Wall clock time and date at job start Tue Mar 31 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99872 * 2 1 4 4 C 1.46905 * 110.99825 * 123.95450 * 2 1 3 5 5 C 1.52994 * 109.47195 * 75.54344 * 4 2 1 6 6 O 1.42898 * 109.47254 * 65.38339 * 5 4 2 7 7 C 1.42901 * 113.99942 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46780 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46979 * 65.00257 * 8 7 6 10 10 C 1.34776 * 119.99609 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99645 * 179.97438 * 10 9 8 13 13 C 1.39952 * 119.99924 * 185.15929 * 12 10 9 14 14 C 1.38864 * 120.07009 * 33.09592 * 13 12 10 15 15 C 1.38113 * 119.93012 * 180.02562 * 14 13 12 16 16 C 1.38276 * 120.07114 * 0.02634 * 15 14 13 17 17 C 1.50693 * 119.93353 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47583 * 89.99614 * 17 16 15 19 19 H 1.08003 * 119.99912 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00498 * 180.27721 * 18 17 16 21 21 N 1.31519 * 119.99844 * 359.72605 * 20 18 17 22 22 Si 1.86807 * 120.00202 * 179.72365 * 20 18 17 23 23 H 1.48503 * 109.47070 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46810 * 120.00031 * 22 20 18 25 25 H 1.48492 * 109.47087 * 239.99953 * 22 20 18 26 26 C 1.38283 * 120.13847 * 0.22790 * 16 15 14 27 27 C 1.38117 * 120.07105 * 359.49441 * 26 16 15 28 28 H 1.09001 * 109.46943 * 296.05099 * 1 2 3 29 29 H 1.09006 * 109.46752 * 56.04381 * 1 2 3 30 30 H 1.09001 * 109.46979 * 176.04751 * 1 2 3 31 31 H 1.08993 * 109.46638 * 181.21244 * 3 2 1 32 32 H 1.09000 * 109.46854 * 301.20882 * 3 2 1 33 33 H 1.08994 * 109.47133 * 61.21262 * 3 2 1 34 34 H 1.08998 * 109.46863 * 315.54256 * 4 2 1 35 35 H 1.08997 * 109.46575 * 195.54172 * 4 2 1 36 36 H 1.09001 * 109.46968 * 305.38438 * 5 4 2 37 37 H 1.09002 * 109.47117 * 185.38581 * 5 4 2 38 38 H 1.09007 * 109.47113 * 60.00315 * 7 6 5 39 39 H 1.08992 * 109.47417 * 300.00021 * 7 6 5 40 40 H 1.08993 * 109.47212 * 304.99814 * 8 7 6 41 41 H 1.09010 * 109.46687 * 185.00132 * 8 7 6 42 42 H 0.96999 * 120.00218 * 359.97438 * 9 8 7 43 43 H 0.97004 * 120.00166 * 5.15928 * 12 10 9 44 44 H 1.08007 * 120.03571 * 0.02562 * 14 13 12 45 45 H 1.08000 * 119.96252 * 179.97438 * 15 14 13 46 46 H 1.09005 * 109.47110 * 329.99537 * 17 16 15 47 47 H 1.09003 * 109.47438 * 210.00104 * 17 16 15 48 48 H 0.96998 * 119.99636 * 180.02562 * 21 20 18 49 49 H 1.07997 * 119.96466 * 179.72525 * 26 16 15 50 50 H 1.07999 * 120.03716 * 180.24964 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8420 -2.2626 0.8595 6 8 2.6683 -2.6286 -0.2475 7 6 2.5991 -4.0138 -0.5915 8 6 3.5181 -4.2898 -1.7833 9 7 4.9102 -4.0571 -1.3906 10 6 5.9020 -4.2394 -2.2848 11 8 5.6414 -4.5966 -3.4175 12 7 7.1826 -4.0249 -1.9236 13 6 8.2024 -4.1088 -2.8785 14 6 7.9581 -3.7314 -4.1923 15 6 8.9664 -3.8159 -5.1324 16 6 10.2179 -4.2763 -4.7666 17 6 11.3156 -4.3678 -5.7950 18 6 12.0804 -3.0698 -5.8303 19 1 11.7999 -2.2597 -5.1735 20 6 13.1349 -2.9145 -6.7049 21 7 13.4768 -3.9012 -7.5045 22 14 14.0780 -1.3027 -6.7541 23 1 13.4999 -0.3605 -5.7625 24 1 15.5042 -1.5536 -6.4249 25 1 13.9800 -0.7133 -8.1135 26 6 10.4628 -4.6579 -3.4602 27 6 9.4604 -4.5704 -2.5142 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5741 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0848 1.3424 -0.0217 32 1 1.6285 1.9015 -0.8790 33 1 1.6637 1.8880 0.9006 34 1 1.4408 -0.5052 2.0390 35 1 3.0500 -0.5289 1.2784 36 1 0.8009 -2.4836 0.6243 37 1 2.1435 -2.8288 1.7408 38 1 1.5736 -4.2715 -0.8566 39 1 2.9166 -4.6159 0.2597 40 1 3.2564 -3.6241 -2.6057 41 1 3.3987 -5.3254 -2.1020 42 1 5.1181 -3.7718 -0.4871 43 1 7.3976 -3.8123 -1.0019 44 1 6.9807 -3.3720 -4.4788 45 1 8.7769 -3.5228 -6.1545 46 1 10.8798 -4.5596 -6.7755 47 1 11.9923 -5.1812 -5.5328 48 1 14.2190 -3.7920 -8.1194 49 1 11.4401 -5.0213 -3.1786 50 1 9.6534 -4.8648 -1.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932568665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:26 Heat of formation + Delta-G solvation = -44.689335 kcal Electronic energy + Delta-G solvation = -27568.061904 eV Core-core repulsion = 23595.503389 eV Total energy + Delta-G solvation = -3972.558514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39665 -38.95762 -38.24867 -37.27552 -35.04476 -34.55586 -32.94315 -31.09722 -30.26880 -30.14850 -28.80357 -28.02994 -26.39671 -24.47845 -23.58156 -22.62168 -22.23592 -21.52390 -21.04949 -20.06264 -18.42943 -17.45220 -17.17817 -16.77507 -16.24318 -15.86478 -15.60747 -15.49322 -15.26164 -14.89690 -14.67051 -14.54856 -14.13848 -14.03989 -13.66651 -13.39200 -12.97572 -12.85758 -12.73853 -12.68062 -12.56664 -12.41952 -12.16505 -11.95699 -11.91410 -11.76127 -11.32711 -11.25415 -11.20868 -10.76929 -10.54845 -10.32765 -10.10270 -9.99447 -9.80808 -9.39041 -9.22616 -9.11071 -8.77902 -8.36705 -8.17846 -7.24141 -5.97703 -4.01359 2.05254 2.17717 2.67003 3.18613 3.31089 3.33490 3.40969 3.46382 3.47395 4.19344 4.42383 4.45252 4.57529 4.65174 4.66898 4.74351 4.76698 4.88908 4.91539 4.95002 4.98065 5.12557 5.18422 5.33344 5.36225 5.40450 5.45595 5.51641 5.51930 5.61242 5.68827 6.04480 6.15522 6.19791 6.30373 6.33887 6.51652 6.54976 6.66909 6.77040 6.82956 7.05308 7.16440 7.27007 7.31658 7.59921 7.82719 7.95629 7.98549 7.99472 8.39912 8.62113 9.04417 9.62079 11.11830 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.001794 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.520112 B =15600.391093 C =16755.402195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.025 3.975 4 C 0.054 3.946 5 C 0.068 3.932 6 O -0.368 6.368 7 C 0.049 3.951 8 C 0.144 3.856 9 N -0.741 5.741 10 C 0.701 3.299 11 O -0.574 6.574 12 N -0.682 5.682 13 C 0.125 3.875 14 C -0.117 4.117 15 C -0.107 4.107 16 C -0.046 4.046 17 C 0.047 3.953 18 C -0.508 4.508 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.108 4.108 27 C -0.147 4.147 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.397 0.603 43 H 0.400 0.600 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.029 0.971 47 H 0.028 0.972 48 H 0.261 0.739 49 H 0.121 0.879 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.856 3.371 22.161 34.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.009 4.009 6 O -0.286 6.286 7 C -0.028 4.028 8 C 0.019 3.981 9 N -0.397 5.397 10 C 0.402 3.598 11 O -0.450 6.450 12 N -0.329 5.329 13 C 0.032 3.968 14 C -0.137 4.137 15 C -0.126 4.126 16 C -0.047 4.047 17 C 0.011 3.989 18 C -0.547 4.547 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.126 4.126 27 C -0.168 4.168 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.231 0.769 43 H 0.235 0.765 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.070 0.930 49 H 0.139 0.861 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.782 2.913 20.458 33.827 hybrid contribution 0.255 1.336 1.780 2.240 sum -26.527 4.249 22.237 34.875 Atomic orbital electron populations 1.22455 0.87490 1.02208 1.00469 1.61889 1.07661 1.13924 1.42766 1.22400 1.01008 0.88386 1.00490 1.22179 1.01336 0.92468 0.91436 1.22494 0.94436 0.94987 0.89005 1.88057 1.66139 1.24059 1.50392 1.22769 0.99360 0.83554 0.97106 1.21194 0.78678 1.01789 0.96414 1.44971 1.05660 1.74453 1.14650 1.15916 0.80529 0.78575 0.84802 1.90960 1.82571 1.52556 1.18903 1.42468 1.04536 1.73927 1.11966 1.17291 0.87330 1.02792 0.89355 1.21026 0.99742 1.00902 0.92052 1.20987 0.92444 0.99880 0.99248 1.20679 0.95277 0.93206 0.95529 1.18346 0.90767 0.97703 0.92112 1.21126 1.13996 0.98984 1.20573 0.92397 1.25021 0.97249 0.96683 0.95495 1.69975 1.28630 1.31484 1.23294 0.86494 0.79648 0.83777 0.77878 1.19681 1.21025 1.20989 1.20847 0.98206 1.00849 0.92731 1.20691 0.92887 1.03621 0.99569 0.95816 0.91211 0.91419 0.91075 0.91196 0.95875 0.93174 0.89844 0.93298 0.93067 0.91680 0.92853 0.90483 0.90119 0.76895 0.76541 0.85694 0.86166 0.95308 0.95356 0.92974 0.86102 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.07 0.56 0.69 16 2 N -0.54 -3.98 4.90 -251.25 -1.23 -5.21 16 3 C 0.03 0.16 9.54 60.07 0.57 0.74 16 4 C 0.05 0.32 5.38 -3.82 -0.02 0.30 16 5 C 0.07 0.39 6.13 37.15 0.23 0.61 16 6 O -0.37 -2.96 10.24 -35.23 -0.36 -3.32 16 7 C 0.05 0.31 6.07 37.16 0.23 0.53 16 8 C 0.14 1.29 6.06 -4.04 -0.02 1.26 16 9 N -0.74 -7.48 5.51 -65.22 -0.36 -7.84 16 10 C 0.70 10.14 8.31 -86.92 -0.72 9.42 16 11 O -0.57 -10.77 14.01 5.29 0.07 -10.69 16 12 N -0.68 -9.27 5.35 -14.22 -0.08 -9.35 16 13 C 0.13 2.19 6.28 -83.69 -0.53 1.66 16 14 C -0.12 -2.31 8.66 -39.40 -0.34 -2.65 16 15 C -0.11 -2.29 9.69 -39.61 -0.38 -2.68 16 16 C -0.05 -1.05 5.07 -104.59 -0.53 -1.58 16 17 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 18 C -0.51 -14.53 9.09 -34.45 -0.31 -14.84 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 22 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.11 -2.15 9.69 -39.61 -0.38 -2.54 16 27 C -0.15 -2.51 9.96 -39.39 -0.39 -2.90 16 28 H 0.02 0.11 8.09 -51.93 -0.42 -0.31 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.35 6.78 -51.93 -0.35 0.00 16 31 H 0.07 0.48 8.01 -51.93 -0.42 0.06 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 34 H 0.05 0.23 7.96 -51.93 -0.41 -0.18 16 35 H 0.08 0.52 7.85 -51.93 -0.41 0.12 16 36 H 0.05 0.25 6.76 -51.93 -0.35 -0.10 16 37 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 39 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.40 2.98 8.49 -40.82 -0.35 2.63 16 43 H 0.40 3.90 8.83 -40.82 -0.36 3.54 16 44 H 0.13 2.49 6.39 -52.48 -0.34 2.15 16 45 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 46 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 47 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 50 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 414.74 15.07 6.25 6.25 Total: -1.00 -35.22 414.74 -10.72 -45.93 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.43 Total: 2.83 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.29 Total: -9.32 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.93 Total: -48.54 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.29 Total: -14.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.22 -10.72 -45.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.242 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds