Wall clock time and date at job start Tue Mar 31 2020 18:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 120.00472 * 2 1 4 4 H 1.08005 * 120.00361 * 204.06647 * 3 2 1 5 5 C 1.38821 * 119.99911 * 24.06758 * 3 2 1 6 6 N 1.31620 * 119.99674 * 14.68593 * 5 3 2 7 7 Si 1.86800 * 120.00062 * 194.68166 * 5 3 2 8 8 H 1.48497 * 109.47257 * 59.99953 * 7 5 3 9 9 H 1.48499 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47139 * 299.99800 * 7 5 3 11 11 C 1.46499 * 119.99815 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.88929 * 183.87524 * 11 2 1 13 13 C 1.55159 * 111.03549 * 307.78153 * 11 2 1 14 14 C 1.54341 * 103.02008 * 153.39561 * 13 11 2 15 15 N 1.47023 * 107.26642 * 338.14010 * 14 13 11 16 16 C 1.34772 * 125.64618 * 178.85071 * 15 14 13 17 17 O 1.21287 * 119.99827 * 184.71972 * 16 15 14 18 18 C 1.50697 * 120.00227 * 4.71407 * 16 15 14 19 19 H 1.09001 * 109.19903 * 307.14131 * 18 16 15 20 20 C 1.53289 * 109.20368 * 66.44522 * 18 16 15 21 21 N 1.46794 * 108.49766 * 60.22730 * 20 18 16 22 22 C 1.49421 * 112.10255 * 166.24418 * 21 20 18 23 23 C 1.57033 * 99.32266 * 246.53626 * 22 21 20 24 24 C 1.55457 * 101.36360 * 44.29729 * 23 22 21 25 25 C 1.49508 * 107.61179 * 57.80645 * 21 20 18 26 26 C 1.52888 * 111.06472 * 159.53122 * 25 21 20 27 27 C 1.50163 * 114.92753 * 302.46865 * 25 21 20 28 28 O 1.42793 * 109.20692 * 187.78846 * 18 16 15 29 29 C 1.47428 * 108.70124 * 358.58428 * 15 14 13 30 30 H 1.09001 * 109.46810 * 273.65850 * 1 2 3 31 31 H 1.09001 * 109.46993 * 33.65111 * 1 2 3 32 32 H 1.08993 * 109.47499 * 153.65516 * 1 2 3 33 33 H 0.96994 * 120.00001 * 180.02562 * 6 5 3 34 34 H 1.09002 * 110.72183 * 271.95552 * 13 11 2 35 35 H 1.09002 * 110.72049 * 35.22995 * 13 11 2 36 36 H 1.08998 * 109.98840 * 218.66397 * 14 13 11 37 37 H 1.08992 * 109.77514 * 97.49779 * 14 13 11 38 38 H 1.08993 * 109.63469 * 300.52130 * 20 18 16 39 39 H 1.09003 * 109.63467 * 179.97438 * 20 18 16 40 40 H 1.09001 * 111.43205 * 4.05948 * 22 21 20 41 41 H 1.09002 * 111.43144 * 129.01124 * 22 21 20 42 42 H 1.08999 * 118.35336 * 179.11939 * 23 22 21 43 43 H 1.08998 * 114.72263 * 183.08392 * 24 23 22 44 44 H 1.09004 * 114.71594 * 48.77538 * 24 23 22 45 45 H 1.09002 * 114.69692 * 52.51390 * 26 25 21 46 46 H 1.08999 * 114.69394 * 186.76106 * 26 25 21 47 47 H 1.08997 * 109.70177 * 172.77169 * 27 25 21 48 48 H 1.08998 * 109.70133 * 293.37957 * 27 25 21 49 49 H 1.08999 * 110.36084 * 143.19438 * 29 15 14 50 50 H 1.08991 * 110.36837 * 265.40451 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1594 1.2264 -0.3814 5 6 1.5462 2.3358 0.4903 6 7 0.4487 2.2468 1.2114 7 14 2.2918 4.0095 0.1267 8 1 2.3333 4.2245 -1.3420 9 1 1.4635 5.0680 0.7582 10 1 3.6708 4.0667 0.6745 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0974 0.0683 13 6 1.7075 -2.1952 1.1436 14 6 2.0203 -3.6075 0.6055 15 7 2.1183 -3.5051 -0.8579 16 6 2.4018 -4.5193 -1.6990 17 8 2.5416 -4.3031 -2.8842 18 6 2.5453 -5.9219 -1.1668 19 1 3.2647 -5.9227 -0.3480 20 6 1.1874 -6.4042 -0.6442 21 7 0.2280 -6.3871 -1.7551 22 6 -1.0203 -7.1420 -1.4317 23 6 -0.8759 -8.3231 -2.4564 24 6 0.6234 -8.6962 -2.2846 25 6 0.7733 -7.2627 -2.8373 26 6 -0.3340 -7.7118 -3.7911 27 6 2.1345 -6.8753 -3.3392 28 8 3.0198 -6.7738 -2.2099 29 6 1.8487 -2.1107 -1.2533 30 1 -0.3633 0.0656 1.0256 31 1 -0.3633 0.8555 -0.5695 32 1 -0.3634 -0.9208 -0.4560 33 1 0.0268 3.0503 1.5537 34 1 2.2603 -1.9988 2.0623 35 1 0.6359 -2.0762 1.3041 36 1 1.2191 -4.2952 0.8762 37 1 2.9669 -3.9576 1.0168 38 1 0.8426 -5.7395 0.1477 39 1 1.2831 -7.4189 -0.2578 40 1 -1.0119 -7.5037 -0.4035 41 1 -1.9100 -6.5457 -1.6340 42 1 -1.6475 -9.0929 -2.4710 43 1 0.9771 -9.4817 -2.9524 44 1 0.9461 -8.8223 -1.2511 45 1 -0.9389 -6.9024 -4.2000 46 1 -0.0242 -8.4454 -4.5353 47 1 2.5026 -7.6362 -4.0275 48 1 2.0781 -5.9138 -3.8495 49 1 2.4840 -1.8246 -2.0915 50 1 0.7980 -1.9870 -1.5151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971969522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:29 Heat of formation + Delta-G solvation = 45.186132 kcal Electronic energy + Delta-G solvation = -31039.986910 eV Core-core repulsion = 27071.325688 eV Total energy + Delta-G solvation = -3968.661222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.47093 -39.92229 -38.03670 -36.58178 -34.90044 -33.91272 -31.68100 -30.05844 -29.60783 -29.43533 -27.67383 -26.04807 -25.83451 -24.81749 -24.20919 -22.91904 -22.20668 -20.68584 -19.92622 -19.30204 -18.54281 -17.09782 -17.06967 -16.76358 -16.22509 -16.02537 -15.65051 -15.10078 -14.98911 -14.69305 -14.41844 -14.01467 -13.58763 -13.42996 -13.31385 -13.22879 -13.02585 -12.69252 -12.48257 -12.46070 -12.13476 -12.00252 -11.93513 -11.70021 -11.49219 -11.30140 -11.18409 -10.95362 -10.77429 -10.74542 -10.50380 -10.49961 -10.47581 -10.25612 -10.19479 -9.89122 -9.84260 -9.11216 -8.66553 -8.57178 -8.27822 -6.79099 -5.77468 -3.24614 2.78471 3.17117 3.38187 3.41445 3.43641 3.45713 3.53532 3.92016 4.04769 4.24699 4.29585 4.46596 4.51879 4.66363 4.79603 4.83460 5.02020 5.03508 5.13649 5.14786 5.28608 5.31242 5.37978 5.39921 5.44448 5.48895 5.54132 5.56540 5.59391 5.62388 5.69931 5.81155 5.81717 5.92227 5.98944 6.03953 6.28156 6.34342 6.40706 6.55446 6.59025 6.66127 6.78206 6.85456 6.89740 7.31759 7.66543 7.77916 7.82891 8.34685 8.40519 9.18337 9.80905 10.30240 11.27407 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.002752 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.697348 B =10172.940003 C =10438.132545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.007 3.993 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.150 4.150 14 C 0.097 3.903 15 N -0.607 5.607 16 C 0.519 3.481 17 O -0.535 6.535 18 C 0.081 3.919 19 H 0.127 0.873 20 C 0.006 3.994 21 N -0.467 5.467 22 C 0.035 3.965 23 C -0.143 4.143 24 C -0.176 4.176 25 C 0.018 3.982 26 C -0.110 4.110 27 C 0.073 3.927 28 O -0.356 6.356 29 C 0.088 3.912 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -23.581 -3.085 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.190 4.190 14 C -0.026 4.026 15 N -0.342 5.342 16 C 0.306 3.694 17 O -0.413 6.413 18 C 0.019 3.981 19 H 0.144 0.856 20 C -0.122 4.122 21 N -0.190 5.190 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.214 4.214 25 C -0.072 4.072 26 C -0.147 4.147 27 C -0.003 4.003 28 O -0.273 6.273 29 C -0.037 4.037 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.089 0.911 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.439 -22.804 -3.799 23.163 hybrid contribution 0.134 0.135 0.403 0.446 sum -1.304 -22.669 -3.396 22.959 Atomic orbital electron populations 1.20782 0.82547 0.95877 0.99298 1.43780 1.01788 0.99858 1.84960 1.19169 0.99224 0.85480 1.35288 0.91359 1.25026 0.98086 0.98607 0.97530 1.70057 1.21172 1.27649 1.35866 0.86327 0.78392 0.83670 0.78091 1.20972 1.21631 1.20858 1.21414 0.96369 0.85849 0.90100 0.90431 1.23199 1.02831 0.92482 1.00457 1.22200 1.00350 0.99637 0.80398 1.48457 1.68722 1.09796 1.07210 1.20681 0.76436 0.86036 0.86209 1.90582 1.51143 1.83809 1.15778 1.22078 0.96559 0.88059 0.91434 0.85605 1.23199 0.92120 1.01732 0.95184 1.67246 1.03270 1.42441 1.06085 1.23853 0.94486 0.93159 0.97807 1.24881 0.96699 0.98403 0.96220 1.24560 0.96669 0.98343 1.01869 1.23395 0.96549 0.91290 0.96012 1.23286 0.96420 1.00315 0.94694 1.22167 0.85577 1.04122 0.88408 1.88122 1.45461 1.65175 1.28546 1.22980 1.01150 0.79183 1.00368 0.95029 0.93965 0.97921 0.93618 0.90484 0.90525 0.92015 0.91881 0.88100 0.92061 0.91046 0.88905 0.87435 0.88933 0.91247 0.90377 0.88126 0.88527 0.88153 0.91092 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 7.58 59.85 0.45 4.25 16 2 N -0.58 -14.16 2.95 -171.03 -0.51 -14.66 16 3 C -0.26 -7.06 9.58 -15.06 -0.14 -7.21 16 4 H 0.07 1.81 7.87 -52.48 -0.41 1.39 16 5 C 0.01 0.18 5.05 -17.43 -0.09 0.09 16 6 N -0.90 -25.75 10.88 55.49 0.60 -25.15 16 7 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.43 3.54 -65.78 -0.23 3.20 16 12 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 13 C -0.15 -2.43 6.50 -24.89 -0.16 -2.59 16 14 C 0.10 1.27 6.14 -3.05 -0.02 1.25 16 15 N -0.61 -9.66 3.32 -170.51 -0.57 -10.23 16 16 C 0.52 8.43 6.54 -10.99 -0.07 8.36 16 17 O -0.54 -10.54 14.01 -14.39 -0.20 -10.74 16 18 C 0.08 1.02 3.07 -27.74 -0.09 0.94 16 19 H 0.13 1.30 8.03 -51.93 -0.42 0.89 16 20 C 0.01 0.07 4.79 -3.73 -0.02 0.05 16 21 N -0.47 -5.53 5.57 -227.97 -1.27 -6.80 16 22 C 0.03 0.32 7.02 -0.23 0.00 0.32 16 23 C -0.14 -1.15 6.40 -98.00 -0.63 -1.78 16 24 C -0.18 -1.53 7.01 -30.15 -0.21 -1.74 16 25 C 0.02 0.19 1.59 -143.65 -0.23 -0.03 16 26 C -0.11 -0.97 7.81 -30.36 -0.24 -1.21 16 27 C 0.07 0.93 6.16 35.75 0.22 1.15 16 28 O -0.36 -4.89 10.50 -55.17 -0.58 -5.47 16 29 C 0.09 1.64 6.49 -2.52 -0.02 1.63 16 30 H 0.03 0.80 7.40 -51.93 -0.38 0.42 16 31 H 0.04 1.09 7.36 -51.93 -0.38 0.71 16 32 H 0.00 0.05 6.40 -51.93 -0.33 -0.28 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.33 7.03 -51.93 -0.36 0.97 16 36 H 0.06 0.69 5.68 -51.93 -0.29 0.39 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.03 5.29 -51.93 -0.27 0.75 16 39 H 0.06 0.57 5.98 -51.93 -0.31 0.26 16 40 H 0.07 0.58 7.73 -51.93 -0.40 0.18 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.70 7.85 -51.93 -0.41 0.29 16 44 H 0.07 0.63 6.08 -51.93 -0.32 0.32 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.70 7.84 -51.93 -0.41 0.29 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.10 1.57 5.53 -51.93 -0.29 1.28 16 49 H 0.07 1.44 7.99 -51.93 -0.41 1.02 16 50 H 0.07 1.35 6.41 -51.93 -0.33 1.01 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -31.67 369.02 -11.28 -42.95 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.83 Total: 1.28 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.47 Total: 6.67 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -1.74 Total: -56.84 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.78 Total: -16.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.67 -11.28 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.137 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds