Wall clock time and date at job start Tue Mar 31 2020 18:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36929 * 120.00272 * 2 1 4 4 H 1.08004 * 120.00293 * 142.25822 * 3 2 1 5 5 C 1.38815 * 120.00224 * 322.25064 * 3 2 1 6 6 N 1.31613 * 120.00513 * 156.58357 * 5 3 2 7 7 Si 1.86801 * 119.99762 * 336.58601 * 5 3 2 8 8 H 1.48501 * 109.47512 * 94.80480 * 7 5 3 9 9 H 1.48500 * 109.47249 * 214.80991 * 7 5 3 10 10 H 1.48504 * 109.47366 * 334.80800 * 7 5 3 11 11 C 1.46502 * 119.99507 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88918 * 182.42761 * 11 2 1 13 13 C 1.55159 * 111.00835 * 58.54554 * 11 2 1 14 14 C 1.54317 * 102.94559 * 206.38311 * 13 11 2 15 15 N 1.47026 * 107.27041 * 22.19348 * 14 13 11 16 16 C 1.34772 * 125.64926 * 181.01927 * 15 14 13 17 17 O 1.21284 * 120.00257 * 4.36927 * 16 15 14 18 18 C 1.50699 * 120.00033 * 184.36874 * 16 15 14 19 19 H 1.09000 * 109.16146 * 303.27796 * 18 16 15 20 20 C 1.53284 * 109.20494 * 62.60928 * 18 16 15 21 21 N 1.46784 * 108.50550 * 60.22897 * 20 18 16 22 22 C 1.49422 * 112.10296 * 166.23924 * 21 20 18 23 23 C 1.57028 * 99.32557 * 246.54175 * 22 21 20 24 24 C 1.55460 * 101.36349 * 44.29646 * 23 22 21 25 25 C 1.49510 * 107.61086 * 57.80287 * 21 20 18 26 26 C 1.52886 * 111.06635 * 159.52530 * 25 21 20 27 27 C 1.50160 * 114.92653 * 302.47438 * 25 21 20 28 28 O 1.42801 * 109.20413 * 183.94975 * 18 16 15 29 29 C 1.47423 * 108.70280 * 1.28448 * 15 14 13 30 30 H 1.08998 * 109.47491 * 264.69227 * 1 2 3 31 31 H 1.09005 * 109.46844 * 24.69171 * 1 2 3 32 32 H 1.09000 * 109.47496 * 144.68925 * 1 2 3 33 33 H 0.96998 * 120.00490 * 180.02562 * 6 5 3 34 34 H 1.09008 * 110.71747 * 88.02002 * 13 11 2 35 35 H 1.09001 * 110.71831 * 324.75057 * 13 11 2 36 36 H 1.09001 * 109.88617 * 262.77644 * 14 13 11 37 37 H 1.09004 * 109.88218 * 141.60892 * 14 13 11 38 38 H 1.09006 * 109.62874 * 300.52349 * 20 18 16 39 39 H 1.09006 * 109.62967 * 179.97438 * 20 18 16 40 40 H 1.09000 * 111.42761 * 4.06867 * 22 21 20 41 41 H 1.09000 * 111.42480 * 129.01368 * 22 21 20 42 42 H 1.09000 * 118.87496 * 179.55393 * 23 22 21 43 43 H 1.08999 * 114.71897 * 183.08854 * 24 23 22 44 44 H 1.08999 * 114.71702 * 48.77840 * 24 23 22 45 45 H 1.09007 * 114.69352 * 52.51779 * 26 25 21 46 46 H 1.08996 * 114.69878 * 186.76318 * 26 25 21 47 47 H 1.09005 * 109.70245 * 172.77489 * 27 25 21 48 48 H 1.08997 * 109.70127 * 293.33383 * 27 25 21 49 49 H 1.09007 * 110.36662 * 94.48047 * 29 15 14 50 50 H 1.08999 * 110.36762 * 216.80342 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0603 1.2837 0.5725 5 6 1.6736 2.2622 -0.7360 6 7 2.0188 3.4888 -0.4066 7 14 0.5430 1.9698 -2.1939 8 1 -0.8708 2.0936 -1.7567 9 1 0.8249 2.9763 -3.2487 10 1 0.7759 0.6068 -2.7354 11 6 2.1974 -1.2688 0.0006 12 1 3.2729 -1.0967 0.0436 13 6 1.8209 -2.1290 -1.2347 14 6 2.0903 -3.5686 -0.7485 15 7 2.0432 -3.5491 0.7208 16 6 2.2482 -4.6092 1.5274 17 8 2.5743 -5.6772 1.0541 18 6 2.0724 -4.4675 3.0174 19 1 2.7223 -3.6712 3.3802 20 6 0.6141 -4.1060 3.3209 21 7 -0.2474 -5.1821 2.8165 22 6 -1.6400 -5.0837 3.3490 23 6 -1.6683 -6.3839 4.2291 24 6 -0.2886 -6.3020 4.9409 25 6 0.1813 -6.4524 3.4781 26 6 -0.9285 -7.5025 3.4228 27 6 1.6225 -6.8192 3.2701 28 8 2.4340 -5.6947 3.6518 29 6 1.7282 -2.1793 1.1656 30 1 -0.3634 -0.0951 1.0232 31 1 -0.3633 0.9338 -0.4293 32 1 -0.3634 -0.8386 -0.5940 33 1 1.6858 4.2410 -0.9206 34 1 2.4580 -1.8833 -2.0844 35 1 0.7691 -1.9984 -1.4894 36 1 3.0749 -3.8949 -1.0836 37 1 1.3235 -4.2400 -1.1352 38 1 0.3583 -3.1693 2.8254 39 1 0.4790 -4.0022 4.3976 40 1 -1.7717 -4.1885 3.9567 41 1 -2.3770 -5.1295 2.5472 42 1 -2.5739 -6.6224 4.7868 43 1 -0.0564 -7.1509 5.5839 44 1 -0.0662 -5.3359 5.3940 45 1 -1.3309 -7.6878 2.4268 46 1 -0.7238 -8.4117 3.9880 47 1 1.8751 -7.6812 3.8876 48 1 1.7933 -7.0569 2.2201 49 1 0.6557 -2.0701 1.3272 50 1 2.2762 -1.9410 2.0772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971969526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:36 Heat of formation + Delta-G solvation = 46.999060 kcal Electronic energy + Delta-G solvation = -31377.313969 eV Core-core repulsion = 27408.731362 eV Total energy + Delta-G solvation = -3968.582607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.47000 -40.00559 -38.15025 -36.71986 -34.97188 -33.96924 -31.87404 -30.83044 -29.63367 -29.03562 -28.16456 -26.28285 -25.86164 -24.86020 -24.25702 -23.20046 -22.12686 -20.67079 -19.89773 -19.49766 -18.60734 -17.25426 -17.01973 -16.76690 -16.24972 -16.08032 -15.87330 -15.34509 -15.10528 -14.65667 -14.57812 -14.10421 -13.67159 -13.47221 -13.36586 -13.25979 -13.15659 -12.93856 -12.77236 -12.49387 -12.28618 -12.16314 -12.07667 -11.89824 -11.72147 -11.47095 -11.35886 -11.20190 -10.96767 -10.89237 -10.74494 -10.58123 -10.50271 -10.28368 -10.17252 -10.00542 -9.69258 -9.17972 -8.71783 -8.62171 -8.37992 -6.96201 -6.10608 -3.53487 2.72409 3.09799 3.24654 3.41329 3.41933 3.45803 3.51966 3.92577 4.04887 4.24716 4.30620 4.41795 4.45964 4.65179 4.82145 4.85139 4.93303 5.04323 5.09536 5.19675 5.22253 5.24584 5.28201 5.35813 5.39351 5.44659 5.47233 5.49978 5.57220 5.58955 5.62714 5.69185 5.76885 5.80738 5.90245 5.94552 6.07014 6.10072 6.27226 6.31617 6.33820 6.50566 6.57318 6.59815 6.60892 6.74944 6.84982 7.71101 7.92824 8.25807 8.31182 8.84718 9.58453 9.97299 11.04426 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.003249 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.883338 B = 8615.119577 C = 9079.031082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.594 5.594 3 C -0.277 4.277 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.895 5.895 7 Si 0.879 3.121 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.267 1.267 11 C 0.172 3.828 12 H 0.089 0.911 13 C -0.157 4.157 14 C 0.114 3.886 15 N -0.606 5.606 16 C 0.521 3.479 17 O -0.540 6.540 18 C 0.081 3.919 19 H 0.130 0.870 20 C 0.005 3.995 21 N -0.468 5.468 22 C 0.035 3.965 23 C -0.143 4.143 24 C -0.176 4.176 25 C 0.016 3.984 26 C -0.110 4.110 27 C 0.076 3.924 28 O -0.354 6.354 29 C 0.078 3.922 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -19.543 9.024 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.316 5.316 3 C -0.406 4.406 4 H 0.099 0.901 5 C -0.162 4.162 6 N -0.535 5.535 7 Si 0.708 3.292 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.192 1.192 11 C 0.063 3.937 12 H 0.107 0.893 13 C -0.197 4.197 14 C -0.009 4.009 15 N -0.341 5.341 16 C 0.309 3.691 17 O -0.418 6.418 18 C 0.019 3.981 19 H 0.148 0.852 20 C -0.123 4.123 21 N -0.191 5.191 22 C -0.092 4.092 23 C -0.162 4.162 24 C -0.214 4.214 25 C -0.074 4.074 26 C -0.148 4.148 27 C 0.000 4.000 28 O -0.271 6.271 29 C -0.047 4.047 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.089 0.911 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.042 -19.916 8.279 22.398 hybrid contribution -1.041 0.239 -0.098 1.072 sum -7.082 -19.677 8.181 22.456 Atomic orbital electron populations 1.21350 0.84698 0.99574 0.98122 1.43966 1.00536 1.01272 1.85831 1.18771 1.10087 0.86691 1.25002 0.90122 1.25474 0.97991 0.95133 0.97576 1.69872 1.46474 0.97904 1.39261 0.86928 0.80000 0.78025 0.84201 1.21418 1.22865 1.19197 1.21636 0.96985 0.85153 0.89945 0.89274 1.23264 1.02643 0.93071 1.00725 1.21874 1.01241 0.98011 0.79762 1.48442 1.69113 1.09320 1.07251 1.20713 0.76597 0.83059 0.88712 1.90584 1.48036 1.26640 1.76562 1.22085 0.96475 0.89130 0.90376 0.85248 1.23202 0.92079 0.96849 1.00210 1.67233 1.02038 1.00903 1.48976 1.23834 0.91522 0.96369 0.97506 1.24879 0.97199 0.95799 0.98277 1.24557 0.97072 1.02710 0.97092 1.23411 0.96340 0.93999 0.93684 1.23292 0.95236 0.95229 1.01026 1.22103 0.85775 0.88409 1.03756 1.88140 1.57172 1.16224 1.65586 1.23088 1.00709 0.80841 1.00071 0.96521 0.93034 0.95145 0.92530 0.90294 0.90892 0.91796 0.92144 0.87858 0.91924 0.90876 0.88992 0.87421 0.88931 0.91102 0.90525 0.88159 0.88491 0.88649 0.91102 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.14 8.16 59.85 0.49 2.63 16 2 N -0.59 -12.87 2.51 -170.89 -0.43 -13.30 16 3 C -0.28 -7.25 9.85 -15.06 -0.15 -7.40 16 4 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 5 C 0.04 1.09 5.25 -17.43 -0.09 1.00 16 6 N -0.89 -26.22 13.97 55.49 0.78 -25.44 16 7 Si 0.88 21.18 25.16 -169.99 -4.28 16.90 16 8 H -0.29 -6.72 6.64 56.52 0.38 -6.34 16 9 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.17 3.08 3.56 -65.66 -0.23 2.84 16 12 H 0.09 1.65 7.96 -51.93 -0.41 1.24 16 13 C -0.16 -2.54 6.52 -24.90 -0.16 -2.70 16 14 C 0.11 1.72 6.87 -3.07 -0.02 1.70 16 15 N -0.61 -9.20 3.32 -170.38 -0.57 -9.76 16 16 C 0.52 8.19 6.54 -10.99 -0.07 8.11 16 17 O -0.54 -9.97 14.24 -14.48 -0.21 -10.17 16 18 C 0.08 1.07 3.05 -27.74 -0.08 0.98 16 19 H 0.13 1.50 7.62 -51.93 -0.40 1.10 16 20 C 0.01 0.06 4.76 -3.74 -0.02 0.05 16 21 N -0.47 -5.56 5.57 -227.96 -1.27 -6.83 16 22 C 0.04 0.34 7.02 -0.23 0.00 0.34 16 23 C -0.14 -1.16 6.40 -97.99 -0.63 -1.79 16 24 C -0.18 -1.57 7.01 -30.14 -0.21 -1.79 16 25 C 0.02 0.17 1.59 -143.63 -0.23 -0.06 16 26 C -0.11 -0.95 7.81 -30.35 -0.24 -1.19 16 27 C 0.08 0.94 6.16 35.74 0.22 1.16 16 28 O -0.35 -4.92 10.47 -55.26 -0.58 -5.50 16 29 C 0.08 1.16 4.95 -2.41 -0.01 1.15 16 30 H 0.02 0.31 7.90 -51.93 -0.41 -0.10 16 31 H 0.05 1.14 3.64 -51.93 -0.19 0.95 16 32 H 0.03 0.54 6.29 -51.93 -0.33 0.22 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.07 1.22 6.27 -51.93 -0.33 0.89 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.21 5.42 -51.93 -0.28 0.93 16 39 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 40 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 44 H 0.07 0.69 6.08 -51.93 -0.32 0.37 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.10 0.68 7.84 -51.93 -0.41 0.27 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.10 1.42 5.65 -51.93 -0.29 1.13 16 49 H 0.07 1.06 5.76 -51.92 -0.30 0.76 16 50 H 0.07 1.00 7.40 -51.93 -0.38 0.62 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -31.03 364.32 -10.20 -41.23 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.70 Total: 2.34 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.44 Total: 5.03 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -1.49 Total: -55.33 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.78 Total: -15.67 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.28 Total: 16.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.03 -10.20 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.230 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds