Wall clock time and date at job start Tue Mar 31 2020 18:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36941 * 119.99978 * 2 1 4 4 H 1.07995 * 120.00187 * 203.94674 * 3 2 1 5 5 C 1.38811 * 119.99740 * 23.95149 * 3 2 1 6 6 N 1.31620 * 120.00330 * 11.13718 * 5 3 2 7 7 Si 1.86807 * 120.00031 * 191.13893 * 5 3 2 8 8 H 1.48496 * 109.47034 * 59.99986 * 7 5 3 9 9 H 1.48496 * 109.47411 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46997 * 300.00347 * 7 5 3 11 11 C 1.46495 * 119.99970 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.88741 * 182.42335 * 11 2 1 13 13 C 1.55155 * 111.00660 * 58.54854 * 11 2 1 14 14 C 1.54317 * 102.94506 * 206.42307 * 13 11 2 15 15 N 1.47028 * 107.27028 * 22.19119 * 14 13 11 16 16 C 1.34769 * 125.64813 * 181.02477 * 15 14 13 17 17 O 1.21280 * 120.00321 * 184.97843 * 16 15 14 18 18 C 1.50703 * 120.00303 * 4.70321 * 16 15 14 19 19 H 1.09006 * 109.20228 * 51.16874 * 18 16 15 20 20 C 1.53290 * 109.20544 * 291.86631 * 18 16 15 21 21 N 1.46783 * 108.50110 * 299.77625 * 20 18 16 22 22 C 1.49430 * 112.10280 * 193.76454 * 21 20 18 23 23 C 1.57024 * 99.32485 * 113.45502 * 22 21 20 24 24 C 1.56483 * 107.13462 * 40.31951 * 23 22 21 25 25 C 1.49516 * 107.60889 * 302.19579 * 21 20 18 26 26 C 1.54375 * 104.43110 * 288.56796 * 25 21 20 27 27 C 1.50160 * 114.92667 * 57.52974 * 25 21 20 28 28 O 1.42794 * 109.20915 * 170.52566 * 18 16 15 29 29 C 1.47419 * 108.70033 * 1.28600 * 15 14 13 30 30 H 1.08996 * 109.47182 * 267.33291 * 1 2 3 31 31 H 1.08997 * 109.46697 * 27.33308 * 1 2 3 32 32 H 1.09000 * 109.47225 * 147.33168 * 1 2 3 33 33 H 0.96999 * 120.00231 * 179.97438 * 6 5 3 34 34 H 1.08995 * 110.72339 * 88.05441 * 13 11 2 35 35 H 1.09001 * 110.71748 * 324.78637 * 13 11 2 36 36 H 1.08999 * 109.88314 * 262.77425 * 14 13 11 37 37 H 1.09003 * 110.01624 * 141.67911 * 14 13 11 38 38 H 1.09003 * 109.63285 * 59.47882 * 20 18 16 39 39 H 1.08996 * 109.62982 * 180.02562 * 20 18 16 40 40 H 1.08996 * 111.42414 * 230.98283 * 22 21 20 41 41 H 1.08999 * 111.42814 * 355.87563 * 22 21 20 42 42 H 1.09004 * 118.34881 * 180.88658 * 23 22 21 43 43 H 1.08998 * 114.69658 * 190.07074 * 24 23 22 44 44 H 1.08994 * 114.69819 * 55.81718 * 24 23 22 45 45 H 1.09005 * 114.71904 * 45.65578 * 26 25 21 46 46 H 1.08994 * 114.72528 * 179.97438 * 26 25 21 47 47 H 1.09002 * 109.70010 * 187.22717 * 27 25 21 48 48 H 1.09000 * 109.70478 * 66.61446 * 27 25 21 49 49 H 1.09003 * 110.36426 * 94.48332 * 29 15 14 50 50 H 1.09000 * 110.36891 * 216.80384 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1600 1.2262 -0.3796 5 6 1.5453 2.3363 0.4880 6 7 0.4093 2.2537 1.1476 7 14 2.3441 4.0017 0.2086 8 1 2.4682 4.2527 -1.2497 9 1 1.5059 5.0622 0.8233 10 1 3.6930 4.0140 0.8296 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0965 0.0426 13 6 1.8211 -2.1277 -1.2366 14 6 2.0896 -3.5678 -0.7515 15 7 2.0420 -3.5494 0.7179 16 6 2.2463 -4.6102 1.5237 17 8 2.0936 -4.5000 2.7218 18 6 2.6584 -5.9351 0.9355 19 1 3.5166 -5.7851 0.2804 20 6 1.4950 -6.5075 0.1178 21 7 0.3451 -6.6934 1.0109 22 6 -0.7167 -7.5428 0.3910 23 6 -0.6299 -8.7912 1.3394 24 6 -0.4330 -8.2516 2.7950 25 6 0.7742 -7.6026 2.1176 26 6 0.9086 -8.9870 1.4479 27 6 1.9562 -7.1219 2.9091 28 8 3.0232 -6.8247 1.9912 29 6 1.7275 -2.1799 1.1635 30 1 -0.3633 -0.0478 1.0265 31 1 -0.3632 0.9129 -0.4719 32 1 -0.3634 -0.8651 -0.5547 33 1 -0.0129 3.0575 1.4890 34 1 2.4585 -1.8817 -2.0858 35 1 0.7695 -1.9964 -1.4916 36 1 3.0742 -3.8943 -1.0864 37 1 1.3245 -4.2407 -1.1387 38 1 1.2309 -5.8127 -0.6794 39 1 1.7857 -7.4666 -0.3107 40 1 -1.6943 -7.0646 0.4506 41 1 -0.4673 -7.8047 -0.6373 42 1 -1.2905 -9.6361 1.1447 43 1 -0.1854 -9.0138 3.5337 44 1 -1.1989 -7.5515 3.1286 45 1 1.4369 -8.9828 0.4944 46 1 1.2199 -9.7889 2.1172 47 1 2.2746 -7.8998 3.6031 48 1 1.6866 -6.2225 3.4627 49 1 0.6550 -2.0703 1.3248 50 1 2.2752 -1.9424 2.0755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971969524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:32 Heat of formation + Delta-G solvation = 24.805894 kcal Electronic energy + Delta-G solvation = -31044.342969 eV Core-core repulsion = 27074.797994 eV Total energy + Delta-G solvation = -3969.544975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.24212 -41.14154 -39.33101 -37.83298 -36.60501 -34.84617 -33.43701 -31.48974 -30.58448 -30.40350 -29.04337 -28.07343 -26.58710 -25.87357 -25.23947 -24.44316 -23.43809 -21.42740 -21.03341 -20.82553 -19.61671 -18.93900 -18.15508 -17.76301 -17.52438 -17.09203 -16.71416 -16.39106 -16.22346 -15.99973 -15.44375 -15.27528 -15.02932 -14.77593 -14.54761 -14.30583 -14.22977 -13.96471 -13.92095 -13.63196 -13.36126 -13.14367 -13.04065 -12.78035 -12.75216 -12.58143 -12.46153 -12.38092 -12.25026 -12.19952 -12.04621 -11.98662 -11.81872 -11.56870 -11.36836 -11.19482 -11.11290 -10.61856 -10.18651 -9.62208 -9.47727 -8.78393 -7.86359 -5.35326 1.47665 1.49601 1.56358 1.57289 1.91700 2.50897 2.59404 2.69016 3.26873 3.27238 3.35686 3.40734 3.51304 3.56197 3.58908 3.84883 3.91722 3.97327 4.06507 4.10805 4.20052 4.25487 4.35866 4.39939 4.45282 4.50294 4.57305 4.68198 4.72108 4.77079 4.81036 4.82255 4.85294 4.90102 4.91314 4.98220 5.04088 5.08431 5.18034 5.19492 5.26645 5.31243 5.44269 5.54086 5.61840 5.69060 5.83981 5.89624 6.31628 6.58522 7.11723 7.15134 7.82700 8.27824 9.18322 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.002726 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.119736 B =10270.422149 C =10385.291131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.600 5.600 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.053 4.053 6 N -0.940 5.940 7 Si 0.973 3.027 8 H -0.273 1.273 9 H -0.297 1.297 10 H -0.277 1.277 11 C 0.166 3.834 12 H 0.075 0.925 13 C -0.138 4.138 14 C 0.102 3.898 15 N -0.608 5.608 16 C 0.509 3.491 17 O -0.581 6.581 18 C 0.085 3.915 19 H 0.157 0.843 20 C 0.011 3.989 21 N -0.502 5.502 22 C 0.032 3.968 23 C -0.128 4.128 24 C -0.113 4.113 25 C 0.001 3.999 26 C -0.161 4.161 27 C 0.072 3.928 28 O -0.368 6.368 29 C 0.102 3.898 30 H -0.014 1.014 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.249 0.751 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.041 0.959 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -26.637 -6.578 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.321 5.321 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.198 1.198 9 H -0.224 1.224 10 H -0.203 1.203 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.178 4.178 14 C -0.020 4.020 15 N -0.342 5.342 16 C 0.299 3.701 17 O -0.462 6.462 18 C 0.024 3.976 19 H 0.174 0.826 20 C -0.118 4.118 21 N -0.226 5.226 22 C -0.095 4.095 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.089 4.089 26 C -0.199 4.199 27 C -0.004 4.004 28 O -0.285 6.285 29 C -0.023 4.023 30 H 0.005 0.995 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.124 0.876 47 H 0.133 0.867 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.684 -25.967 -5.684 26.591 hybrid contribution 0.063 1.019 0.411 1.101 sum 0.747 -24.948 -5.272 25.510 Atomic orbital electron populations 1.20464 0.82784 0.97022 0.96201 1.44025 1.01989 1.00922 1.85201 1.19587 0.99374 0.86528 1.34313 0.90536 1.25888 0.98534 1.02285 0.98064 1.70241 1.20345 1.28029 1.40004 0.85257 0.77520 0.79099 0.78027 1.19836 1.22352 1.20277 1.21676 0.95710 0.84593 0.92352 0.90644 1.23043 1.02887 0.93019 0.98815 1.22416 1.03592 0.98119 0.77873 1.48566 1.68870 1.08126 1.08670 1.21650 0.76266 0.85978 0.86180 1.90579 1.54005 1.84359 1.17232 1.22306 1.00444 0.85229 0.89667 0.82629 1.23233 0.89934 1.02709 0.95883 1.67208 1.08437 1.38964 1.08023 1.23923 0.96114 0.91587 0.97912 1.24840 0.97066 0.98461 0.94273 1.23418 0.95638 0.99456 0.96541 1.23449 0.97170 0.92150 0.96162 1.24486 0.96620 0.97223 1.01599 1.22146 0.85452 1.01279 0.91564 1.88089 1.36950 1.63545 1.39874 1.22605 0.98816 0.81972 0.98947 0.99529 0.94986 0.95164 0.94225 0.88283 0.91160 0.88124 0.89177 0.87031 0.89806 0.89706 0.89180 0.85102 0.86143 0.92363 0.91045 0.87579 0.86715 0.92132 0.94018 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 7.71 127.77 0.99 9.94 16 2 N -0.60 -29.66 2.96 -694.61 -2.05 -31.71 16 3 C -0.27 -14.53 9.60 84.03 0.81 -13.72 16 4 H 0.08 3.95 7.85 -2.91 -0.02 3.92 16 5 C -0.05 -2.94 5.09 84.86 0.43 -2.51 16 6 N -0.94 -56.40 10.71 21.65 0.23 -56.17 16 7 Si 0.97 44.95 29.57 68.60 2.03 46.98 16 8 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 9 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 C 0.17 6.52 3.56 46.46 0.17 6.69 16 12 H 0.08 2.99 7.96 -2.38 -0.02 2.97 16 13 C -0.14 -3.89 6.51 31.78 0.21 -3.68 16 14 C 0.10 2.25 5.97 86.73 0.52 2.77 16 15 N -0.61 -19.39 3.32 -811.38 -2.70 -22.08 16 16 C 0.51 16.95 6.58 87.66 0.58 17.52 16 17 O -0.58 -24.93 14.02 15.97 0.22 -24.70 16 18 C 0.09 2.00 3.10 29.95 0.09 2.09 16 19 H 0.16 2.66 8.01 -2.38 -0.02 2.64 16 20 C 0.01 0.20 4.77 86.42 0.41 0.61 16 21 N -0.50 -11.14 5.57 -875.12 -4.87 -16.01 16 22 C 0.03 0.51 7.02 87.22 0.61 1.12 16 23 C -0.13 -1.67 6.40 -15.57 -0.10 -1.77 16 24 C -0.11 -1.89 7.81 28.25 0.22 -1.67 16 25 C 0.00 0.02 1.59 -5.72 -0.01 0.01 16 26 C -0.16 -2.27 7.01 28.39 0.20 -2.07 16 27 C 0.07 1.84 6.16 71.07 0.44 2.28 16 28 O -0.37 -9.82 10.51 -129.98 -1.37 -11.18 16 29 C 0.10 4.19 6.45 86.93 0.56 4.75 16 30 H -0.01 -0.76 7.62 -2.39 -0.02 -0.78 16 31 H 0.03 1.72 6.82 -2.39 -0.02 1.70 16 32 H 0.03 1.28 6.30 -2.39 -0.02 1.26 16 33 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 2.11 6.28 -2.39 -0.01 2.09 16 36 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16 37 H 0.09 1.59 5.79 -2.39 -0.01 1.57 16 38 H 0.11 1.74 5.08 -2.39 -0.01 1.73 16 39 H 0.08 1.18 5.97 -2.39 -0.01 1.16 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.08 7.73 -2.39 -0.02 1.06 16 42 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.12 1.48 7.84 -2.39 -0.02 1.46 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.00 6.08 -2.38 -0.01 0.98 16 46 H 0.11 1.22 7.85 -2.39 -0.02 1.21 16 47 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.06 2.08 5.48 -2.39 -0.01 2.06 16 49 H 0.04 1.90 6.99 -2.39 -0.02 1.89 16 50 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 Total: -1.00 -75.02 368.15 -1.44 -76.46 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.95 Total: 16.08 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 6.12 Total: 22.35 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -9.39 Total: -125.98 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.14 Total: -35.89 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -75.02 -1.44 -76.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.266 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds