Wall clock time and date at job start Tue Mar 31 2020 18:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 120.00472 * 2 1 4 4 H 1.08005 * 120.00361 * 204.06647 * 3 2 1 5 5 C 1.38821 * 119.99911 * 24.06758 * 3 2 1 6 6 N 1.31620 * 119.99674 * 14.68593 * 5 3 2 7 7 Si 1.86800 * 120.00062 * 194.68166 * 5 3 2 8 8 H 1.48497 * 109.47257 * 59.99953 * 7 5 3 9 9 H 1.48499 * 109.46855 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47139 * 299.99800 * 7 5 3 11 11 C 1.46499 * 119.99815 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.88929 * 183.87524 * 11 2 1 13 13 C 1.55159 * 111.03549 * 307.78153 * 11 2 1 14 14 C 1.54341 * 103.02008 * 153.39561 * 13 11 2 15 15 N 1.47023 * 107.26642 * 338.14010 * 14 13 11 16 16 C 1.34772 * 125.64618 * 178.85071 * 15 14 13 17 17 O 1.21287 * 119.99827 * 184.71972 * 16 15 14 18 18 C 1.50697 * 120.00227 * 4.71407 * 16 15 14 19 19 H 1.09001 * 109.19903 * 307.14131 * 18 16 15 20 20 C 1.53289 * 109.20368 * 66.44522 * 18 16 15 21 21 N 1.46794 * 108.49766 * 60.22730 * 20 18 16 22 22 C 1.49421 * 112.10255 * 166.24418 * 21 20 18 23 23 C 1.57033 * 99.32266 * 246.53626 * 22 21 20 24 24 C 1.55457 * 101.36360 * 44.29729 * 23 22 21 25 25 C 1.49508 * 107.61179 * 57.80645 * 21 20 18 26 26 C 1.52888 * 111.06472 * 159.53122 * 25 21 20 27 27 C 1.50163 * 114.92753 * 302.46865 * 25 21 20 28 28 O 1.42793 * 109.20692 * 187.78846 * 18 16 15 29 29 C 1.47428 * 108.70124 * 358.58428 * 15 14 13 30 30 H 1.09001 * 109.46810 * 273.65850 * 1 2 3 31 31 H 1.09001 * 109.46993 * 33.65111 * 1 2 3 32 32 H 1.08993 * 109.47499 * 153.65516 * 1 2 3 33 33 H 0.96994 * 120.00001 * 180.02562 * 6 5 3 34 34 H 1.09002 * 110.72183 * 271.95552 * 13 11 2 35 35 H 1.09002 * 110.72049 * 35.22995 * 13 11 2 36 36 H 1.08998 * 109.98840 * 218.66397 * 14 13 11 37 37 H 1.08992 * 109.77514 * 97.49779 * 14 13 11 38 38 H 1.08993 * 109.63469 * 300.52130 * 20 18 16 39 39 H 1.09003 * 109.63467 * 179.97438 * 20 18 16 40 40 H 1.09001 * 111.43205 * 4.05948 * 22 21 20 41 41 H 1.09002 * 111.43144 * 129.01124 * 22 21 20 42 42 H 1.08999 * 118.35336 * 179.11939 * 23 22 21 43 43 H 1.08998 * 114.72263 * 183.08392 * 24 23 22 44 44 H 1.09004 * 114.71594 * 48.77538 * 24 23 22 45 45 H 1.09002 * 114.69692 * 52.51390 * 26 25 21 46 46 H 1.08999 * 114.69394 * 186.76106 * 26 25 21 47 47 H 1.08997 * 109.70177 * 172.77169 * 27 25 21 48 48 H 1.08998 * 109.70133 * 293.37957 * 27 25 21 49 49 H 1.08999 * 110.36084 * 143.19438 * 29 15 14 50 50 H 1.08991 * 110.36837 * 265.40451 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1594 1.2264 -0.3814 5 6 1.5462 2.3358 0.4903 6 7 0.4487 2.2468 1.2114 7 14 2.2918 4.0095 0.1267 8 1 2.3333 4.2245 -1.3420 9 1 1.4635 5.0680 0.7582 10 1 3.6708 4.0667 0.6745 11 6 2.1974 -1.2687 -0.0006 12 1 3.2716 -1.0974 0.0683 13 6 1.7075 -2.1952 1.1436 14 6 2.0203 -3.6075 0.6055 15 7 2.1183 -3.5051 -0.8579 16 6 2.4018 -4.5193 -1.6990 17 8 2.5416 -4.3031 -2.8842 18 6 2.5453 -5.9219 -1.1668 19 1 3.2647 -5.9227 -0.3480 20 6 1.1874 -6.4042 -0.6442 21 7 0.2280 -6.3871 -1.7551 22 6 -1.0203 -7.1420 -1.4317 23 6 -0.8759 -8.3231 -2.4564 24 6 0.6234 -8.6962 -2.2846 25 6 0.7733 -7.2627 -2.8373 26 6 -0.3340 -7.7118 -3.7911 27 6 2.1345 -6.8753 -3.3392 28 8 3.0198 -6.7738 -2.2099 29 6 1.8487 -2.1107 -1.2533 30 1 -0.3633 0.0656 1.0256 31 1 -0.3633 0.8555 -0.5695 32 1 -0.3634 -0.9208 -0.4560 33 1 0.0268 3.0503 1.5537 34 1 2.2603 -1.9988 2.0623 35 1 0.6359 -2.0762 1.3041 36 1 1.2191 -4.2952 0.8762 37 1 2.9669 -3.9576 1.0168 38 1 0.8426 -5.7395 0.1477 39 1 1.2831 -7.4189 -0.2578 40 1 -1.0119 -7.5037 -0.4035 41 1 -1.9100 -6.5457 -1.6340 42 1 -1.6475 -9.0929 -2.4710 43 1 0.9771 -9.4817 -2.9524 44 1 0.9461 -8.8223 -1.2511 45 1 -0.9389 -6.9024 -4.2000 46 1 -0.0242 -8.4454 -4.5353 47 1 2.5026 -7.6362 -4.0275 48 1 2.0781 -5.9138 -3.8495 49 1 2.4840 -1.8246 -2.0915 50 1 0.7980 -1.9870 -1.5151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971969522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:28 Heat of formation + Delta-G solvation = 23.631828 kcal Electronic energy + Delta-G solvation = -31040.921575 eV Core-core repulsion = 27071.325688 eV Total energy + Delta-G solvation = -3969.595887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.24081 -41.14505 -39.33287 -37.83053 -36.59063 -34.84334 -33.42941 -31.50958 -30.59047 -30.39710 -29.07042 -28.05302 -26.58468 -25.87020 -25.23285 -24.42325 -23.47283 -21.42463 -21.03343 -20.82478 -19.59432 -18.94780 -18.13117 -17.79637 -17.52580 -17.07776 -16.71112 -16.37143 -16.18758 -16.04652 -15.46015 -15.25271 -15.04612 -14.83340 -14.53103 -14.36331 -14.20192 -14.01954 -13.88526 -13.64575 -13.37365 -13.05734 -12.95460 -12.82066 -12.78172 -12.56652 -12.46586 -12.42202 -12.21867 -12.16758 -12.11843 -11.98573 -11.84462 -11.57058 -11.39705 -11.19452 -11.11684 -10.64828 -10.18556 -9.62407 -9.49171 -8.78098 -7.85601 -5.34627 1.46355 1.49332 1.55321 1.56664 1.91807 2.50641 2.59567 2.68549 3.25620 3.26988 3.35640 3.40948 3.51301 3.54783 3.58301 3.84214 3.91814 3.97210 4.06364 4.10137 4.19051 4.25483 4.35140 4.40065 4.45305 4.48178 4.57650 4.68310 4.71852 4.75108 4.79009 4.83257 4.86186 4.91189 4.91932 4.97936 5.02124 5.08338 5.18009 5.20458 5.24634 5.29325 5.42206 5.53922 5.63076 5.67505 5.83462 5.89458 6.30918 6.57452 7.11567 7.14463 7.82707 8.27504 9.17321 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.002752 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.697348 B =10172.940003 C =10438.132545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.600 5.600 3 C -0.273 4.273 4 H 0.067 0.933 5 C -0.044 4.044 6 N -0.931 5.931 7 Si 0.966 3.034 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.274 1.274 11 C 0.167 3.833 12 H 0.072 0.928 13 C -0.139 4.139 14 C 0.104 3.896 15 N -0.607 5.607 16 C 0.512 3.488 17 O -0.579 6.579 18 C 0.084 3.916 19 H 0.155 0.845 20 C 0.012 3.988 21 N -0.501 5.501 22 C 0.031 3.969 23 C -0.129 4.129 24 C -0.162 4.162 25 C 0.001 3.999 26 C -0.111 4.111 27 C 0.073 3.927 28 O -0.367 6.367 29 C 0.102 3.898 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.026 0.974 33 H 0.250 0.750 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -26.517 -1.984 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.321 5.321 3 C -0.403 4.403 4 H 0.085 0.915 5 C -0.240 4.240 6 N -0.576 5.576 7 Si 0.794 3.206 8 H -0.210 1.210 9 H -0.218 1.218 10 H -0.199 1.199 11 C 0.058 3.942 12 H 0.090 0.910 13 C -0.178 4.178 14 C -0.018 4.018 15 N -0.341 5.341 16 C 0.302 3.698 17 O -0.459 6.459 18 C 0.023 3.977 19 H 0.172 0.828 20 C -0.116 4.116 21 N -0.225 5.225 22 C -0.096 4.096 23 C -0.147 4.147 24 C -0.200 4.200 25 C -0.089 4.089 26 C -0.149 4.149 27 C -0.003 4.003 28 O -0.284 6.284 29 C -0.024 4.024 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.148 0.852 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.124 -25.785 -2.681 25.949 hybrid contribution 0.074 1.036 -0.034 1.039 sum -1.050 -24.750 -2.715 24.920 Atomic orbital electron populations 1.20467 0.82707 0.95636 0.97740 1.43925 1.01958 1.00851 1.85391 1.19462 0.99312 0.86886 1.34596 0.91483 1.25726 0.98768 1.01669 0.97826 1.70194 1.22406 1.28021 1.37016 0.85368 0.77891 0.79698 0.77629 1.20964 1.21825 1.19916 1.21523 0.95728 0.84921 0.92074 0.90983 1.23027 1.02070 0.93420 0.99313 1.22355 1.03273 0.98009 0.78188 1.48506 1.68622 1.08374 1.08618 1.21545 0.75202 0.87373 0.85655 1.90581 1.52888 1.84621 1.17807 1.22288 0.98737 0.85087 0.91618 0.82767 1.23191 0.90605 1.02905 0.94909 1.67204 1.04472 1.43963 1.06856 1.23919 0.93155 0.93381 0.99129 1.24842 0.97020 0.98110 0.94771 1.24491 0.96793 0.96763 1.01971 1.23461 0.95908 0.92719 0.96836 1.23413 0.95649 1.00335 0.95493 1.22141 0.87063 1.02749 0.88369 1.88095 1.46340 1.64955 1.28995 1.22543 0.99483 0.81301 0.99063 0.96885 0.96990 0.95533 0.94093 0.89555 0.91603 0.89064 0.88527 0.87400 0.89934 0.89422 0.89689 0.85180 0.87508 0.91193 0.92231 0.86073 0.86623 0.92036 0.93520 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 7.58 127.77 0.97 9.74 16 2 N -0.60 -29.69 2.95 -695.02 -2.05 -31.74 16 3 C -0.27 -14.94 9.58 84.04 0.81 -14.14 16 4 H 0.07 3.61 7.87 -2.91 -0.02 3.58 16 5 C -0.04 -2.44 5.05 84.86 0.43 -2.01 16 6 N -0.93 -54.20 10.88 21.65 0.24 -53.96 16 7 Si 0.97 45.03 29.58 68.60 2.03 47.06 16 8 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 C 0.17 6.60 3.54 46.39 0.16 6.77 16 12 H 0.07 2.92 7.96 -2.39 -0.02 2.90 16 13 C -0.14 -4.28 6.50 31.79 0.21 -4.07 16 14 C 0.10 2.39 6.14 86.73 0.53 2.92 16 15 N -0.61 -18.67 3.32 -811.77 -2.70 -21.37 16 16 C 0.51 16.31 6.54 87.66 0.57 16.89 16 17 O -0.58 -23.47 14.01 16.02 0.22 -23.24 16 18 C 0.08 1.93 3.07 29.94 0.09 2.02 16 19 H 0.16 2.59 8.03 -2.39 -0.02 2.57 16 20 C 0.01 0.23 4.79 86.42 0.41 0.64 16 21 N -0.50 -10.96 5.57 -875.15 -4.87 -15.83 16 22 C 0.03 0.50 7.02 87.23 0.61 1.12 16 23 C -0.13 -1.67 6.40 -15.58 -0.10 -1.77 16 24 C -0.16 -2.25 7.01 28.38 0.20 -2.05 16 25 C 0.00 0.02 1.59 -5.73 -0.01 0.01 16 26 C -0.11 -1.79 7.81 28.24 0.22 -1.57 16 27 C 0.07 1.79 6.16 71.07 0.44 2.23 16 28 O -0.37 -9.48 10.50 -129.91 -1.36 -10.85 16 29 C 0.10 3.88 6.49 86.86 0.56 4.45 16 30 H 0.01 0.68 7.40 -2.39 -0.02 0.66 16 31 H 0.01 0.62 7.36 -2.39 -0.02 0.60 16 32 H 0.03 1.14 6.40 -2.39 -0.02 1.12 16 33 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.07 2.20 7.03 -2.39 -0.02 2.18 16 36 H 0.09 1.65 5.68 -2.39 -0.01 1.64 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.11 1.77 5.29 -2.39 -0.01 1.76 16 39 H 0.08 1.19 5.98 -2.39 -0.01 1.18 16 40 H 0.09 1.11 7.73 -2.39 -0.02 1.09 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 1.19 7.85 -2.39 -0.02 1.17 16 44 H 0.07 0.98 6.08 -2.39 -0.01 0.97 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.12 1.39 7.84 -2.39 -0.02 1.37 16 47 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.06 2.00 5.53 -2.39 -0.01 1.99 16 49 H 0.05 1.98 7.99 -2.39 -0.02 1.96 16 50 H 0.05 2.10 6.41 -2.39 -0.02 2.09 16 Total: -1.00 -71.79 369.02 -1.44 -73.23 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.95 Total: 15.51 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.11 Total: 21.18 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -9.39 Total: -122.90 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.14 Total: -34.09 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.79 -1.44 -73.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.864 kcal (2) G-P(sol) polarization free energy of solvation -71.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds