Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99872 * 2 1 4 4 C 1.46905 * 110.99825 * 123.95450 * 2 1 3 5 5 C 1.52994 * 109.47195 * 75.54344 * 4 2 1 6 6 O 1.42898 * 109.47254 * 65.38339 * 5 4 2 7 7 C 1.42901 * 113.99942 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46780 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46979 * 65.00257 * 8 7 6 10 10 C 1.34776 * 119.99609 * 179.97438 * 9 8 7 11 11 O 1.21591 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99645 * 179.97438 * 10 9 8 13 13 C 1.39952 * 119.99924 * 185.15929 * 12 10 9 14 14 C 1.38864 * 120.07009 * 33.09592 * 13 12 10 15 15 C 1.38113 * 119.93012 * 180.02562 * 14 13 12 16 16 C 1.38276 * 120.07114 * 0.02634 * 15 14 13 17 17 C 1.50693 * 119.93353 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47583 * 89.99614 * 17 16 15 19 19 H 1.08003 * 119.99912 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00498 * 180.27721 * 18 17 16 21 21 N 1.31519 * 119.99844 * 359.72605 * 20 18 17 22 22 Si 1.86807 * 120.00202 * 179.72365 * 20 18 17 23 23 H 1.48503 * 109.47070 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46810 * 120.00031 * 22 20 18 25 25 H 1.48492 * 109.47087 * 239.99953 * 22 20 18 26 26 C 1.38283 * 120.13847 * 0.22790 * 16 15 14 27 27 C 1.38117 * 120.07105 * 359.49441 * 26 16 15 28 28 H 1.09001 * 109.46943 * 296.05099 * 1 2 3 29 29 H 1.09006 * 109.46752 * 56.04381 * 1 2 3 30 30 H 1.09001 * 109.46979 * 176.04751 * 1 2 3 31 31 H 1.08993 * 109.46638 * 181.21244 * 3 2 1 32 32 H 1.09000 * 109.46854 * 301.20882 * 3 2 1 33 33 H 1.08994 * 109.47133 * 61.21262 * 3 2 1 34 34 H 1.08998 * 109.46863 * 315.54256 * 4 2 1 35 35 H 1.08997 * 109.46575 * 195.54172 * 4 2 1 36 36 H 1.09001 * 109.46968 * 305.38438 * 5 4 2 37 37 H 1.09002 * 109.47117 * 185.38581 * 5 4 2 38 38 H 1.09007 * 109.47113 * 60.00315 * 7 6 5 39 39 H 1.08992 * 109.47417 * 300.00021 * 7 6 5 40 40 H 1.08993 * 109.47212 * 304.99814 * 8 7 6 41 41 H 1.09010 * 109.46687 * 185.00132 * 8 7 6 42 42 H 0.96999 * 120.00218 * 359.97438 * 9 8 7 43 43 H 0.97004 * 120.00166 * 5.15928 * 12 10 9 44 44 H 1.08007 * 120.03571 * 0.02562 * 14 13 12 45 45 H 1.08000 * 119.96252 * 179.97438 * 15 14 13 46 46 H 1.09005 * 109.47110 * 329.99537 * 17 16 15 47 47 H 1.09003 * 109.47438 * 210.00104 * 17 16 15 48 48 H 0.96998 * 119.99636 * 180.02562 * 21 20 18 49 49 H 1.07997 * 119.96466 * 179.72525 * 26 16 15 50 50 H 1.07999 * 120.03716 * 180.24964 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8420 -2.2626 0.8595 6 8 2.6683 -2.6286 -0.2475 7 6 2.5991 -4.0138 -0.5915 8 6 3.5181 -4.2898 -1.7833 9 7 4.9102 -4.0571 -1.3906 10 6 5.9020 -4.2394 -2.2848 11 8 5.6414 -4.5966 -3.4175 12 7 7.1826 -4.0249 -1.9236 13 6 8.2024 -4.1088 -2.8785 14 6 7.9581 -3.7314 -4.1923 15 6 8.9664 -3.8159 -5.1324 16 6 10.2179 -4.2763 -4.7666 17 6 11.3156 -4.3678 -5.7950 18 6 12.0804 -3.0698 -5.8303 19 1 11.7999 -2.2597 -5.1735 20 6 13.1349 -2.9145 -6.7049 21 7 13.4768 -3.9012 -7.5045 22 14 14.0780 -1.3027 -6.7541 23 1 13.4999 -0.3605 -5.7625 24 1 15.5042 -1.5536 -6.4249 25 1 13.9800 -0.7133 -8.1135 26 6 10.4628 -4.6579 -3.4602 27 6 9.4604 -4.5704 -2.5142 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5741 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0848 1.3424 -0.0217 32 1 1.6285 1.9015 -0.8790 33 1 1.6637 1.8880 0.9006 34 1 1.4408 -0.5052 2.0390 35 1 3.0500 -0.5289 1.2784 36 1 0.8009 -2.4836 0.6243 37 1 2.1435 -2.8288 1.7408 38 1 1.5736 -4.2715 -0.8566 39 1 2.9166 -4.6159 0.2597 40 1 3.2564 -3.6241 -2.6057 41 1 3.3987 -5.3254 -2.1020 42 1 5.1181 -3.7718 -0.4871 43 1 7.3976 -3.8123 -1.0019 44 1 6.9807 -3.3720 -4.4788 45 1 8.7769 -3.5228 -6.1545 46 1 10.8798 -4.5596 -6.7755 47 1 11.9923 -5.1812 -5.5328 48 1 14.2190 -3.7920 -8.1194 49 1 11.4401 -5.0213 -3.1786 50 1 9.6534 -4.8648 -1.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932568665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = -70.039173 kcal Electronic energy + Delta-G solvation = -27569.161155 eV Core-core repulsion = 23595.503389 eV Total energy + Delta-G solvation = -3973.657766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61198 -39.84543 -39.29827 -37.83810 -36.33151 -35.67467 -34.93247 -32.36047 -31.73641 -31.26530 -29.62461 -28.47526 -28.13532 -25.24975 -24.90973 -23.89704 -23.49526 -22.32305 -21.96723 -21.55949 -19.54674 -18.60663 -18.46354 -17.78247 -17.33969 -16.89496 -16.63788 -16.40055 -16.10555 -15.92548 -15.89138 -15.69355 -15.39192 -15.12405 -14.57010 -14.48885 -14.38978 -14.24568 -14.11785 -13.63179 -13.33041 -13.25426 -13.16659 -13.11361 -12.99215 -12.62219 -12.61424 -12.47399 -12.43862 -12.22320 -12.02032 -11.72894 -11.65632 -11.52924 -11.25754 -10.89474 -10.58806 -10.46532 -10.11973 -9.72886 -9.23697 -8.78543 -8.15890 -6.30802 0.52316 0.61041 1.40632 1.41365 1.55093 1.61558 2.10275 2.42041 2.73157 3.04975 3.05883 3.12774 3.24704 3.91990 4.08405 4.15011 4.18839 4.19334 4.24923 4.34612 4.41797 4.46980 4.52659 4.53614 4.56372 4.62615 4.66063 4.69268 4.74309 4.76560 4.80392 4.91946 4.92548 5.01833 5.05075 5.15555 5.32897 5.36106 5.44169 5.45276 5.53692 5.66067 5.78536 6.00335 6.07903 6.10045 6.12095 6.16066 6.29695 6.39704 6.82118 7.02868 7.37481 7.52071 8.91899 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.001794 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.520112 B =15600.391093 C =16755.402195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.563 5.563 3 C 0.026 3.974 4 C 0.052 3.948 5 C 0.067 3.933 6 O -0.393 6.393 7 C 0.058 3.942 8 C 0.141 3.859 9 N -0.719 5.719 10 C 0.697 3.303 11 O -0.620 6.620 12 N -0.668 5.668 13 C 0.141 3.859 14 C -0.126 4.126 15 C -0.119 4.119 16 C -0.078 4.078 17 C 0.057 3.943 18 C -0.526 4.526 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.278 1.278 26 C -0.111 4.111 27 C -0.129 4.129 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.414 0.586 43 H 0.423 0.577 44 H 0.120 0.880 45 H 0.108 0.892 46 H -0.002 1.002 47 H 0.008 0.992 48 H 0.265 0.735 49 H 0.128 0.872 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.879 4.007 25.696 38.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.287 5.287 3 C -0.122 4.122 4 C -0.076 4.076 5 C -0.010 4.010 6 O -0.313 6.313 7 C -0.019 4.019 8 C 0.017 3.983 9 N -0.376 5.376 10 C 0.397 3.603 11 O -0.500 6.500 12 N -0.317 5.317 13 C 0.046 3.954 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.079 4.079 17 C 0.020 3.980 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.204 1.204 26 C -0.130 4.130 27 C -0.150 4.150 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.251 0.749 43 H 0.262 0.738 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.017 0.983 47 H 0.026 0.974 48 H 0.074 0.926 49 H 0.146 0.854 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.840 3.563 24.079 36.980 hybrid contribution 0.432 1.105 0.749 1.403 sum -27.408 4.668 24.828 37.275 Atomic orbital electron populations 1.22449 0.86723 1.02506 1.00787 1.61905 1.08600 1.14328 1.43878 1.22367 1.00548 0.88422 1.00833 1.22234 1.01083 0.92659 0.91585 1.22615 0.94449 0.94889 0.89042 1.88016 1.66879 1.24927 1.51495 1.22736 0.99332 0.83294 0.96548 1.21298 0.78360 1.01382 0.97294 1.44848 1.05236 1.72817 1.14663 1.16137 0.81156 0.78308 0.84682 1.90943 1.83257 1.54620 1.21149 1.42259 1.03583 1.73478 1.12390 1.17353 0.88414 1.00538 0.89114 1.20997 0.98862 1.01615 0.93131 1.20894 0.92753 1.00782 0.99379 1.20388 0.94633 0.96734 0.96153 1.18091 0.91473 0.96439 0.91998 1.21427 1.14553 0.99657 1.20737 0.92632 1.25956 0.98222 1.00499 0.94902 1.70099 1.29316 1.33725 1.23978 0.85367 0.78290 0.79089 0.78121 1.18868 1.19956 1.20394 1.20968 0.99493 1.00479 0.92014 1.20993 0.91412 1.01572 1.00991 0.94928 0.91546 0.91030 0.91774 0.91486 0.94936 0.91695 0.90528 0.92804 0.91003 0.90194 0.90537 0.92888 0.89886 0.74945 0.73808 0.86220 0.87374 0.98339 0.97387 0.92624 0.85410 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.40 127.69 1.20 1.43 16 2 N -0.56 -7.63 4.90 -948.83 -4.65 -12.28 16 3 C 0.03 0.32 9.54 127.69 1.22 1.54 16 4 C 0.05 0.52 5.38 86.30 0.46 0.98 16 5 C 0.07 0.58 6.13 71.98 0.44 1.02 16 6 O -0.39 -5.41 10.24 -148.98 -1.53 -6.93 16 7 C 0.06 0.56 6.07 71.98 0.44 0.99 16 8 C 0.14 2.30 6.06 86.38 0.52 2.83 16 9 N -0.72 -12.82 5.51 -478.52 -2.64 -15.46 16 10 C 0.70 18.91 8.31 179.05 1.49 20.40 16 11 O -0.62 -23.07 14.01 -4.00 -0.06 -23.13 16 12 N -0.67 -16.24 5.35 -317.17 -1.70 -17.94 16 13 C 0.14 4.63 6.28 38.14 0.24 4.87 16 14 C -0.13 -4.98 8.66 22.39 0.19 -4.79 16 15 C -0.12 -5.33 9.69 22.25 0.22 -5.12 16 16 C -0.08 -3.68 5.07 -19.85 -0.10 -3.78 16 17 C 0.06 3.19 5.10 29.10 0.15 3.34 16 18 C -0.53 -30.97 9.09 25.60 0.23 -30.74 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.00 0.12 5.46 84.65 0.46 0.58 16 21 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 22 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C -0.11 -4.35 9.69 22.25 0.22 -4.14 16 27 C -0.13 -4.04 9.96 22.39 0.22 -3.82 16 28 H 0.03 0.26 8.09 -2.39 -0.02 0.24 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.64 6.78 -2.39 -0.02 0.62 16 31 H 0.06 0.84 8.01 -2.39 -0.02 0.82 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.07 0.44 7.96 -2.39 -0.02 0.42 16 35 H 0.08 0.84 7.85 -2.39 -0.02 0.82 16 36 H 0.05 0.41 6.76 -2.39 -0.02 0.39 16 37 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.41 4.78 8.49 -92.71 -0.79 3.99 16 43 H 0.42 6.45 8.83 -92.71 -0.82 5.63 16 44 H 0.12 4.87 6.39 -2.91 -0.02 4.85 16 45 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 46 H 0.00 -0.10 8.08 -2.38 -0.02 -0.12 16 47 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 48 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 49 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 50 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -79.19 414.74 -1.32 -80.51 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -0.67 Total: 19.45 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 7.60 Total: -14.40 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -8.70 Total: -102.84 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.58 Total: -30.06 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.19 -1.32 -80.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.475 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds