Wall clock time and date at job start Tue Mar 31 2020 18:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36928 * 120.00132 * 2 1 4 4 H 1.08007 * 119.99966 * 165.18279 * 3 2 1 5 5 C 1.38807 * 120.00124 * 345.18840 * 3 2 1 6 6 N 1.31622 * 120.00168 * 326.83534 * 5 3 2 7 7 Si 1.86804 * 119.99960 * 146.83805 * 5 3 2 8 8 H 1.48502 * 109.47271 * 179.97438 * 7 5 3 9 9 H 1.48498 * 109.47183 * 299.99880 * 7 5 3 10 10 H 1.48501 * 109.47439 * 60.00045 * 7 5 3 11 11 C 1.46504 * 119.99643 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.63775 * 180.70288 * 11 2 1 13 13 C 1.55163 * 110.71520 * 303.83863 * 11 2 1 14 14 C 1.55126 * 101.48447 * 153.73982 * 13 11 2 15 15 N 1.47428 * 104.93764 * 323.21802 * 14 13 11 16 16 C 1.34777 * 125.64177 * 203.96536 * 15 14 13 17 17 O 1.21284 * 119.99608 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00521 * 0.04883 * 16 15 14 19 19 H 1.09000 * 110.32257 * 27.49834 * 18 16 15 20 20 C 1.54910 * 110.36345 * 265.26310 * 18 16 15 21 21 C 1.55152 * 101.57999 * 204.14708 * 20 18 16 22 22 C 1.54330 * 102.94146 * 35.50755 * 21 20 18 23 23 N 1.47181 * 107.28966 * 337.70865 * 22 21 20 24 24 C 1.34783 * 125.73219 * 179.03496 * 23 22 21 25 25 O 1.21280 * 119.99389 * 185.18307 * 24 23 22 26 26 C 1.50696 * 120.00211 * 5.18582 * 24 23 22 27 27 C 1.52998 * 117.50142 * 248.74369 * 26 24 23 28 28 C 1.53001 * 117.49860 * 180.08423 * 26 24 23 29 29 C 1.47022 * 108.70710 * 24.00906 * 15 14 13 30 30 H 1.09001 * 109.47407 * 93.18784 * 1 2 3 31 31 H 1.08997 * 109.47270 * 213.19159 * 1 2 3 32 32 H 1.09004 * 109.46586 * 333.19098 * 1 2 3 33 33 H 0.96996 * 119.99825 * 353.78181 * 6 5 3 34 34 H 1.09008 * 111.00320 * 271.93815 * 13 11 2 35 35 H 1.09001 * 111.00673 * 35.79311 * 13 11 2 36 36 H 1.08999 * 110.41809 * 204.29231 * 14 13 11 37 37 H 1.08995 * 110.30127 * 82.08597 * 14 13 11 38 38 H 1.08994 * 111.00512 * 322.22468 * 20 18 16 39 39 H 1.09006 * 111.00579 * 86.04014 * 20 18 16 40 40 H 1.09004 * 110.72125 * 153.86620 * 21 20 18 41 41 H 1.08995 * 110.72387 * 276.96500 * 21 20 18 42 42 H 1.08995 * 109.88876 * 97.22247 * 22 21 20 43 43 H 1.09007 * 109.88120 * 218.23470 * 22 21 20 44 44 H 1.08997 * 115.54966 * 34.41485 * 26 24 23 45 45 H 1.09005 * 117.49364 * 0.02562 * 27 26 24 46 46 H 1.08994 * 117.50016 * 145.01608 * 27 26 24 47 47 H 1.09003 * 117.49513 * 214.97536 * 28 26 24 48 48 H 1.08991 * 117.50128 * 359.97438 * 28 26 24 49 49 H 1.09000 * 109.87988 * 239.52655 * 29 15 14 50 50 H 1.08993 * 109.88336 * 118.35439 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2028 1.2013 0.2392 5 6 1.4903 2.3680 -0.3073 6 7 0.5031 2.3638 -1.1778 7 14 2.0041 3.9649 0.5146 8 1 1.1503 5.0740 0.0184 9 1 1.8458 3.8378 1.9856 10 1 3.4250 4.2526 0.1926 11 6 2.1975 -1.2688 -0.0006 12 1 3.2728 -1.0916 0.0120 13 6 1.7719 -2.1487 1.2045 14 6 2.0735 -3.5730 0.6687 15 7 1.7206 -3.5234 -0.7618 16 6 1.3823 -4.5820 -1.5244 17 8 1.1102 -4.4233 -2.6956 18 6 1.3416 -5.9626 -0.9218 19 1 1.1263 -5.9038 0.1452 20 6 2.6855 -6.6951 -1.1611 21 6 2.2498 -8.1816 -1.0736 22 6 0.8423 -8.1671 -1.7065 23 7 0.3309 -6.7908 -1.6042 24 6 -0.8618 -6.3584 -2.0594 25 8 -1.1406 -5.1794 -2.0042 26 6 -1.8488 -7.3399 -2.6369 27 6 -2.1274 -7.2606 -4.1392 28 6 -3.1842 -6.7866 -3.1384 29 6 1.7998 -2.1283 -1.2190 30 1 -0.3634 -0.0571 -1.0261 31 1 -0.3634 -0.8600 0.5626 32 1 -0.3633 0.9173 0.4635 33 1 0.2950 1.5551 -1.6712 34 1 2.3745 -1.9237 2.0846 35 1 0.7099 -2.0301 1.4192 36 1 1.4603 -4.3113 1.1854 37 1 3.1310 -3.8068 0.7907 38 1 3.0867 -6.4629 -2.1475 39 1 3.4071 -6.4524 -0.3810 40 1 2.9246 -8.8158 -1.6487 41 1 2.2054 -8.5101 -0.0353 42 1 0.9034 -8.4643 -2.7534 43 1 0.1856 -8.8485 -1.1656 44 1 -1.8546 -8.3273 -2.1754 45 1 -1.5964 -6.4986 -4.7099 46 1 -2.3168 -8.1958 -4.6660 47 1 -4.0684 -7.4104 -3.0072 48 1 -3.3490 -5.7129 -3.0502 49 1 0.8299 -1.8070 -1.5986 50 1 2.5548 -2.0364 -1.9997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972494913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:22 Heat of formation + Delta-G solvation = 1.389744 kcal Electronic energy + Delta-G solvation = -30474.489103 eV Core-core repulsion = 26503.928727 eV Total energy + Delta-G solvation = -3970.560376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.82429 -39.28391 -38.00591 -36.96885 -36.00163 -35.00036 -32.02894 -31.65250 -30.08102 -29.50352 -27.69928 -26.16969 -25.44487 -23.90784 -22.68227 -22.52841 -22.22632 -21.70283 -19.96115 -19.23697 -18.45797 -17.61924 -17.55899 -17.40881 -15.97093 -15.91456 -15.45771 -15.09275 -14.69637 -14.51331 -14.30173 -13.92442 -13.68565 -13.62844 -13.51386 -13.15743 -12.99577 -12.75675 -12.57057 -12.36726 -12.28968 -11.94441 -11.79180 -11.76479 -11.71533 -11.40054 -11.21642 -10.89768 -10.79999 -10.74294 -10.69287 -10.61896 -10.51621 -10.08919 -9.98423 -9.80070 -9.62766 -9.49586 -8.74164 -8.29886 -8.23367 -7.01741 -6.09749 -3.11557 2.44680 2.53365 3.01904 3.30227 3.52024 3.56626 3.70314 3.74573 4.05567 4.20814 4.47847 4.51522 4.58661 4.61037 4.67850 4.70176 4.81994 4.89174 4.97610 5.00959 5.16336 5.26213 5.33290 5.35471 5.39074 5.40650 5.48120 5.49495 5.51586 5.57479 5.74371 5.77477 5.78098 5.81241 5.96088 5.96440 6.06151 6.29554 6.33841 6.48602 6.62628 6.70953 6.83209 6.96882 7.20235 7.34435 7.86906 7.93820 8.15962 8.51679 8.55258 9.08740 9.85926 10.22484 11.19642 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.002946 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.901536 B = 9501.956302 C =10603.580441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.589 5.589 3 C -0.367 4.367 4 H 0.065 0.935 5 C -0.019 4.019 6 N -0.906 5.906 7 Si 1.057 2.943 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.293 1.293 11 C 0.176 3.824 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.100 3.900 15 N -0.611 5.611 16 C 0.529 3.471 17 O -0.523 6.523 18 C 0.120 3.880 19 H 0.092 0.908 20 C -0.120 4.120 21 C -0.129 4.129 22 C 0.105 3.895 23 N -0.607 5.607 24 C 0.556 3.444 25 O -0.507 6.507 26 C -0.188 4.188 27 C -0.152 4.152 28 C -0.148 4.148 29 C 0.090 3.910 30 H 0.009 0.991 31 H 0.019 0.981 32 H 0.060 0.940 33 H 0.271 0.729 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.068 0.932 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -27.223 2.312 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.310 5.310 3 C -0.495 4.495 4 H 0.083 0.917 5 C -0.222 4.222 6 N -0.545 5.545 7 Si 0.886 3.114 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.220 1.220 11 C 0.065 3.935 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.315 3.685 17 O -0.398 6.398 18 C 0.013 3.987 19 H 0.110 0.890 20 C -0.159 4.159 21 C -0.167 4.167 22 C -0.018 4.018 23 N -0.344 5.344 24 C 0.344 3.656 25 O -0.380 6.380 26 C -0.209 4.209 27 C -0.189 4.189 28 C -0.185 4.185 29 C -0.035 4.035 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.087 0.913 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.357 -24.834 1.752 24.898 hybrid contribution 0.480 -1.807 -0.129 1.874 sum 0.836 -26.641 1.624 26.703 Atomic orbital electron populations 1.21009 0.83599 0.99071 0.97707 1.44016 1.01139 1.00666 1.85141 1.19980 0.96102 0.85270 1.48115 0.91750 1.25683 0.98277 1.00722 0.97529 1.70781 1.33271 1.30827 1.19620 0.83657 0.75307 0.76243 0.76147 1.21199 1.22117 1.22040 1.21317 0.96340 0.85593 0.90234 0.90263 1.23346 1.02775 0.93059 0.99975 1.22364 0.99531 0.99086 0.81320 1.48429 1.67748 1.07679 1.10769 1.19868 0.77226 0.84970 0.86403 1.90688 1.47591 1.85065 1.16436 1.21843 0.89683 0.90054 0.97072 0.89024 1.22730 0.94735 0.94362 1.04032 1.22635 0.95426 0.96616 1.02017 1.22030 0.95211 0.83195 1.01355 1.48199 1.16106 1.09948 1.60154 1.19328 0.80472 0.88423 0.77349 1.90808 1.76202 1.17003 1.54028 1.22109 0.99028 1.00307 0.99462 1.22951 1.02642 1.03649 0.89675 1.22980 0.91083 1.03024 1.01435 1.22832 1.02019 0.79189 0.99443 0.97292 0.96292 0.92152 0.91742 0.90234 0.90603 0.91605 0.91593 0.89789 0.88975 0.89444 0.90064 0.91107 0.91112 0.86141 0.88036 0.87881 0.87923 0.87289 0.91346 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.29 7.87 59.85 0.47 3.76 16 2 N -0.59 -14.88 2.89 -171.38 -0.50 -15.38 16 3 C -0.37 -10.24 9.49 -15.06 -0.14 -10.38 16 4 H 0.06 1.78 7.92 -52.48 -0.42 1.36 16 5 C -0.02 -0.55 4.55 -17.43 -0.08 -0.63 16 6 N -0.91 -27.74 12.45 55.49 0.69 -27.05 16 7 Si 1.06 25.38 30.03 -169.99 -5.10 20.28 16 8 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.18 3.63 3.44 -66.09 -0.23 3.40 16 12 H 0.08 1.62 7.88 -51.93 -0.41 1.21 16 13 C -0.15 -2.51 6.64 -24.46 -0.16 -2.67 16 14 C 0.10 1.38 6.66 -2.41 -0.02 1.37 16 15 N -0.61 -10.82 3.33 -170.39 -0.57 -11.39 16 16 C 0.53 9.54 5.71 -10.99 -0.06 9.48 16 17 O -0.52 -11.74 15.16 -16.76 -0.25 -11.99 16 18 C 0.12 1.54 3.17 -67.57 -0.21 1.32 16 19 H 0.09 1.05 6.49 -51.93 -0.34 0.71 16 20 C -0.12 -1.06 6.49 -24.58 -0.16 -1.22 16 21 C -0.13 -0.74 6.95 -24.90 -0.17 -0.92 16 22 C 0.10 0.79 6.37 -2.97 -0.02 0.77 16 23 N -0.61 -7.61 3.12 -164.22 -0.51 -8.12 16 24 C 0.56 8.42 7.08 -10.98 -0.08 8.34 16 25 O -0.51 -10.36 13.91 -16.76 -0.23 -10.59 16 26 C -0.19 -2.01 5.51 -91.77 -0.51 -2.52 16 27 C -0.15 -1.49 10.24 -26.70 -0.27 -1.76 16 28 C -0.15 -1.54 10.05 -26.69 -0.27 -1.81 16 29 C 0.09 1.89 6.51 -3.06 -0.02 1.87 16 30 H 0.01 0.24 6.63 -51.93 -0.34 -0.10 16 31 H 0.02 0.42 6.14 -51.93 -0.32 0.10 16 32 H 0.06 1.62 6.78 -51.93 -0.35 1.27 16 33 H 0.27 8.48 6.37 -40.82 -0.26 8.22 16 34 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 36 H 0.07 0.77 6.75 -51.93 -0.35 0.42 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.87 8.05 -51.93 -0.42 0.46 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.39 7.97 -51.93 -0.41 -0.03 16 44 H 0.12 0.92 7.75 -51.93 -0.40 0.52 16 45 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.11 1.42 7.67 -51.93 -0.40 1.02 16 49 H 0.07 1.68 6.81 -51.93 -0.35 1.33 16 50 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -37.63 389.71 -10.65 -48.28 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.12 Total: 1.68 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.93 Total: 8.41 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.88 Total: -61.93 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.49 Total: -22.58 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.10 Total: 20.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.63 -10.65 -48.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972494913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.670 kcal (2) G-P(sol) polarization free energy of solvation -37.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds