Wall clock time and date at job start Tue Mar 31 2020 18:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36931 * 119.99866 * 2 1 4 4 H 1.08004 * 119.99747 * 203.78487 * 3 2 1 5 5 C 1.38813 * 120.00252 * 23.77900 * 3 2 1 6 6 N 1.31619 * 119.99998 * 11.03586 * 5 3 2 7 7 Si 1.86800 * 119.99901 * 191.03996 * 5 3 2 8 8 H 1.48502 * 109.47136 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47498 * 119.99690 * 7 5 3 10 10 H 1.48508 * 109.46984 * 239.99918 * 7 5 3 11 11 C 1.46501 * 120.00062 * 179.97438 * 2 1 3 12 12 H 1.08993 * 110.78044 * 183.24122 * 11 2 1 13 13 C 1.55155 * 110.72262 * 306.48161 * 11 2 1 14 14 C 1.54911 * 101.58431 * 153.86175 * 13 11 2 15 15 N 1.47427 * 104.82800 * 322.99034 * 14 13 11 16 16 C 1.34777 * 125.64420 * 204.16097 * 15 14 13 17 17 O 1.21287 * 119.99861 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.00223 * 359.96055 * 16 15 14 19 19 H 1.08995 * 109.20162 * 55.64694 * 18 16 15 20 20 C 1.53290 * 109.20384 * 296.33837 * 18 16 15 21 21 N 1.46782 * 108.50580 * 299.77730 * 20 18 16 22 22 C 1.49419 * 112.10241 * 193.76418 * 21 20 18 23 23 C 1.57021 * 99.32559 * 113.45575 * 22 21 20 24 24 C 1.56485 * 107.13486 * 40.31908 * 23 22 21 25 25 C 1.49517 * 107.61202 * 302.19694 * 21 20 18 26 26 C 1.54369 * 104.42585 * 288.57025 * 25 21 20 27 27 C 1.50167 * 114.92373 * 57.52719 * 25 21 20 28 28 O 1.42805 * 109.20368 * 175.00355 * 18 16 15 29 29 C 1.47023 * 108.70548 * 24.12721 * 15 14 13 30 30 H 1.09000 * 109.46714 * 274.79298 * 1 2 3 31 31 H 1.08997 * 109.46983 * 34.79063 * 1 2 3 32 32 H 1.09003 * 109.46977 * 154.79351 * 1 2 3 33 33 H 0.96999 * 119.99619 * 179.97438 * 6 5 3 34 34 H 1.09000 * 111.00659 * 35.78801 * 13 11 2 35 35 H 1.08996 * 111.03580 * 271.95075 * 13 11 2 36 36 H 1.09001 * 110.36905 * 204.15304 * 14 13 11 37 37 H 1.08996 * 110.45687 * 81.87523 * 14 13 11 38 38 H 1.08998 * 109.62944 * 59.48142 * 20 18 16 39 39 H 1.08996 * 109.62773 * 180.02562 * 20 18 16 40 40 H 1.09001 * 111.42963 * 230.97973 * 22 21 20 41 41 H 1.08995 * 111.43250 * 355.87167 * 22 21 20 42 42 H 1.09001 * 118.35405 * 180.88582 * 23 22 21 43 43 H 1.09004 * 114.69961 * 190.06843 * 24 23 22 44 44 H 1.09006 * 114.69601 * 55.82027 * 24 23 22 45 45 H 1.08999 * 114.72531 * 45.66218 * 26 25 21 46 46 H 1.09005 * 114.71693 * 179.97438 * 26 25 21 47 47 H 1.08996 * 109.69699 * 187.22583 * 27 25 21 48 48 H 1.09003 * 109.70680 * 66.62002 * 27 25 21 49 49 H 1.09004 * 109.87828 * 118.35600 * 29 15 14 50 50 H 1.09001 * 109.87763 * 239.51931 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2256 -0.3772 5 6 1.5440 2.3370 0.4847 6 7 0.4053 2.2557 1.1397 7 14 2.3451 4.0016 0.2072 8 1 3.6097 3.8222 -0.5504 9 1 1.4234 4.8718 -0.5663 10 1 2.6395 4.6340 1.5183 11 6 2.1976 -1.2687 0.0006 12 1 3.2720 -1.0949 0.0581 13 6 1.7249 -2.1751 1.1678 14 6 2.0499 -3.5861 0.6173 15 7 1.7501 -3.5071 -0.8240 16 6 1.4393 -4.5494 -1.6199 17 8 1.2098 -4.3665 -2.7968 18 6 1.3772 -5.9422 -1.0477 19 1 0.6796 -5.9549 -0.2104 20 6 2.7696 -6.3450 -0.5490 21 7 3.6987 -6.3125 -1.6849 22 6 4.9895 -6.9984 -1.3752 23 6 4.8764 -8.2125 -2.3645 24 6 4.2722 -7.6643 -3.6999 25 6 3.1691 -7.2423 -2.7292 26 6 3.4016 -8.6514 -2.1432 27 6 1.7785 -6.9338 -3.2047 28 8 0.9182 -6.8439 -2.0554 29 6 1.8455 -2.1029 -1.2492 30 1 -0.3633 0.0859 1.0241 31 1 -0.3633 0.8439 -0.5863 32 1 -0.3633 -0.9298 -0.4377 33 1 -0.0177 3.0601 1.4787 34 1 0.6551 -2.0608 1.3426 35 1 2.2912 -1.9702 2.0763 36 1 1.4184 -4.3347 1.0956 37 1 3.1024 -3.8228 0.7734 38 1 3.1018 -5.6431 0.2159 39 1 2.7326 -7.3521 -0.1339 40 1 5.8442 -6.3664 -1.6165 41 1 5.0249 -7.3309 -0.3378 42 1 5.6834 -8.9450 -2.3794 43 1 3.9794 -8.4319 -4.4162 44 1 4.8270 -6.8387 -4.1457 45 1 3.1114 -8.7643 -1.0987 46 1 3.0693 -9.4707 -2.7808 47 1 1.4303 -7.7297 -3.8630 48 1 1.7755 -5.9849 -3.7411 49 1 2.6288 -1.9952 -1.9995 50 1 0.8901 -1.7736 -1.6577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971969527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:38 Heat of formation + Delta-G solvation = 22.757472 kcal Electronic energy + Delta-G solvation = -31047.747481 eV Core-core repulsion = 27078.113680 eV Total energy + Delta-G solvation = -3969.633802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.23460 -41.14818 -39.33923 -37.83640 -36.59131 -34.83540 -33.40574 -31.48326 -30.60687 -30.39264 -29.05342 -28.06951 -26.57910 -25.85898 -25.21773 -24.42412 -23.46826 -21.45016 -21.06611 -20.72226 -19.61130 -18.95355 -18.18748 -17.71881 -17.37221 -17.20723 -16.65678 -16.59809 -16.29371 -15.73898 -15.45331 -15.26515 -15.02350 -14.95489 -14.52169 -14.39179 -14.16213 -14.02174 -13.76465 -13.48789 -13.34760 -13.09707 -12.93161 -12.84972 -12.78415 -12.54409 -12.48768 -12.41454 -12.25489 -12.19854 -12.05796 -11.96545 -11.79528 -11.56722 -11.46703 -11.18898 -11.11290 -10.66555 -10.21585 -9.61462 -9.48229 -8.80609 -7.84474 -5.34487 1.46188 1.48402 1.57867 1.58536 1.92808 2.50458 2.58819 2.69730 3.27842 3.28025 3.36501 3.40903 3.50839 3.57223 3.59255 3.81767 3.89158 3.97583 4.07393 4.10446 4.27493 4.31790 4.36353 4.37785 4.44264 4.55350 4.58133 4.66432 4.72723 4.74448 4.74846 4.83786 4.87975 4.91380 4.92169 4.98794 5.00022 5.08733 5.17334 5.18744 5.26367 5.34525 5.40630 5.54177 5.63404 5.68247 5.84271 5.89844 6.31180 6.57644 7.11780 7.15160 7.82729 8.27957 9.19042 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.002736 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.581223 B =10230.063691 C =10486.519270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.603 5.603 3 C -0.267 4.267 4 H 0.072 0.928 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.267 1.267 9 H -0.295 1.295 10 H -0.289 1.289 11 C 0.168 3.832 12 H 0.081 0.919 13 C -0.140 4.140 14 C 0.105 3.895 15 N -0.605 5.605 16 C 0.511 3.489 17 O -0.581 6.581 18 C 0.083 3.917 19 H 0.153 0.847 20 C 0.012 3.988 21 N -0.498 5.498 22 C 0.032 3.968 23 C -0.128 4.128 24 C -0.111 4.111 25 C 0.000 4.000 26 C -0.163 4.163 27 C 0.074 3.926 28 O -0.368 6.368 29 C 0.103 3.897 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.018 0.982 33 H 0.249 0.751 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.115 0.885 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 -26.304 -1.430 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.324 5.324 3 C -0.397 4.397 4 H 0.090 0.910 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.191 1.191 9 H -0.222 1.222 10 H -0.216 1.216 11 C 0.059 3.941 12 H 0.099 0.901 13 C -0.180 4.180 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.300 3.700 17 O -0.462 6.462 18 C 0.022 3.978 19 H 0.170 0.830 20 C -0.116 4.116 21 N -0.223 5.223 22 C -0.095 4.095 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.090 4.090 26 C -0.201 4.201 27 C -0.002 4.002 28 O -0.285 6.285 29 C -0.023 4.023 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.138 0.862 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.133 0.867 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.306 -25.600 -2.153 27.000 hybrid contribution -0.101 1.043 -0.062 1.050 sum 8.205 -24.557 -2.215 25.986 Atomic orbital electron populations 1.20425 0.82978 0.95048 0.97720 1.44018 1.01845 1.01089 1.85472 1.19585 0.98982 0.86772 1.34346 0.91000 1.25785 0.98435 1.01837 0.98334 1.70218 1.19935 1.27721 1.40290 0.85179 0.78011 0.79971 0.77112 1.19116 1.22158 1.21558 1.21448 0.96077 0.84810 0.91762 0.90127 1.23198 1.01821 0.93858 0.99133 1.22618 1.02321 0.98156 0.78583 1.48538 1.67779 1.06336 1.11271 1.21561 0.75342 0.87230 0.85822 1.90591 1.51967 1.85552 1.18078 1.22296 0.98802 0.84675 0.92060 0.83013 1.23198 0.90356 1.03404 0.94660 1.67204 1.03803 1.43578 1.07693 1.23921 0.92316 0.93871 0.99368 1.24844 0.97040 0.97905 0.94886 1.23405 0.95382 1.00744 0.95340 1.23464 0.95645 0.92567 0.97313 1.24494 0.96975 0.96908 1.01747 1.22109 0.87280 1.02855 0.87977 1.88099 1.49364 1.61273 1.29776 1.22345 0.99723 0.81309 0.98887 0.96831 0.97038 0.96359 0.94218 0.92121 0.89094 0.87801 0.88814 0.86976 0.90033 0.89436 0.89309 0.85173 0.86230 0.92102 0.91179 0.87667 0.86713 0.92321 0.93592 0.94198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.23 7.45 127.77 0.95 10.18 16 2 N -0.60 -29.90 2.93 -696.14 -2.04 -31.94 16 3 C -0.27 -14.52 9.60 84.03 0.81 -13.71 16 4 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16 5 C -0.05 -2.70 5.14 84.86 0.44 -2.26 16 6 N -0.94 -54.84 10.65 21.65 0.23 -54.61 16 7 Si 0.97 44.95 29.57 68.60 2.03 46.98 16 8 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 C 0.17 6.54 3.43 46.18 0.16 6.70 16 12 H 0.08 3.10 7.95 -2.39 -0.02 3.08 16 13 C -0.14 -4.31 6.62 31.99 0.21 -4.10 16 14 C 0.10 2.37 5.27 86.86 0.46 2.83 16 15 N -0.60 -18.73 3.32 -811.77 -2.70 -21.43 16 16 C 0.51 16.51 6.56 87.66 0.58 17.08 16 17 O -0.58 -24.05 14.19 16.08 0.23 -23.82 16 18 C 0.08 1.94 3.02 29.95 0.09 2.03 16 19 H 0.15 2.69 7.63 -2.39 -0.02 2.68 16 20 C 0.01 0.22 4.75 86.42 0.41 0.63 16 21 N -0.50 -10.37 5.57 -875.26 -4.87 -15.24 16 22 C 0.03 0.47 7.02 87.22 0.61 1.09 16 23 C -0.13 -1.55 6.40 -15.59 -0.10 -1.65 16 24 C -0.11 -1.72 7.81 28.25 0.22 -1.50 16 25 C 0.00 0.01 1.59 -5.74 -0.01 0.00 16 26 C -0.16 -2.20 7.01 28.38 0.20 -2.01 16 27 C 0.07 1.83 6.16 71.07 0.44 2.27 16 28 O -0.37 -9.73 10.48 -129.85 -1.36 -11.09 16 29 C 0.10 3.95 6.39 86.73 0.55 4.50 16 30 H 0.01 0.73 7.35 -2.39 -0.02 0.71 16 31 H 0.01 0.61 7.32 -2.39 -0.02 0.59 16 32 H 0.02 0.83 6.59 -2.39 -0.02 0.81 16 33 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.06 2.08 7.08 -2.39 -0.02 2.06 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.10 1.66 7.34 -2.39 -0.02 1.64 16 37 H 0.09 1.71 7.10 -2.39 -0.02 1.69 16 38 H 0.11 1.67 5.39 -2.39 -0.01 1.66 16 39 H 0.08 1.13 5.97 -2.39 -0.01 1.12 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 0.99 7.73 -2.39 -0.02 0.97 16 42 H 0.13 1.03 8.14 -2.39 -0.02 1.02 16 43 H 0.12 1.34 7.85 -2.39 -0.02 1.32 16 44 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.07 0.96 6.08 -2.39 -0.01 0.95 16 46 H 0.10 1.17 7.85 -2.38 -0.02 1.15 16 47 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.06 1.92 5.61 -2.39 -0.01 1.91 16 49 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 50 H 0.04 1.76 6.47 -2.39 -0.02 1.75 16 Total: -1.00 -72.91 368.60 -1.52 -74.43 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.94 Total: 14.63 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 6.01 Total: 22.09 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -9.38 Total: -123.22 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.13 Total: -34.91 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -72.91 -1.52 -74.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971969527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.188 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds