Wall clock time and date at job start Tue Mar 31 2020 18:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.50696 * 109.46994 * 190.00058 * 4 2 1 6 6 C 1.40364 * 126.64653 * 260.02616 * 5 4 2 7 7 C 1.35132 * 107.11346 * 180.02562 * 6 5 4 8 8 O 1.33929 * 108.77065 * 359.97438 * 7 6 5 9 9 C 1.34914 * 109.38492 * 359.73615 * 8 7 6 10 10 C 1.46652 * 125.99131 * 180.30769 * 9 8 7 11 11 O 1.21702 * 119.99915 * 180.14689 * 10 9 8 12 12 N 1.34770 * 120.00331 * 0.14643 * 10 9 8 13 13 C 1.46496 * 120.00582 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47298 * 325.00697 * 13 12 10 15 15 C 1.53008 * 109.46961 * 85.00243 * 13 12 10 16 16 C 1.53005 * 109.46980 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.46766 * 299.99732 * 16 15 13 18 18 C 1.53000 * 109.47298 * 60.00557 * 17 16 15 19 19 H 1.09005 * 109.47121 * 179.97438 * 18 17 16 20 20 N 1.46497 * 109.47123 * 59.99415 * 18 17 16 21 21 C 1.36943 * 120.00070 * 85.00321 * 20 18 17 22 22 H 1.07998 * 119.99769 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00114 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00369 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00067 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47037 * 89.99766 * 25 23 21 27 27 H 1.48496 * 109.47020 * 209.99783 * 25 23 21 28 28 H 1.48496 * 109.46979 * 330.00142 * 25 23 21 29 29 C 1.52997 * 109.47194 * 299.99486 * 18 17 16 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 34 34 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 36 36 H 1.08999 * 109.47248 * 309.99990 * 4 2 1 37 37 H 1.09000 * 109.46941 * 70.00310 * 4 2 1 38 38 H 1.07998 * 126.44416 * 0.02562 * 6 5 4 39 39 H 1.08009 * 125.61539 * 179.97438 * 7 6 5 40 40 H 0.97008 * 120.00010 * 0.02562 * 12 10 9 41 41 H 1.08995 * 109.46873 * 300.00223 * 15 13 12 42 42 H 1.08996 * 109.46743 * 60.00114 * 15 13 12 43 43 H 1.08998 * 109.46543 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.47012 * 60.00090 * 16 15 13 45 45 H 1.08997 * 109.47647 * 299.99969 * 17 16 15 46 46 H 1.09007 * 109.46982 * 180.02562 * 17 16 15 47 47 H 0.96996 * 120.00181 * 264.99985 * 20 18 17 48 48 H 0.96996 * 120.00331 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.47038 * 300.00519 * 29 18 17 50 50 H 1.08990 * 109.47577 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 3.4817 -0.9525 -0.9729 6 6 4.4939 -0.2110 -1.6019 7 6 5.6754 -0.7081 -1.1741 8 8 5.4367 -1.7109 -0.3190 9 6 4.1046 -1.8717 -0.1781 10 6 3.4418 -2.8624 0.6762 11 8 2.2266 -2.9134 0.7188 12 7 4.1782 -3.7163 1.4143 13 6 3.5161 -4.7056 2.2681 14 1 2.6006 -4.2781 2.6769 15 6 3.1743 -5.9463 1.4406 16 6 2.4822 -6.9793 2.3322 17 6 3.4171 -7.3720 3.4778 18 6 3.7589 -6.1314 4.3054 19 1 4.4246 -6.4113 5.1219 20 7 2.5284 -5.5564 4.8544 21 6 2.0129 -6.0364 6.0288 22 1 2.5133 -6.8391 6.5500 23 6 0.8473 -5.4912 6.5493 24 7 0.3515 -5.9528 7.6778 25 14 -0.0186 -4.1032 5.6474 26 1 -1.0050 -4.6719 4.6940 27 1 -0.7208 -3.2376 6.6285 28 1 0.9816 -3.2971 4.9026 29 6 4.4509 -5.0984 3.4139 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 1.6461 1.8947 0.8901 34 1 3.0851 1.3422 0.0005 35 1 1.6460 1.8948 -0.8900 36 1 1.5089 -1.7407 -1.1757 37 1 1.7975 -0.2247 -2.0628 38 1 4.3547 0.6037 -2.2971 39 1 6.6515 -0.3549 -1.4725 40 1 5.1469 -3.6755 1.3807 41 1 2.5080 -5.6666 0.6246 42 1 4.0898 -6.3739 1.0318 43 1 2.2383 -7.8630 1.7425 44 1 1.5667 -6.5515 2.7407 45 1 4.3326 -7.7999 3.0694 46 1 2.9242 -8.1083 4.1129 47 1 2.0788 -4.8357 4.3861 48 1 -0.4628 -5.5716 8.0416 49 1 5.3665 -5.5263 3.0053 50 1 4.6949 -4.2148 4.0034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981297526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:34 Heat of formation + Delta-G solvation = -4.118270 kcal Electronic energy + Delta-G solvation = -30267.914739 eV Core-core repulsion = 26297.115518 eV Total energy + Delta-G solvation = -3970.799221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.93846 -39.78217 -38.09892 -37.50844 -34.63443 -33.48691 -33.01616 -31.15903 -30.65850 -29.30093 -28.46726 -27.65256 -27.22736 -23.76794 -23.23396 -22.29979 -22.02821 -21.82815 -20.87425 -19.96575 -18.76357 -18.00937 -17.64972 -16.62623 -16.34659 -16.02045 -15.32951 -15.30332 -14.89623 -14.66891 -14.56177 -14.43442 -14.00938 -13.97155 -13.61440 -13.41906 -13.21710 -12.70442 -12.61155 -12.44568 -12.33329 -12.18535 -12.11898 -11.85702 -11.78170 -11.65465 -11.56611 -10.99421 -10.84896 -10.71149 -10.31177 -10.27151 -10.16413 -10.08153 -9.95028 -9.60948 -9.48734 -9.02922 -8.83530 -8.71717 -8.40132 -7.20006 -5.70908 -3.05854 0.91961 2.07541 2.52520 3.19044 3.24161 3.47056 3.52536 3.55936 3.98606 4.45126 4.47958 4.66941 4.72406 4.99717 5.03495 5.10001 5.13129 5.19377 5.23299 5.37170 5.39093 5.43380 5.46369 5.55518 5.59111 5.63042 5.69114 5.73089 5.74308 5.79386 5.82312 5.90201 6.00629 6.02590 6.06612 6.10160 6.27104 6.36073 6.43711 6.55046 6.66083 6.72196 6.78837 6.91074 6.93763 6.95447 7.02042 7.55027 8.05672 8.19909 8.48273 9.27265 10.00331 10.19608 11.47381 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.003729 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.755903 B = 7506.469514 C = 9044.267220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.531 5.531 3 C 0.023 3.977 4 C 0.121 3.879 5 C -0.092 4.092 6 C -0.220 4.220 7 C -0.012 4.012 8 O -0.164 6.164 9 C -0.051 4.051 10 C 0.598 3.402 11 O -0.498 6.498 12 N -0.717 5.717 13 C 0.145 3.855 14 H 0.093 0.907 15 C -0.122 4.122 16 C -0.110 4.110 17 C -0.136 4.136 18 C 0.186 3.814 19 H 0.060 0.940 20 N -0.746 5.746 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.877 3.123 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.275 1.275 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.152 0.848 39 H 0.208 0.792 40 H 0.400 0.600 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.067 0.933 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.067 0.933 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 11.324 -22.310 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.255 5.255 3 C -0.125 4.125 4 C -0.006 4.006 5 C -0.095 4.095 6 C -0.239 4.239 7 C -0.082 4.082 8 O -0.059 6.059 9 C -0.105 4.105 10 C 0.383 3.617 11 O -0.373 6.373 12 N -0.367 5.367 13 C 0.042 3.958 14 H 0.111 0.889 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.075 3.925 19 H 0.078 0.922 20 N -0.390 5.390 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.201 1.201 29 C -0.171 4.171 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.170 0.830 39 H 0.225 0.775 40 H 0.234 0.766 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.196 0.804 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.621 10.743 -21.437 26.225 hybrid contribution -0.457 1.738 -1.513 2.349 sum 10.164 12.481 -22.950 28.031 Atomic orbital electron populations 1.22354 0.86583 1.02961 0.99986 1.61827 1.08085 1.13140 1.42452 1.22430 1.00862 0.88943 1.00277 1.20512 0.88947 0.99904 0.91228 1.20365 0.96623 0.95355 0.97144 1.21701 0.91794 1.04335 1.06107 1.24267 1.00466 0.89875 0.93576 1.84073 1.24760 1.45083 1.51990 1.22106 0.80128 1.03198 1.05032 1.16518 0.86465 0.79427 0.79319 1.90909 1.11865 1.70189 1.64357 1.46077 1.10141 1.35124 1.45334 1.21101 0.97225 0.87773 0.89701 0.88941 1.21883 1.00420 0.95424 0.98371 1.21367 0.99910 0.97397 0.96148 1.22153 0.98164 0.99922 0.97340 1.20122 0.88571 0.90585 0.93177 0.92167 1.42879 1.27080 1.42482 1.26582 1.19065 1.05623 1.15259 0.97137 0.89168 1.24626 0.97999 0.99284 0.97009 1.69696 1.23255 1.44731 1.20620 0.86657 0.80173 0.83199 0.79201 1.20978 1.21818 1.20134 1.22128 0.97984 1.00718 0.96225 0.90701 0.96044 0.91306 0.91475 0.91457 0.96015 0.88457 0.94212 0.83022 0.77508 0.76614 0.92157 0.92339 0.92840 0.90918 0.93458 0.91437 0.80449 0.93146 0.91476 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 60.07 0.57 0.91 16 2 N -0.53 -6.80 5.01 -252.71 -1.27 -8.07 16 3 C 0.02 0.24 9.43 60.06 0.57 0.81 16 4 C 0.12 1.45 4.59 -4.97 -0.02 1.43 16 5 C -0.09 -1.08 4.76 -104.43 -0.50 -1.57 16 6 C -0.22 -1.91 10.10 -39.89 -0.40 -2.31 16 7 C -0.01 -0.09 12.08 29.63 0.36 0.26 16 8 O -0.16 -1.74 10.40 5.00 0.05 -1.69 16 9 C -0.05 -0.67 7.13 -36.80 -0.26 -0.93 16 10 C 0.60 9.12 7.75 -12.87 -0.10 9.02 16 11 O -0.50 -9.11 14.66 5.19 0.08 -9.03 16 12 N -0.72 -9.75 5.07 -55.12 -0.28 -10.03 16 13 C 0.15 2.28 2.28 -67.93 -0.16 2.13 16 14 H 0.09 1.81 5.94 -51.93 -0.31 1.50 16 15 C -0.12 -1.81 5.50 -26.72 -0.15 -1.96 16 16 C -0.11 -1.81 5.77 -26.73 -0.15 -1.96 16 17 C -0.14 -2.28 5.61 -26.73 -0.15 -2.43 16 18 C 0.19 3.43 3.10 -67.93 -0.21 3.22 16 19 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 20 N -0.75 -17.47 4.08 -53.43 -0.22 -17.69 16 21 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.94 -29.69 13.97 55.49 0.78 -28.91 16 25 Si 0.88 23.11 27.74 -169.99 -4.71 18.40 16 26 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 28 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16 29 C -0.13 -1.99 5.08 -26.73 -0.14 -2.12 16 30 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.07 0.70 6.59 -51.93 -0.34 0.36 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.10 1.31 6.96 -51.93 -0.36 0.95 16 37 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.21 0.68 8.06 -52.48 -0.42 0.25 16 40 H 0.40 4.39 8.36 -40.82 -0.34 4.05 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.41 7.60 -51.93 -0.39 1.02 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 47 H 0.36 8.64 3.92 -40.82 -0.16 8.48 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -33.96 396.05 -8.86 -42.82 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -8.26 Total: 10.57 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.99 Total: -2.33 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.99 Total: -64.71 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.13 Total: -10.72 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.96 -8.86 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981297526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.699 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds