Wall clock time and date at job start Tue Mar 31 2020 18:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99978 * 2 1 4 4 H 1.07995 * 120.00187 * 203.94674 * 3 2 1 5 5 C 1.38811 * 119.99740 * 23.95149 * 3 2 1 6 6 N 1.31620 * 120.00330 * 11.13718 * 5 3 2 7 7 Si 1.86807 * 120.00031 * 191.13893 * 5 3 2 8 8 H 1.48496 * 109.47034 * 59.99986 * 7 5 3 9 9 H 1.48496 * 109.47411 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46997 * 300.00347 * 7 5 3 11 11 C 1.46495 * 119.99970 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.88741 * 182.42335 * 11 2 1 13 13 C 1.55155 * 111.00660 * 58.54854 * 11 2 1 14 14 C 1.54317 * 102.94506 * 206.42307 * 13 11 2 15 15 N 1.47028 * 107.27028 * 22.19119 * 14 13 11 16 16 C 1.34769 * 125.64813 * 181.02477 * 15 14 13 17 17 O 1.21280 * 120.00321 * 184.97843 * 16 15 14 18 18 C 1.50703 * 120.00303 * 4.70321 * 16 15 14 19 19 H 1.09006 * 109.20228 * 51.16874 * 18 16 15 20 20 C 1.53290 * 109.20544 * 291.86631 * 18 16 15 21 21 N 1.46783 * 108.50110 * 299.77625 * 20 18 16 22 22 C 1.49430 * 112.10280 * 193.76454 * 21 20 18 23 23 C 1.57024 * 99.32485 * 113.45502 * 22 21 20 24 24 C 1.56483 * 107.13462 * 40.31951 * 23 22 21 25 25 C 1.49516 * 107.60889 * 302.19579 * 21 20 18 26 26 C 1.54375 * 104.43110 * 288.56796 * 25 21 20 27 27 C 1.50160 * 114.92667 * 57.52974 * 25 21 20 28 28 O 1.42794 * 109.20915 * 170.52566 * 18 16 15 29 29 C 1.47419 * 108.70033 * 1.28600 * 15 14 13 30 30 H 1.08996 * 109.47182 * 267.33291 * 1 2 3 31 31 H 1.08997 * 109.46697 * 27.33308 * 1 2 3 32 32 H 1.09000 * 109.47225 * 147.33168 * 1 2 3 33 33 H 0.96999 * 120.00231 * 179.97438 * 6 5 3 34 34 H 1.08995 * 110.72339 * 88.05441 * 13 11 2 35 35 H 1.09001 * 110.71748 * 324.78637 * 13 11 2 36 36 H 1.08999 * 109.88314 * 262.77425 * 14 13 11 37 37 H 1.09003 * 110.01624 * 141.67911 * 14 13 11 38 38 H 1.09003 * 109.63285 * 59.47882 * 20 18 16 39 39 H 1.08996 * 109.62982 * 180.02562 * 20 18 16 40 40 H 1.08996 * 111.42414 * 230.98283 * 22 21 20 41 41 H 1.08999 * 111.42814 * 355.87563 * 22 21 20 42 42 H 1.09004 * 118.34881 * 180.88658 * 23 22 21 43 43 H 1.08998 * 114.69658 * 190.07074 * 24 23 22 44 44 H 1.08994 * 114.69819 * 55.81718 * 24 23 22 45 45 H 1.09005 * 114.71904 * 45.65578 * 26 25 21 46 46 H 1.08994 * 114.72528 * 179.97438 * 26 25 21 47 47 H 1.09002 * 109.70010 * 187.22717 * 27 25 21 48 48 H 1.09000 * 109.70478 * 66.61446 * 27 25 21 49 49 H 1.09003 * 110.36426 * 94.48332 * 29 15 14 50 50 H 1.09000 * 110.36891 * 216.80384 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1600 1.2262 -0.3796 5 6 1.5453 2.3363 0.4880 6 7 0.4093 2.2537 1.1476 7 14 2.3441 4.0017 0.2086 8 1 2.4682 4.2527 -1.2497 9 1 1.5059 5.0622 0.8233 10 1 3.6930 4.0140 0.8296 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0965 0.0426 13 6 1.8211 -2.1277 -1.2366 14 6 2.0896 -3.5678 -0.7515 15 7 2.0420 -3.5494 0.7179 16 6 2.2463 -4.6102 1.5237 17 8 2.0936 -4.5000 2.7218 18 6 2.6584 -5.9351 0.9355 19 1 3.5166 -5.7851 0.2804 20 6 1.4950 -6.5075 0.1178 21 7 0.3451 -6.6934 1.0109 22 6 -0.7167 -7.5428 0.3910 23 6 -0.6299 -8.7912 1.3394 24 6 -0.4330 -8.2516 2.7950 25 6 0.7742 -7.6026 2.1176 26 6 0.9086 -8.9870 1.4479 27 6 1.9562 -7.1219 2.9091 28 8 3.0232 -6.8247 1.9912 29 6 1.7275 -2.1799 1.1635 30 1 -0.3633 -0.0478 1.0265 31 1 -0.3632 0.9129 -0.4719 32 1 -0.3634 -0.8651 -0.5547 33 1 -0.0129 3.0575 1.4890 34 1 2.4585 -1.8817 -2.0858 35 1 0.7695 -1.9964 -1.4916 36 1 3.0742 -3.8943 -1.0864 37 1 1.3245 -4.2407 -1.1387 38 1 1.2309 -5.8127 -0.6794 39 1 1.7857 -7.4666 -0.3107 40 1 -1.6943 -7.0646 0.4506 41 1 -0.4673 -7.8047 -0.6373 42 1 -1.2905 -9.6361 1.1447 43 1 -0.1854 -9.0138 3.5337 44 1 -1.1989 -7.5515 3.1286 45 1 1.4369 -8.9828 0.4944 46 1 1.2199 -9.7889 2.1172 47 1 2.2746 -7.8998 3.6031 48 1 1.6866 -6.2225 3.4627 49 1 0.6550 -2.0703 1.3248 50 1 2.2752 -1.9424 2.0755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971969524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:33 Heat of formation + Delta-G solvation = 47.156024 kcal Electronic energy + Delta-G solvation = -31043.373795 eV Core-core repulsion = 27074.797994 eV Total energy + Delta-G solvation = -3968.575801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.45722 -39.89377 -38.01949 -36.55492 -34.90358 -33.90206 -31.68874 -30.03566 -29.58477 -29.43334 -27.62782 -26.05836 -25.82278 -24.80035 -24.21001 -22.90012 -22.20257 -20.67680 -19.91769 -19.28017 -18.54651 -17.09739 -17.04718 -16.74372 -16.18406 -16.01273 -15.64921 -15.11136 -14.92828 -14.68496 -14.48052 -13.97902 -13.56619 -13.39038 -13.32731 -13.15848 -13.03818 -12.67756 -12.48202 -12.36244 -12.13169 -12.01020 -11.93989 -11.69665 -11.51640 -11.38803 -11.17177 -10.88910 -10.80227 -10.72903 -10.49152 -10.46233 -10.43536 -10.28169 -10.17074 -9.90711 -9.81595 -9.08152 -8.63003 -8.56670 -8.23454 -6.78941 -5.78204 -3.24834 2.82401 3.19834 3.37689 3.42546 3.43229 3.43939 3.56103 3.92999 4.05979 4.26057 4.31361 4.45194 4.53212 4.68868 4.80628 4.84548 5.00637 5.03673 5.14151 5.16455 5.29556 5.32015 5.36973 5.40922 5.43225 5.49892 5.53819 5.56855 5.60547 5.65048 5.71442 5.82868 5.84519 5.90670 6.01548 6.04351 6.29740 6.32596 6.42757 6.57183 6.59756 6.66379 6.82893 6.87949 6.90630 7.35607 7.67942 7.77715 7.86672 8.35995 8.44506 9.18785 9.80587 10.30111 11.27838 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.002726 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.119736 B =10270.422149 C =10385.291131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.608 5.608 16 C 0.518 3.482 17 O -0.533 6.533 18 C 0.081 3.919 19 H 0.127 0.873 20 C 0.005 3.995 21 N -0.467 5.467 22 C 0.034 3.966 23 C -0.143 4.143 24 C -0.110 4.110 25 C 0.019 3.981 26 C -0.176 4.176 27 C 0.072 3.928 28 O -0.357 6.357 29 C 0.090 3.910 30 H 0.021 0.979 31 H 0.057 0.943 32 H -0.002 1.002 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.068 0.932 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -23.725 -3.760 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.304 5.304 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.344 5.344 16 C 0.305 3.695 17 O -0.411 6.411 18 C 0.019 3.981 19 H 0.144 0.856 20 C -0.124 4.124 21 N -0.190 5.190 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.147 4.147 25 C -0.072 4.072 26 C -0.214 4.214 27 C -0.004 4.004 28 O -0.273 6.273 29 C -0.034 4.034 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.398 -23.006 -2.818 23.181 hybrid contribution 0.371 0.147 -0.546 0.676 sum -0.027 -22.859 -3.364 23.105 Atomic orbital electron populations 1.20795 0.82415 0.97043 0.98124 1.43837 1.01896 0.99826 1.84850 1.19182 0.99089 0.85433 1.35434 0.91292 1.25084 0.97781 0.98769 0.97721 1.70055 1.18732 1.27718 1.38358 0.86291 0.78587 0.83527 0.77830 1.20989 1.21596 1.20852 1.21510 0.96309 0.85798 0.90197 0.90433 1.23191 1.02904 0.92692 1.00556 1.22165 1.00365 0.99303 0.80534 1.48517 1.69121 1.09794 1.06927 1.20693 0.77361 0.84748 0.86676 1.90579 1.52126 1.83473 1.14903 1.22083 0.98368 0.87992 0.89692 0.85599 1.23227 0.91169 1.01579 0.96453 1.67251 1.07293 1.37388 1.07083 1.23850 0.97196 0.91511 0.96772 1.24879 0.97006 0.98493 0.95833 1.23285 0.96912 0.99406 0.95115 1.23387 0.97182 0.90864 0.95725 1.24563 0.96278 0.98904 1.01702 1.22190 0.84452 1.02516 0.91236 1.88120 1.36128 1.63698 1.39396 1.23072 1.01081 0.79168 1.00084 0.96097 0.92439 0.98376 0.93512 0.90620 0.90452 0.91986 0.91953 0.88075 0.92095 0.88935 0.91079 0.87451 0.88122 0.90358 0.91266 0.88938 0.88557 0.87969 0.91421 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.71 59.85 0.46 4.33 16 2 N -0.58 -14.18 2.96 -170.90 -0.51 -14.68 16 3 C -0.26 -7.02 9.60 -15.06 -0.14 -7.16 16 4 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 5 C 0.01 0.15 5.09 -17.43 -0.09 0.06 16 6 N -0.90 -26.10 10.71 55.49 0.59 -25.50 16 7 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.41 3.56 -65.67 -0.23 3.18 16 12 H 0.08 1.55 7.96 -51.93 -0.41 1.14 16 13 C -0.15 -2.37 6.51 -24.90 -0.16 -2.53 16 14 C 0.10 1.28 5.97 -3.06 -0.02 1.26 16 15 N -0.61 -9.94 3.32 -170.39 -0.57 -10.50 16 16 C 0.52 8.66 6.58 -10.99 -0.07 8.59 16 17 O -0.53 -10.87 14.02 -14.32 -0.20 -11.07 16 18 C 0.08 1.04 3.10 -27.73 -0.09 0.95 16 19 H 0.13 1.33 8.01 -51.93 -0.42 0.91 16 20 C 0.00 0.05 4.77 -3.74 -0.02 0.03 16 21 N -0.47 -5.60 5.57 -227.96 -1.27 -6.87 16 22 C 0.03 0.32 7.02 -0.23 0.00 0.32 16 23 C -0.14 -1.16 6.40 -98.00 -0.63 -1.79 16 24 C -0.11 -1.00 7.81 -30.35 -0.24 -1.23 16 25 C 0.02 0.21 1.59 -143.64 -0.23 -0.02 16 26 C -0.18 -1.55 7.01 -30.13 -0.21 -1.76 16 27 C 0.07 0.94 6.16 35.74 0.22 1.16 16 28 O -0.36 -5.00 10.51 -55.11 -0.58 -5.58 16 29 C 0.09 1.78 6.45 -2.42 -0.02 1.76 16 30 H 0.02 0.55 7.62 -51.93 -0.40 0.15 16 31 H 0.06 1.50 6.82 -51.93 -0.35 1.15 16 32 H 0.00 -0.04 6.30 -51.93 -0.33 -0.37 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.26 6.28 -51.93 -0.33 0.93 16 36 H 0.06 0.65 8.05 -51.93 -0.42 0.24 16 37 H 0.06 0.70 5.79 -51.93 -0.30 0.40 16 38 H 0.10 1.01 5.08 -51.93 -0.26 0.75 16 39 H 0.06 0.57 5.97 -51.93 -0.31 0.26 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.57 7.73 -51.93 -0.40 0.17 16 42 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.72 7.84 -51.93 -0.41 0.32 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.64 6.08 -51.93 -0.32 0.32 16 46 H 0.09 0.71 7.85 -51.93 -0.41 0.31 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.65 5.48 -51.93 -0.28 1.36 16 49 H 0.07 1.46 6.99 -51.93 -0.36 1.09 16 50 H 0.07 1.54 8.08 -51.93 -0.42 1.12 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -32.01 368.15 -11.25 -43.26 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.79 Total: 1.74 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.46 Total: 7.14 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.75 Total: -57.56 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.78 Total: -16.65 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.01 -11.25 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.418 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds