Wall clock time and date at job start Tue Mar 31 2020 18:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36931 * 119.99866 * 2 1 4 4 H 1.08004 * 119.99747 * 203.78487 * 3 2 1 5 5 C 1.38813 * 120.00252 * 23.77900 * 3 2 1 6 6 N 1.31619 * 119.99998 * 11.03586 * 5 3 2 7 7 Si 1.86800 * 119.99901 * 191.03996 * 5 3 2 8 8 H 1.48502 * 109.47136 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47498 * 119.99690 * 7 5 3 10 10 H 1.48508 * 109.46984 * 239.99918 * 7 5 3 11 11 C 1.46501 * 120.00062 * 179.97438 * 2 1 3 12 12 H 1.08993 * 110.78044 * 183.24122 * 11 2 1 13 13 C 1.55155 * 110.72262 * 306.48161 * 11 2 1 14 14 C 1.54911 * 101.58431 * 153.86175 * 13 11 2 15 15 N 1.47427 * 104.82800 * 322.99034 * 14 13 11 16 16 C 1.34777 * 125.64420 * 204.16097 * 15 14 13 17 17 O 1.21287 * 119.99861 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00223 * 359.96055 * 16 15 14 19 19 H 1.08995 * 109.20162 * 55.64694 * 18 16 15 20 20 C 1.53290 * 109.20384 * 296.33837 * 18 16 15 21 21 N 1.46782 * 108.50580 * 299.77730 * 20 18 16 22 22 C 1.49419 * 112.10241 * 193.76418 * 21 20 18 23 23 C 1.57021 * 99.32559 * 113.45575 * 22 21 20 24 24 C 1.56485 * 107.13486 * 40.31908 * 23 22 21 25 25 C 1.49517 * 107.61202 * 302.19694 * 21 20 18 26 26 C 1.54369 * 104.42585 * 288.57025 * 25 21 20 27 27 C 1.50167 * 114.92373 * 57.52719 * 25 21 20 28 28 O 1.42805 * 109.20368 * 175.00355 * 18 16 15 29 29 C 1.47023 * 108.70548 * 24.12721 * 15 14 13 30 30 H 1.09000 * 109.46714 * 274.79298 * 1 2 3 31 31 H 1.08997 * 109.46983 * 34.79063 * 1 2 3 32 32 H 1.09003 * 109.46977 * 154.79351 * 1 2 3 33 33 H 0.96999 * 119.99619 * 179.97438 * 6 5 3 34 34 H 1.09000 * 111.00659 * 35.78801 * 13 11 2 35 35 H 1.08996 * 111.03580 * 271.95075 * 13 11 2 36 36 H 1.09001 * 110.36905 * 204.15304 * 14 13 11 37 37 H 1.08996 * 110.45687 * 81.87523 * 14 13 11 38 38 H 1.08998 * 109.62944 * 59.48142 * 20 18 16 39 39 H 1.08996 * 109.62773 * 180.02562 * 20 18 16 40 40 H 1.09001 * 111.42963 * 230.97973 * 22 21 20 41 41 H 1.08995 * 111.43250 * 355.87167 * 22 21 20 42 42 H 1.09001 * 118.35405 * 180.88582 * 23 22 21 43 43 H 1.09004 * 114.69961 * 190.06843 * 24 23 22 44 44 H 1.09006 * 114.69601 * 55.82027 * 24 23 22 45 45 H 1.08999 * 114.72531 * 45.66218 * 26 25 21 46 46 H 1.09005 * 114.71693 * 179.97438 * 26 25 21 47 47 H 1.08996 * 109.69699 * 187.22583 * 27 25 21 48 48 H 1.09003 * 109.70680 * 66.62002 * 27 25 21 49 49 H 1.09004 * 109.87828 * 118.35600 * 29 15 14 50 50 H 1.09001 * 109.87763 * 239.51931 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2256 -0.3772 5 6 1.5440 2.3370 0.4847 6 7 0.4053 2.2557 1.1397 7 14 2.3451 4.0016 0.2072 8 1 3.6097 3.8222 -0.5504 9 1 1.4234 4.8718 -0.5663 10 1 2.6395 4.6340 1.5183 11 6 2.1976 -1.2687 0.0006 12 1 3.2720 -1.0949 0.0581 13 6 1.7249 -2.1751 1.1678 14 6 2.0499 -3.5861 0.6173 15 7 1.7501 -3.5071 -0.8240 16 6 1.4393 -4.5494 -1.6199 17 8 1.2098 -4.3665 -2.7968 18 6 1.3772 -5.9422 -1.0477 19 1 0.6796 -5.9549 -0.2104 20 6 2.7696 -6.3450 -0.5490 21 7 3.6987 -6.3125 -1.6849 22 6 4.9895 -6.9984 -1.3752 23 6 4.8764 -8.2125 -2.3645 24 6 4.2722 -7.6643 -3.6999 25 6 3.1691 -7.2423 -2.7292 26 6 3.4016 -8.6514 -2.1432 27 6 1.7785 -6.9338 -3.2047 28 8 0.9182 -6.8439 -2.0554 29 6 1.8455 -2.1029 -1.2492 30 1 -0.3633 0.0859 1.0241 31 1 -0.3633 0.8439 -0.5863 32 1 -0.3633 -0.9298 -0.4377 33 1 -0.0177 3.0601 1.4787 34 1 0.6551 -2.0608 1.3426 35 1 2.2912 -1.9702 2.0763 36 1 1.4184 -4.3347 1.0956 37 1 3.1024 -3.8228 0.7734 38 1 3.1018 -5.6431 0.2159 39 1 2.7326 -7.3521 -0.1339 40 1 5.8442 -6.3664 -1.6165 41 1 5.0249 -7.3309 -0.3378 42 1 5.6834 -8.9450 -2.3794 43 1 3.9794 -8.4319 -4.4162 44 1 4.8270 -6.8387 -4.1457 45 1 3.1114 -8.7643 -1.0987 46 1 3.0693 -9.4707 -2.7808 47 1 1.4303 -7.7297 -3.8630 48 1 1.7755 -5.9849 -3.7411 49 1 2.6288 -1.9952 -1.9995 50 1 0.8901 -1.7736 -1.6577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971969527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:39 Heat of formation + Delta-G solvation = 44.721005 kcal Electronic energy + Delta-G solvation = -31046.795071 eV Core-core repulsion = 27078.113680 eV Total energy + Delta-G solvation = -3968.681391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.48299 -39.92095 -38.03992 -36.57998 -34.89949 -33.91118 -31.66454 -30.03396 -29.61997 -29.45012 -27.65527 -26.03939 -25.84590 -24.82490 -24.21448 -22.90018 -22.21347 -20.70493 -19.99526 -19.18822 -18.58269 -17.23868 -16.90498 -16.73402 -16.23143 -15.91677 -15.79393 -15.30481 -14.90239 -14.65289 -14.33194 -13.98000 -13.60819 -13.47806 -13.36035 -13.27449 -13.02995 -12.64072 -12.39952 -12.35589 -12.14937 -12.09962 -11.81496 -11.71782 -11.43722 -11.39797 -11.15822 -10.93714 -10.78700 -10.74747 -10.56399 -10.51414 -10.46172 -10.22743 -10.19428 -9.88001 -9.85311 -9.13563 -8.68699 -8.57891 -8.25518 -6.80046 -5.76083 -3.24345 2.81089 3.18340 3.36521 3.40505 3.44251 3.46109 3.52778 3.90549 4.03463 4.23473 4.29019 4.45977 4.50948 4.65714 4.80216 4.82599 4.99595 5.04415 5.13337 5.24107 5.26224 5.30318 5.35865 5.38996 5.41865 5.47742 5.53618 5.56002 5.57389 5.59983 5.68400 5.78566 5.80042 5.92096 5.97703 6.02552 6.26202 6.35274 6.41895 6.55122 6.58813 6.67838 6.81138 6.86112 6.89075 7.37000 7.70853 7.78737 7.83841 8.35320 8.42199 9.19488 9.81491 10.30624 11.28538 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.002736 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.581223 B =10230.063691 C =10486.519270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.150 4.150 14 C 0.097 3.903 15 N -0.605 5.605 16 C 0.517 3.483 17 O -0.536 6.536 18 C 0.080 3.920 19 H 0.127 0.873 20 C 0.006 3.994 21 N -0.467 5.467 22 C 0.035 3.965 23 C -0.143 4.143 24 C -0.109 4.109 25 C 0.017 3.983 26 C -0.176 4.176 27 C 0.075 3.925 28 O -0.355 6.355 29 C 0.089 3.911 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.000 1.000 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -23.467 -2.678 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.190 4.190 14 C -0.026 4.026 15 N -0.340 5.340 16 C 0.305 3.695 17 O -0.414 6.414 18 C 0.018 3.982 19 H 0.145 0.855 20 C -0.123 4.123 21 N -0.190 5.190 22 C -0.093 4.093 23 C -0.162 4.162 24 C -0.147 4.147 25 C -0.073 4.073 26 C -0.214 4.214 27 C -0.002 4.002 28 O -0.272 6.272 29 C -0.035 4.035 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.500 -22.716 -3.418 23.873 hybrid contribution 0.455 0.179 0.427 0.649 sum 6.955 -22.537 -2.991 23.774 Atomic orbital electron populations 1.20788 0.82438 0.95615 0.99476 1.43864 1.01869 0.99898 1.85065 1.19269 0.98867 0.85526 1.35197 0.91227 1.25054 0.97703 0.98650 0.97988 1.70072 1.18606 1.27306 1.39027 0.86160 0.78711 0.84114 0.77394 1.20247 1.21590 1.21703 1.21292 0.96370 0.85996 0.90010 0.90364 1.23361 1.02808 0.92712 1.00147 1.22437 0.99832 0.99463 0.80869 1.48478 1.67856 1.07789 1.09839 1.20678 0.76655 0.85847 0.86336 1.90596 1.50168 1.84707 1.15918 1.22081 0.96380 0.87681 0.92015 0.85520 1.23196 0.92197 1.02075 0.94818 1.67239 1.02553 1.42207 1.07045 1.23845 0.93724 0.93658 0.98074 1.24879 0.96779 0.98207 0.96346 1.23285 0.96088 1.00705 0.94622 1.23403 0.96505 0.91106 0.96291 1.24558 0.96763 0.98348 1.01748 1.22132 0.85595 1.04239 0.88199 1.88130 1.48362 1.61442 1.29274 1.22773 1.01938 0.79148 0.99667 0.94921 0.93877 0.98153 0.93738 0.90523 0.90361 0.91600 0.91511 0.88103 0.92097 0.88941 0.91037 0.87440 0.88118 0.90394 0.91219 0.88925 0.88474 0.88385 0.92213 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.45 59.85 0.45 4.37 16 2 N -0.59 -14.27 2.93 -171.39 -0.50 -14.77 16 3 C -0.26 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 5 C 0.00 0.13 5.14 -17.43 -0.09 0.04 16 6 N -0.91 -25.91 10.65 55.49 0.59 -25.32 16 7 Si 0.91 21.59 29.57 -169.99 -5.03 16.57 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.17 3.41 3.43 -66.10 -0.23 3.18 16 12 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 13 C -0.15 -2.43 6.62 -24.58 -0.16 -2.60 16 14 C 0.10 1.26 5.27 -2.53 -0.01 1.24 16 15 N -0.60 -9.68 3.32 -170.51 -0.57 -10.25 16 16 C 0.52 8.50 6.56 -10.98 -0.07 8.42 16 17 O -0.54 -10.72 14.19 -14.46 -0.21 -10.92 16 18 C 0.08 1.03 3.02 -27.73 -0.08 0.94 16 19 H 0.13 1.35 7.63 -51.93 -0.40 0.96 16 20 C 0.01 0.06 4.75 -3.74 -0.02 0.05 16 21 N -0.47 -5.36 5.57 -228.00 -1.27 -6.62 16 22 C 0.03 0.31 7.02 -0.24 0.00 0.30 16 23 C -0.14 -1.11 6.40 -98.02 -0.63 -1.74 16 24 C -0.11 -0.94 7.81 -30.36 -0.24 -1.18 16 25 C 0.02 0.18 1.59 -143.66 -0.23 -0.04 16 26 C -0.18 -1.49 7.01 -30.15 -0.21 -1.71 16 27 C 0.07 0.94 6.16 35.75 0.22 1.16 16 28 O -0.36 -4.93 10.48 -55.24 -0.58 -5.51 16 29 C 0.09 1.68 6.39 -3.06 -0.02 1.66 16 30 H 0.03 0.85 7.35 -51.93 -0.38 0.47 16 31 H 0.04 1.14 7.32 -51.93 -0.38 0.76 16 32 H 0.00 0.00 6.59 -51.93 -0.34 -0.34 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 1.36 7.08 -51.93 -0.37 0.99 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.68 7.34 -51.93 -0.38 0.30 16 37 H 0.07 0.76 7.10 -51.93 -0.37 0.39 16 38 H 0.10 0.97 5.39 -51.93 -0.28 0.69 16 39 H 0.06 0.56 5.97 -51.93 -0.31 0.25 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.55 7.73 -51.93 -0.40 0.14 16 42 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.68 7.85 -51.93 -0.41 0.28 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.62 6.08 -51.93 -0.32 0.31 16 46 H 0.09 0.69 7.85 -51.93 -0.41 0.28 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.10 1.53 5.61 -51.93 -0.29 1.24 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.07 1.49 6.47 -51.93 -0.34 1.15 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -31.97 368.60 -11.34 -43.30 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.86 Total: 0.97 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.47 Total: 7.00 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -1.75 Total: -56.97 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.78 Total: -16.43 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.97 -11.34 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.025 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds