Wall clock time and date at job start Tue Mar 31 2020 18:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53004 * 109.47302 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47194 * 64.99973 * 4 3 2 6 6 C 1.42900 * 114.00030 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47168 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47055 * 64.99583 * 7 6 5 9 9 C 1.46497 * 120.00395 * 270.00411 * 8 7 6 10 10 C 1.34781 * 119.99433 * 89.99730 * 8 7 6 11 11 O 1.21585 * 120.00376 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99424 * 180.02562 * 10 8 7 13 13 C 1.39949 * 119.99925 * 184.59267 * 12 10 8 14 14 C 1.38868 * 120.06872 * 324.91110 * 13 12 10 15 15 C 1.38114 * 119.93047 * 180.02562 * 14 13 12 16 16 C 1.38274 * 120.06874 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.92959 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47324 * 90.00026 * 17 16 15 19 19 H 1.08005 * 119.99492 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00214 * 180.27586 * 18 17 16 21 21 N 1.31519 * 119.99981 * 359.72271 * 20 18 17 22 22 Si 1.86802 * 120.00324 * 179.72707 * 20 18 17 23 23 H 1.48493 * 109.47348 * 89.99712 * 22 20 18 24 24 H 1.48498 * 109.47069 * 209.99995 * 22 20 18 25 25 H 1.48505 * 109.46829 * 329.99929 * 22 20 18 26 26 C 1.38279 * 120.14432 * 0.23332 * 16 15 14 27 27 C 1.38116 * 120.06410 * 359.48832 * 26 16 15 28 28 H 1.08998 * 109.47562 * 300.00406 * 1 2 3 29 29 H 1.09001 * 109.46604 * 60.00295 * 1 2 3 30 30 H 1.09002 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.00897 * 111.00144 * 123.95384 * 2 1 3 32 32 H 1.09000 * 109.47686 * 59.99789 * 3 2 1 33 33 H 1.08996 * 109.47686 * 299.99650 * 3 2 1 34 34 H 1.09008 * 109.46999 * 305.00280 * 4 3 2 35 35 H 1.09003 * 109.47815 * 185.00139 * 4 3 2 36 36 H 1.09005 * 109.47398 * 59.99984 * 6 5 4 37 37 H 1.09004 * 109.46916 * 300.00179 * 6 5 4 38 38 H 1.08997 * 109.46912 * 305.00308 * 7 6 5 39 39 H 1.08999 * 109.47388 * 184.99731 * 7 6 5 40 40 H 1.08997 * 109.46566 * 269.99904 * 9 8 7 41 41 H 1.09000 * 109.46732 * 29.99276 * 9 8 7 42 42 H 1.08997 * 109.47501 * 150.00002 * 9 8 7 43 43 H 0.96996 * 120.00423 * 4.59312 * 12 10 8 44 44 H 1.07999 * 120.03279 * 0.02562 * 14 13 12 45 45 H 1.08001 * 119.96516 * 179.97438 * 15 14 13 46 46 H 1.08994 * 109.47052 * 330.00070 * 17 16 15 47 47 H 1.09004 * 109.47198 * 210.00223 * 17 16 15 48 48 H 0.96995 * 120.00156 * 180.02562 * 21 20 18 49 49 H 1.08000 * 119.97015 * 179.71857 * 26 16 15 50 50 H 1.07999 * 120.03357 * 180.25219 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3307 0.0006 5 8 3.9864 0.7486 -1.2201 6 6 5.4092 0.6625 -1.3215 7 6 5.7875 0.0267 -2.6608 8 7 5.3736 0.9092 -3.7545 9 6 4.0397 0.7694 -4.3438 10 6 6.2201 1.8498 -4.2184 11 8 7.3274 1.9657 -3.7296 12 7 5.8392 2.6620 -5.2243 13 6 6.7498 3.5735 -5.7707 14 6 7.6927 4.1876 -4.9570 15 6 8.5897 5.0871 -5.4992 16 6 8.5490 5.3768 -6.8507 17 6 9.5288 6.3593 -7.4389 18 6 10.7659 5.6262 -7.8897 19 1 10.8354 4.5558 -7.7633 20 6 11.8109 6.3225 -8.4587 21 7 11.7260 7.6259 -8.6131 22 14 13.3475 5.4149 -9.0106 23 1 13.1892 4.9875 -10.4239 24 1 14.5228 6.3151 -8.8944 25 1 13.5520 4.2204 -8.1522 26 6 7.6078 4.7711 -7.6627 27 6 6.7118 3.8664 -7.1276 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8306 -0.5261 0.7813 32 1 1.6459 1.8948 0.8899 33 1 1.6460 1.8948 -0.8899 34 1 3.8720 0.7318 0.8427 35 1 3.9154 2.3444 0.0902 36 1 5.7951 0.0496 -0.5069 37 1 5.8390 1.6623 -1.2591 38 1 5.2856 -0.9356 -2.7607 39 1 6.8668 -0.1204 -2.7012 40 1 4.0811 0.0629 -5.1728 41 1 3.3453 0.4024 -3.5880 42 1 3.7004 1.7387 -4.7091 43 1 4.9340 2.6148 -5.5695 44 1 7.7247 3.9620 -3.9014 45 1 9.3230 5.5653 -4.8668 46 1 9.7991 7.0985 -6.6849 47 1 9.0724 6.8609 -8.2923 48 1 12.4610 8.1157 -9.0138 49 1 7.5756 5.0029 -8.7170 50 1 5.9796 3.3906 -7.7630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926201562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:35 Heat of formation + Delta-G solvation = -62.789764 kcal Electronic energy + Delta-G solvation = -28200.888844 eV Core-core repulsion = 24227.545436 eV Total energy + Delta-G solvation = -3973.343408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77628 -39.93620 -39.06476 -37.08472 -36.27317 -36.23529 -34.95391 -32.42091 -31.73910 -31.34468 -29.79123 -28.42992 -27.27691 -25.46359 -25.23076 -23.99388 -23.66771 -22.91317 -21.97361 -20.88845 -19.41965 -18.51008 -18.33234 -17.78125 -17.37985 -17.00581 -16.74301 -16.51484 -16.17640 -15.93614 -15.81007 -15.38481 -15.24088 -14.73814 -14.56670 -14.51646 -14.47010 -14.24333 -13.98844 -13.64914 -13.59285 -13.33644 -13.28538 -13.07744 -12.91696 -12.79889 -12.61578 -12.57429 -12.44957 -12.33530 -12.02494 -11.82853 -11.69407 -11.53168 -11.13752 -10.87946 -10.58941 -10.52081 -9.73552 -9.71312 -9.35287 -8.80851 -8.17452 -6.32047 0.50817 0.60370 1.39241 1.40588 1.52286 1.55441 2.04889 2.40791 2.73558 2.89405 3.03953 3.11219 3.31849 4.02453 4.05297 4.13546 4.18029 4.19755 4.22828 4.31488 4.41476 4.43564 4.47784 4.52947 4.56344 4.62079 4.67090 4.68683 4.72181 4.74321 4.78945 4.89404 4.92772 5.02116 5.06770 5.15877 5.29861 5.34618 5.43440 5.52762 5.55326 5.64904 5.77261 5.89243 6.00212 6.10994 6.15375 6.28681 6.29085 6.48629 6.80322 6.85191 7.36205 7.46720 8.89984 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.001843 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.275584 B =15185.370473 C =15376.380583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.699 5.699 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.378 6.378 6 C 0.050 3.950 7 C 0.136 3.864 8 N -0.617 5.617 9 C 0.079 3.921 10 C 0.695 3.305 11 O -0.617 6.617 12 N -0.669 5.669 13 C 0.136 3.864 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.077 4.077 17 C 0.058 3.942 18 C -0.530 4.530 19 H 0.050 0.950 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.112 4.112 27 C -0.129 4.129 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.345 0.655 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.420 0.580 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.001 0.999 47 H 0.010 0.990 48 H 0.266 0.734 49 H 0.128 0.872 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.656 -18.383 16.824 35.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.330 5.330 3 C -0.065 4.065 4 C -0.015 4.015 5 O -0.297 6.297 6 C -0.028 4.028 7 C 0.013 3.987 8 N -0.353 5.353 9 C -0.063 4.063 10 C 0.398 3.602 11 O -0.497 6.497 12 N -0.319 5.319 13 C 0.041 3.959 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.077 4.077 17 C 0.021 3.979 18 C -0.568 4.568 19 H 0.069 0.931 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.130 4.130 27 C -0.149 4.149 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.261 0.739 44 H 0.143 0.857 45 H 0.127 0.873 46 H 0.019 0.981 47 H 0.028 0.972 48 H 0.074 0.926 49 H 0.146 0.854 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.933 -18.368 16.314 35.003 hybrid contribution 0.779 0.614 0.758 1.248 sum -24.155 -17.754 17.071 34.498 Atomic orbital electron populations 1.22205 0.87041 1.02459 1.00427 1.60323 1.08351 1.13827 1.50529 1.21958 0.92695 0.90434 1.01434 1.22585 0.94606 0.97180 0.87179 1.87924 1.20332 1.82774 1.38687 1.22898 0.82057 0.99594 0.98273 1.21498 1.01167 0.92953 0.83065 1.47011 1.15842 1.34746 1.37711 1.21955 0.82034 1.02567 0.99721 1.16132 0.83999 0.79878 0.80239 1.90912 1.22485 1.73956 1.62324 1.42422 1.15075 1.37238 1.37188 1.17393 0.93783 0.92759 0.91945 1.21123 0.96825 0.96203 1.00182 1.20922 0.99082 0.98991 0.94964 1.20408 0.95556 0.97941 0.93838 1.18082 0.92377 0.92763 0.94653 1.21393 1.01366 0.94002 1.40003 0.93120 1.25892 1.01870 0.95691 0.95771 1.70074 1.33697 1.07940 1.45142 0.85465 0.78407 0.78365 0.78935 1.19343 1.20324 1.19551 1.20958 0.94971 0.97274 0.99838 1.21003 1.01290 1.00164 0.92431 0.95597 0.92052 0.90694 0.83659 0.92657 0.91007 0.92419 0.93326 0.90802 0.95342 0.87098 0.89637 0.91215 0.88848 0.90961 0.73942 0.85731 0.87334 0.98075 0.97211 0.92557 0.85435 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.70 127.69 1.37 1.60 16 2 N -0.70 -7.44 6.80 -537.16 -3.65 -11.10 16 3 C 0.06 0.68 6.07 86.31 0.52 1.21 16 4 C 0.06 0.76 6.22 71.98 0.45 1.21 16 5 O -0.38 -6.03 9.11 -148.98 -1.36 -7.39 16 6 C 0.05 0.83 6.28 71.98 0.45 1.28 16 7 C 0.14 2.34 5.81 86.38 0.50 2.84 16 8 N -0.62 -12.14 2.84 -864.92 -2.45 -14.59 16 9 C 0.08 0.96 10.06 127.77 1.29 2.25 16 10 C 0.70 19.54 8.12 179.05 1.45 20.99 16 11 O -0.62 -22.90 13.36 -3.98 -0.05 -22.95 16 12 N -0.67 -16.96 5.22 -317.17 -1.65 -18.61 16 13 C 0.14 4.49 6.30 38.15 0.24 4.73 16 14 C -0.12 -4.83 8.70 22.39 0.19 -4.64 16 15 C -0.12 -5.35 9.69 22.25 0.22 -5.13 16 16 C -0.08 -3.59 5.07 -19.84 -0.10 -3.69 16 17 C 0.06 3.24 5.10 29.10 0.15 3.39 16 18 C -0.53 -31.54 9.09 25.60 0.23 -31.31 16 19 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -57.10 13.29 21.44 0.28 -56.81 16 22 Si 0.96 45.82 29.54 68.60 2.03 47.84 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.11 -4.38 9.69 22.25 0.22 -4.17 16 27 C -0.13 -4.05 9.97 22.39 0.22 -3.83 16 28 H 0.03 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.35 2.88 8.81 -89.70 -0.79 2.09 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 1.36 8.07 -2.39 -0.02 1.34 16 39 H 0.09 1.74 7.42 -2.39 -0.02 1.73 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.09 1.11 7.11 -2.39 -0.02 1.09 16 42 H 0.07 0.72 6.30 -2.39 -0.02 0.71 16 43 H 0.42 7.23 6.52 -92.71 -0.60 6.63 16 44 H 0.12 5.00 6.22 -2.91 -0.02 4.98 16 45 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 46 H 0.00 0.06 8.08 -2.39 -0.02 0.04 16 47 H 0.01 0.55 8.08 -2.38 -0.02 0.54 16 48 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 50 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -76.53 412.07 0.54 -75.99 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.46 Total: 20.09 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 7.86 Total: -12.46 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -7.48 Total: -101.11 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.41 Total: -30.35 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.53 0.54 -75.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926201562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.199 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds