109.47069 * 209.99995 * 22 20 18 25 25 H 1.48505 * 109.46829 * 329.99929 * 22 20 18 26 26 C 1.38279 * 120.14432 * 0.23332 * 16 15 14 27 27 C 1.38116 * 120.06410 * 359.48832 * 26 16 15 28 28 H 1.08998 * 109.47562 * 300.00406 * 1 2 3 29 29 H 1.09001 * 109.46604 * 60.00295 * 1 2 3 30 30 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.00897 * 111.00144 * 123.95384 * 2 1 3 32 32 H 1.09000 * 109.47686 * 59.99789 * 3 2 1 33 33 H 1.08996 * 109.47686 * 299.99650 * 3 2 1 34 34 H 1.09008 * 109.46999 * 305.00280 * 4 3 2 35 35 H 1.09003 * 109.47815 * 185.00139 * 4 3 2 36 36 H 1.09005 * 109.47398 * 59.99984 * 6 5 4 37 37 H 1.09004 * 109.46916 * 300.00179 * 6 5 4 38 38 H 1.08997 * 109.46912 * 305.00308 * 7 6 5 39 39 H 1.08999 * 109.47388 * 184.99731 * 7 6 5 40 40 H 1.08997 * 109.46566 * 269.99904 * 9 8 7 41 41 H 1.09000 * 109.46732 * 29.99276 * 9 8 7 42 42 H 1.08997 * 109.47501 * 150.00002 * 9 8 7 43 43 H 0.96996 * 120.00423 * 4.59312 * 12 10 8 44 44 H 1.07999 * 120.03279 * 0.02562 * 14 13 12 45 45 H 1.08001 * 119.96516 * 179.97438 * 15 14 13 46 46 H 1.08994 * 109.47052 * 330.00070 * 17 16 15 47 47 H 1.09004 * 109.47198 * 210.00223 * 17 16 15 48 48 H 0.96995 * 120.00156 * 180.02562 * 21 20 18 49 49 H 1.08000 * 119.97015 * 179.71857 * 26 16 15 50 50 H 1.07999 * 120.03357 * 180.25219 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3307 0.0006 5 8 3.9864 0.7486 -1.2201 6 6 5.4092 0.6625 -1.3215 7 6 5.7875 0.0267 -2.6608 8 7 5.3736 0.9092 -3.7545 9 6 4.0397 0.7694 -4.3438 10 6 6.2201 1.8498 -4.2184 11 8 7.3274 1.9657 -3.7296 12 7 5.8392 2.6620 -5.2243 13 6 6.7498 3.5735 -5.7707 14 6 7.6927 4.1876 -4.9570 15 6 8.5897 5.0871 -5.4992 16 6 8.5490 5.3768 -6.8507 17 6 9.5288 6.3593 -7.4389 18 6 10.7659 5.6262 -7.8897 19 1 10.8354 4.5558 -7.7633 20 6 11.8109 6.3225 -8.4587 21 7 11.7260 7.6259 -8.6131 22 14 13.3475 5.4149 -9.0106 23 1 13.1892 4.9875 -10.4239 24 1 14.5228 6.3151 -8.8944 25 1 13.5520 4.2204 -8.1522 26 6 7.6078 4.7711 -7.6627 27 6 6.7118 3.8664 -7.1276 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8306 -0.5261 0.7813 32 1 1.6459 1.8948 0.8899 33 1 1.6460 1.8948 -0.8899 34 1 3.8720 0.7318 0.8427 35 1 3.9154 2.3444 0.0902 36 1 5.7951 0.0496 -0.5069 37 1 5.8390 1.6623 -1.2591 38 1 5.2856 -0.9356 -2.7607 39 1 6.8668 -0.1204 -2.7012 40 1 4.0811 0.0629 -5.1728 41 1 3.3453 0.4024 -3.5880 42 1 3.7004 1.7387 -4.7091 43 1 4.9340 2.6148 -5.5695 44 1 7.7247 3.9620 -3.9014 45 1 9.3230 5.5653 -4.8668 46 1 9.7991 7.0985 -6.6849 47 1 9.0724 6.8609 -8.2923 48 1 12.4610 8.1157 -9.0138 49 1 7.5756 5.0029 -8.7170 50 1 5.9796 3.3906 -7.7630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926201562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:36 Heat of formation + Delta-G solvation = -39.804324 kcal Electronic energy + Delta-G solvation = -28199.892120 eV Core-core repulsion = 24227.545436 eV Total energy + Delta-G solvation = -3972.346685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60555 -38.74140 -38.16161 -36.39341 -35.41284 -34.84072 -32.96149 -31.17429 -30.23426 -30.13758 -29.10522 -26.92877 -26.17530 -24.97039 -23.73112 -22.65014 -22.41509 -22.21602 -20.46533 -19.66358 -18.38660 -17.25880 -17.06915 -16.56274 -16.25336 -16.15194 -15.77870 -15.38089 -14.94198 -14.78035 -14.59773 -14.31502 -14.13849 -13.99826 -13.62516 -13.29467 -13.06211 -12.96957 -12.76929 -12.64650 -12.48942 -12.37289 -12.17762 -12.00170 -11.89757 -11.79281 -11.38384 -11.23671 -11.17581 -10.72607 -10.56871 -10.31561 -10.13863 -9.87211 -9.65182 -9.41955 -9.20109 -8.93605 -8.78844 -8.36383 -8.19475 -7.27675 -5.98024 -4.01538 2.02988 2.15947 2.57965 3.20557 3.35191 3.37926 3.41102 3.46944 3.73748 3.86533 4.44884 4.56001 4.64343 4.67468 4.83060 4.85539 4.91567 4.94886 4.99017 5.06472 5.10652 5.12511 5.29449 5.36017 5.39302 5.42136 5.42566 5.51673 5.58957 5.63912 5.69157 6.01433 6.13070 6.17045 6.28980 6.36997 6.42487 6.64591 6.76143 6.81972 6.95867 7.04458 7.10322 7.25015 7.30002 7.57951 7.81290 7.89280 7.94296 7.98276 8.39560 8.58845 9.04106 9.62101 11.11483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.001843 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.275584 B =15185.370473 C =15376.380583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.686 5.686 3 C 0.060 3.940 4 C 0.065 3.935 5 O -0.370 6.370 6 C 0.043 3.957 7 C 0.140 3.860 8 N -0.626 5.626 9 C 0.082 3.918 10 C 0.702 3.298 11 O -0.573 6.573 12 N -0.681 5.681 13 C 0.121 3.879 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.045 4.045 17 C 0.048 3.952 18 C -0.510 4.510 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.109 4.109 27 C -0.145 4.145 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.340 0.660 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.400 0.600 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.261 0.739 49 H 0.121 0.879 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.689 -15.770 16.919 33.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.317 5.317 3 C -0.070 4.070 4 C -0.012 4.012 5 O -0.289 6.289 6 C -0.035 4.035 7 C 0.016 3.984 8 N -0.364 5.364 9 C -0.061 4.061 10 C 0.404 3.596 11 O -0.450 6.450 12 N -0.329 5.329 13 C 0.028 3.972 14 C -0.136 4.136 15 C -0.128 4.128 16 C -0.046 4.046 17 C 0.012 3.988 18 C -0.548 4.548 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.127 4.127 27 C -0.166 4.166 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.157 0.843 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.237 0.763 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.139 0.861 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.888 -15.721 16.399 32.248 hybrid contribution 0.312 -0.129 0.627 0.712 sum -22.576 -15.850 17.026 32.415 Atomic orbital electron populations 1.22202 0.87715 1.01980 1.00354 1.60325 1.07591 1.13790 1.49986 1.22018 0.93377 0.90248 1.01324 1.22465 0.94047 0.97245 0.87484 1.87952 1.20709 1.82608 1.37588 1.23032 0.81831 1.00750 0.97918 1.21357 1.01586 0.92177 0.83249 1.46918 1.15351 1.36115 1.37975 1.21748 0.83905 1.01351 0.99111 1.15910 0.84029 0.79298 0.80348 1.90933 1.20331 1.72713 1.61009 1.42606 1.14714 1.38211 1.37416 1.17329 0.94474 0.93563 0.91859 1.21146 0.96286 0.96176 1.00035 1.21006 0.98348 0.98027 0.95410 1.20696 0.94310 0.96641 0.92925 1.18342 0.91861 0.92540 0.96105 1.21098 0.99966 0.94133 1.39586 0.92442 1.25003 0.98578 0.94861 0.95902 1.69960 1.32507 1.06449 1.44555 0.86548 0.82537 0.79667 0.79046 1.20634 1.21203 1.19785 1.20849 0.95126 0.97028 0.99728 1.20717 1.01763 1.01764 0.92343 0.96234 0.91597 0.91350 0.84311 0.93915 0.90014 0.93604 0.92955 0.92588 0.92812 0.89619 0.88209 0.92974 0.89403 0.92092 0.76321 0.85336 0.86214 0.95339 0.95368 0.92930 0.86092 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.70 60.06 0.64 0.78 16 2 N -0.69 -4.30 6.80 -121.13 -0.82 -5.13 16 3 C 0.06 0.37 6.07 -3.82 -0.02 0.34 16 4 C 0.06 0.45 6.22 37.16 0.23 0.68 16 5 O -0.37 -3.28 9.11 -35.23 -0.32 -3.60 16 6 C 0.04 0.38 6.28 37.16 0.23 0.61 16 7 C 0.14 1.32 5.81 -4.04 -0.02 1.30 16 8 N -0.63 -6.84 2.84 -187.35 -0.53 -7.37 16 9 C 0.08 0.64 10.06 59.85 0.60 1.24 16 10 C 0.70 10.40 8.12 -86.91 -0.71 9.69 16 11 O -0.57 -10.67 13.36 5.29 0.07 -10.60 16 12 N -0.68 -9.51 5.22 -14.22 -0.07 -9.58 16 13 C 0.12 2.11 6.30 -83.69 -0.53 1.58 16 14 C -0.12 -2.27 8.70 -39.39 -0.34 -2.61 16 15 C -0.11 -2.32 9.69 -39.61 -0.38 -2.70 16 16 C -0.05 -1.02 5.07 -104.59 -0.53 -1.55 16 17 C 0.05 1.28 5.10 -29.03 -0.15 1.13 16 18 C -0.51 -14.70 9.09 -34.44 -0.31 -15.01 16 19 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 22 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.11 -2.16 9.69 -39.61 -0.38 -2.55 16 27 C -0.15 -2.48 9.97 -39.40 -0.39 -2.87 16 28 H 0.02 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.34 1.75 8.81 -39.29 -0.35 1.40 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.10 1.05 7.42 -51.93 -0.39 0.66 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.67 7.11 -51.93 -0.37 0.30 16 42 H 0.06 0.42 6.30 -51.93 -0.33 0.09 16 43 H 0.40 4.21 6.52 -40.82 -0.27 3.95 16 44 H 0.13 2.52 6.22 -52.49 -0.33 2.19 16 45 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 46 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 47 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 50 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 412.07 15.07 6.21 6.21 Total: -1.00 -34.38 412.07 -10.23 -44.61 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.32 Total: 2.88 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.16 Total: -8.37 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.69 Total: -48.22 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.25 Total: -14.20 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.38 -10.23 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926201562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.809 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds