Wall clock time and date at job start Tue Mar 31 2020 18:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36929 * 120.00272 * 2 1 4 4 H 1.08004 * 120.00293 * 142.25822 * 3 2 1 5 5 C 1.38815 * 120.00224 * 322.25064 * 3 2 1 6 6 N 1.31613 * 120.00513 * 156.58357 * 5 3 2 7 7 Si 1.86801 * 119.99762 * 336.58601 * 5 3 2 8 8 H 1.48501 * 109.47512 * 94.80480 * 7 5 3 9 9 H 1.48500 * 109.47249 * 214.80991 * 7 5 3 10 10 H 1.48504 * 109.47366 * 334.80800 * 7 5 3 11 11 C 1.46502 * 119.99507 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88918 * 182.42761 * 11 2 1 13 13 C 1.55159 * 111.00835 * 58.54554 * 11 2 1 14 14 C 1.54317 * 102.94559 * 206.38311 * 13 11 2 15 15 N 1.47026 * 107.27041 * 22.19348 * 14 13 11 16 16 C 1.34772 * 125.64926 * 181.01927 * 15 14 13 17 17 O 1.21284 * 120.00257 * 4.36927 * 16 15 14 18 18 C 1.50699 * 120.00033 * 184.36874 * 16 15 14 19 19 H 1.09000 * 109.16146 * 303.27796 * 18 16 15 20 20 C 1.53284 * 109.20494 * 62.60928 * 18 16 15 21 21 N 1.46784 * 108.50550 * 60.22897 * 20 18 16 22 22 C 1.49422 * 112.10296 * 166.23924 * 21 20 18 23 23 C 1.57028 * 99.32557 * 246.54175 * 22 21 20 24 24 C 1.55460 * 101.36349 * 44.29646 * 23 22 21 25 25 C 1.49510 * 107.61086 * 57.80287 * 21 20 18 26 26 C 1.52886 * 111.06635 * 159.52530 * 25 21 20 27 27 C 1.50160 * 114.92653 * 302.47438 * 25 21 20 28 28 O 1.42801 * 109.20413 * 183.94975 * 18 16 15 29 29 C 1.47423 * 108.70280 * 1.28448 * 15 14 13 30 30 H 1.08998 * 109.47491 * 264.69227 * 1 2 3 31 31 H 1.09005 * 109.46844 * 24.69171 * 1 2 3 32 32 H 1.09000 * 109.47496 * 144.68925 * 1 2 3 33 33 H 0.96998 * 120.00490 * 180.02562 * 6 5 3 34 34 H 1.09008 * 110.71747 * 88.02002 * 13 11 2 35 35 H 1.09001 * 110.71831 * 324.75057 * 13 11 2 36 36 H 1.09001 * 109.88617 * 262.77644 * 14 13 11 37 37 H 1.09004 * 109.88218 * 141.60892 * 14 13 11 38 38 H 1.09006 * 109.62874 * 300.52349 * 20 18 16 39 39 H 1.09006 * 109.62967 * 179.97438 * 20 18 16 40 40 H 1.09000 * 111.42761 * 4.06867 * 22 21 20 41 41 H 1.09000 * 111.42480 * 129.01368 * 22 21 20 42 42 H 1.09000 * 118.87496 * 179.55393 * 23 22 21 43 43 H 1.08999 * 114.71897 * 183.08854 * 24 23 22 44 44 H 1.08999 * 114.71702 * 48.77840 * 24 23 22 45 45 H 1.09007 * 114.69352 * 52.51779 * 26 25 21 46 46 H 1.08996 * 114.69878 * 186.76318 * 26 25 21 47 47 H 1.09005 * 109.70245 * 172.77489 * 27 25 21 48 48 H 1.08997 * 109.70127 * 293.33383 * 27 25 21 49 49 H 1.09007 * 110.36662 * 94.48047 * 29 15 14 50 50 H 1.08999 * 110.36762 * 216.80342 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0603 1.2837 0.5725 5 6 1.6736 2.2622 -0.7360 6 7 2.0188 3.4888 -0.4066 7 14 0.5430 1.9698 -2.1939 8 1 -0.8708 2.0936 -1.7567 9 1 0.8249 2.9763 -3.2487 10 1 0.7759 0.6068 -2.7354 11 6 2.1974 -1.2688 0.0006 12 1 3.2729 -1.0967 0.0436 13 6 1.8209 -2.1290 -1.2347 14 6 2.0903 -3.5686 -0.7485 15 7 2.0432 -3.5491 0.7208 16 6 2.2482 -4.6092 1.5274 17 8 2.5743 -5.6772 1.0541 18 6 2.0724 -4.4675 3.0174 19 1 2.7223 -3.6712 3.3802 20 6 0.6141 -4.1060 3.3209 21 7 -0.2474 -5.1821 2.8165 22 6 -1.6400 -5.0837 3.3490 23 6 -1.6683 -6.3839 4.2291 24 6 -0.2886 -6.3020 4.9409 25 6 0.1813 -6.4524 3.4781 26 6 -0.9285 -7.5025 3.4228 27 6 1.6225 -6.8192 3.2701 28 8 2.4340 -5.6947 3.6518 29 6 1.7282 -2.1793 1.1656 30 1 -0.3634 -0.0951 1.0232 31 1 -0.3633 0.9338 -0.4293 32 1 -0.3634 -0.8386 -0.5940 33 1 1.6858 4.2410 -0.9206 34 1 2.4580 -1.8833 -2.0844 35 1 0.7691 -1.9984 -1.4894 36 1 3.0749 -3.8949 -1.0836 37 1 1.3235 -4.2400 -1.1352 38 1 0.3583 -3.1693 2.8254 39 1 0.4790 -4.0022 4.3976 40 1 -1.7717 -4.1885 3.9567 41 1 -2.3770 -5.1295 2.5472 42 1 -2.5739 -6.6224 4.7868 43 1 -0.0564 -7.1509 5.5839 44 1 -0.0662 -5.3359 5.3940 45 1 -1.3309 -7.6878 2.4268 46 1 -0.7238 -8.4117 3.9880 47 1 1.8751 -7.6812 3.8876 48 1 1.7933 -7.0569 2.2201 49 1 0.6557 -2.0701 1.3272 50 1 2.2762 -1.9410 2.0772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971969526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:35 Heat of formation + Delta-G solvation = 25.595217 kcal Electronic energy + Delta-G solvation = -31378.242109 eV Core-core repulsion = 27408.731362 eV Total energy + Delta-G solvation = -3969.510748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.25620 -41.19008 -39.40721 -37.92316 -36.56446 -34.88963 -33.73431 -32.12774 -30.46661 -30.14280 -29.45270 -28.04130 -26.60272 -25.82995 -25.41273 -24.57517 -23.36602 -21.41370 -21.07595 -20.82824 -19.63753 -18.99713 -18.22855 -17.80453 -17.55840 -17.23795 -16.76471 -16.63536 -16.43130 -15.80384 -15.46118 -15.37054 -15.05700 -14.83903 -14.62925 -14.45165 -14.38846 -14.17531 -14.06718 -13.75574 -13.64987 -13.40834 -13.15689 -12.92682 -12.78246 -12.51655 -12.45567 -12.41313 -12.33247 -12.23295 -12.05686 -12.00253 -11.62918 -11.58749 -11.45391 -11.20697 -11.13611 -10.64763 -10.23815 -9.67435 -9.53778 -8.76962 -8.20001 -5.58703 1.33746 1.45835 1.52583 1.55821 1.89073 2.43528 2.57086 2.65885 3.03445 3.17153 3.26347 3.34303 3.48291 3.53430 3.56668 3.78984 3.85822 3.86837 4.03072 4.04353 4.13998 4.28084 4.31685 4.35922 4.39462 4.51314 4.56380 4.58725 4.65821 4.70594 4.72192 4.79636 4.80916 4.83152 4.85962 4.89749 4.96716 4.97969 5.04516 5.07710 5.16743 5.18023 5.25110 5.32880 5.51671 5.79332 5.87181 5.92815 6.19268 6.48350 6.96111 7.08582 7.60609 8.02408 8.99304 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.003249 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.883338 B = 8615.119577 C = 9079.031082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.604 5.604 3 C -0.262 4.262 4 H 0.047 0.953 5 C -0.015 4.015 6 N -0.946 5.946 7 Si 0.940 3.060 8 H -0.274 1.274 9 H -0.313 1.313 10 H -0.254 1.254 11 C 0.165 3.835 12 H 0.076 0.924 13 C -0.146 4.146 14 C 0.119 3.881 15 N -0.606 5.606 16 C 0.518 3.482 17 O -0.571 6.571 18 C 0.081 3.919 19 H 0.144 0.856 20 C 0.013 3.987 21 N -0.493 5.493 22 C 0.031 3.969 23 C -0.129 4.129 24 C -0.167 4.167 25 C 0.001 3.999 26 C -0.106 4.106 27 C 0.075 3.925 28 O -0.367 6.367 29 C 0.092 3.908 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 -21.577 9.915 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.327 5.327 3 C -0.392 4.392 4 H 0.065 0.935 5 C -0.212 4.212 6 N -0.589 5.589 7 Si 0.769 3.231 8 H -0.201 1.201 9 H -0.242 1.242 10 H -0.178 1.178 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.186 4.186 14 C -0.004 4.004 15 N -0.340 5.340 16 C 0.308 3.692 17 O -0.451 6.451 18 C 0.019 3.981 19 H 0.161 0.839 20 C -0.116 4.116 21 N -0.217 5.217 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.206 4.206 25 C -0.090 4.090 26 C -0.143 4.143 27 C -0.001 4.001 28 O -0.284 6.284 29 C -0.032 4.032 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.148 0.852 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.135 0.865 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.010 -21.998 9.176 25.145 hybrid contribution -0.348 0.785 -0.329 0.919 sum -8.357 -21.213 8.848 24.456 Atomic orbital electron populations 1.21411 0.83377 0.99521 0.99579 1.43964 1.01361 1.01059 1.86281 1.18667 1.08861 0.88341 1.23291 0.93493 1.26056 1.00399 0.94784 0.99986 1.69994 1.49286 0.98864 1.40759 0.85930 0.78781 0.77935 0.80499 1.20136 1.24183 1.17785 1.21685 0.96124 0.84317 0.92220 0.90568 1.23127 1.02642 0.93031 0.99756 1.21808 1.01396 0.97284 0.79885 1.48461 1.68948 1.09316 1.07268 1.21245 0.75695 0.82457 0.89806 1.90580 1.49413 1.27773 1.77368 1.22218 0.98070 0.89425 0.88368 0.83926 1.23117 0.90856 0.96742 1.00872 1.67204 1.03166 1.01346 1.50003 1.23907 0.90234 0.97596 0.97882 1.24843 0.97653 0.94659 0.97602 1.24532 0.97191 1.02951 0.95894 1.23501 0.95720 0.94460 0.95272 1.23394 0.94148 0.95790 1.01002 1.22140 0.87032 0.88657 1.02314 1.88111 1.58055 1.16777 1.65490 1.22898 1.01250 0.79899 0.99136 0.94738 0.95061 0.92538 0.92769 0.90282 0.90674 0.91827 0.91751 0.88049 0.90708 0.90158 0.89126 0.85218 0.87396 0.91835 0.91649 0.85984 0.86478 0.91730 0.90244 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.94 8.16 127.77 1.04 4.98 16 2 N -0.60 -25.40 2.51 -694.58 -1.74 -27.15 16 3 C -0.26 -13.81 9.85 84.04 0.83 -12.99 16 4 H 0.05 2.75 8.06 -2.91 -0.02 2.72 16 5 C -0.02 -0.84 5.25 84.86 0.45 -0.39 16 6 N -0.95 -56.79 13.97 21.65 0.30 -56.49 16 7 Si 0.94 43.63 25.16 68.60 1.73 45.36 16 8 H -0.27 -12.10 6.64 99.48 0.66 -11.44 16 9 H -0.31 -15.04 7.11 99.48 0.71 -14.34 16 10 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 11 C 0.16 5.67 3.56 46.46 0.17 5.84 16 12 H 0.08 2.81 7.96 -2.39 -0.02 2.80 16 13 C -0.15 -4.43 6.52 31.78 0.21 -4.22 16 14 C 0.12 3.42 6.87 86.73 0.60 4.01 16 15 N -0.61 -17.49 3.32 -811.35 -2.69 -20.18 16 16 C 0.52 15.81 6.54 87.66 0.57 16.39 16 17 O -0.57 -21.02 14.24 16.11 0.23 -20.79 16 18 C 0.08 2.01 3.05 29.94 0.09 2.10 16 19 H 0.14 3.07 7.62 -2.39 -0.02 3.05 16 20 C 0.01 0.27 4.76 86.42 0.41 0.69 16 21 N -0.49 -10.79 5.57 -875.12 -4.87 -15.67 16 22 C 0.03 0.52 7.02 87.23 0.61 1.13 16 23 C -0.13 -1.68 6.40 -15.57 -0.10 -1.78 16 24 C -0.17 -2.48 7.01 28.38 0.20 -2.29 16 25 C 0.00 0.01 1.59 -5.72 -0.01 0.00 16 26 C -0.11 -1.55 7.81 28.25 0.22 -1.33 16 27 C 0.07 1.76 6.16 71.07 0.44 2.20 16 28 O -0.37 -9.79 10.47 -129.83 -1.36 -11.15 16 29 C 0.09 2.59 4.95 86.93 0.43 3.02 16 30 H 0.03 1.18 7.90 -2.39 -0.02 1.16 16 31 H 0.03 1.31 3.64 -2.38 -0.01 1.30 16 32 H 0.06 1.82 6.29 -2.39 -0.02 1.81 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.07 2.28 6.27 -2.39 -0.01 2.26 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 2.14 5.42 -2.38 -0.01 2.13 16 39 H 0.07 1.39 5.97 -2.38 -0.01 1.38 16 40 H 0.08 1.20 7.73 -2.39 -0.02 1.18 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 1.28 7.85 -2.39 -0.02 1.26 16 44 H 0.06 1.05 6.08 -2.39 -0.01 1.04 16 45 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.12 1.23 7.84 -2.39 -0.02 1.22 16 47 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.06 1.94 5.65 -2.39 -0.01 1.92 16 49 H 0.08 2.15 5.76 -2.38 -0.01 2.13 16 50 H 0.08 2.18 7.40 -2.39 -0.02 2.17 16 Total: -1.00 -67.82 364.32 -1.35 -69.17 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.91 Total: 19.53 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.15 Total: 17.36 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -9.00 Total: -119.48 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.13 Total: -31.94 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.73 Total: 45.36 kcal Total: -67.82 -1.35 -69.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.763 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds