Wall clock time and date at job start Tue Mar 31 2020 18:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.50696 * 109.46994 * 190.00058 * 4 2 1 6 6 C 1.40364 * 126.64653 * 260.02616 * 5 4 2 7 7 C 1.35132 * 107.11346 * 180.02562 * 6 5 4 8 8 O 1.33929 * 108.77065 * 359.97438 * 7 6 5 9 9 C 1.34914 * 109.38492 * 359.73615 * 8 7 6 10 10 C 1.46652 * 125.99131 * 180.30769 * 9 8 7 11 11 O 1.21702 * 119.99915 * 180.14689 * 10 9 8 12 12 N 1.34770 * 120.00331 * 0.14643 * 10 9 8 13 13 C 1.46496 * 120.00582 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47298 * 325.00697 * 13 12 10 15 15 C 1.53008 * 109.46961 * 85.00243 * 13 12 10 16 16 C 1.53005 * 109.46980 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.46766 * 299.99732 * 16 15 13 18 18 C 1.53000 * 109.47298 * 60.00557 * 17 16 15 19 19 H 1.09005 * 109.47121 * 179.97438 * 18 17 16 20 20 N 1.46497 * 109.47123 * 59.99415 * 18 17 16 21 21 C 1.36943 * 120.00070 * 85.00321 * 20 18 17 22 22 H 1.07998 * 119.99769 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00114 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00369 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00067 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47037 * 89.99766 * 25 23 21 27 27 H 1.48496 * 109.47020 * 209.99783 * 25 23 21 28 28 H 1.48496 * 109.46979 * 330.00142 * 25 23 21 29 29 C 1.52997 * 109.47194 * 299.99486 * 18 17 16 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 34 34 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 36 36 H 1.08999 * 109.47248 * 309.99990 * 4 2 1 37 37 H 1.09000 * 109.46941 * 70.00310 * 4 2 1 38 38 H 1.07998 * 126.44416 * 0.02562 * 6 5 4 39 39 H 1.08009 * 125.61539 * 179.97438 * 7 6 5 40 40 H 0.97008 * 120.00010 * 0.02562 * 12 10 9 41 41 H 1.08995 * 109.46873 * 300.00223 * 15 13 12 42 42 H 1.08996 * 109.46743 * 60.00114 * 15 13 12 43 43 H 1.08998 * 109.46543 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.47012 * 60.00090 * 16 15 13 45 45 H 1.08997 * 109.47647 * 299.99969 * 17 16 15 46 46 H 1.09007 * 109.46982 * 180.02562 * 17 16 15 47 47 H 0.96996 * 120.00181 * 264.99985 * 20 18 17 48 48 H 0.96996 * 120.00331 * 179.97438 * 24 23 21 49 49 H 1.09005 * 109.47038 * 300.00519 * 29 18 17 50 50 H 1.08990 * 109.47577 * 180.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 3.4817 -0.9525 -0.9729 6 6 4.4939 -0.2110 -1.6019 7 6 5.6754 -0.7081 -1.1741 8 8 5.4367 -1.7109 -0.3190 9 6 4.1046 -1.8717 -0.1781 10 6 3.4418 -2.8624 0.6762 11 8 2.2266 -2.9134 0.7188 12 7 4.1782 -3.7163 1.4143 13 6 3.5161 -4.7056 2.2681 14 1 2.6006 -4.2781 2.6769 15 6 3.1743 -5.9463 1.4406 16 6 2.4822 -6.9793 2.3322 17 6 3.4171 -7.3720 3.4778 18 6 3.7589 -6.1314 4.3054 19 1 4.4246 -6.4113 5.1219 20 7 2.5284 -5.5564 4.8544 21 6 2.0129 -6.0364 6.0288 22 1 2.5133 -6.8391 6.5500 23 6 0.8473 -5.4912 6.5493 24 7 0.3515 -5.9528 7.6778 25 14 -0.0186 -4.1032 5.6474 26 1 -1.0050 -4.6719 4.6940 27 1 -0.7208 -3.2376 6.6285 28 1 0.9816 -3.2971 4.9026 29 6 4.4509 -5.0984 3.4139 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 1.6461 1.8947 0.8901 34 1 3.0851 1.3422 0.0005 35 1 1.6460 1.8948 -0.8900 36 1 1.5089 -1.7407 -1.1757 37 1 1.7975 -0.2247 -2.0628 38 1 4.3547 0.6037 -2.2971 39 1 6.6515 -0.3549 -1.4725 40 1 5.1469 -3.6755 1.3807 41 1 2.5080 -5.6666 0.6246 42 1 4.0898 -6.3739 1.0318 43 1 2.2383 -7.8630 1.7425 44 1 1.5667 -6.5515 2.7407 45 1 4.3326 -7.7999 3.0694 46 1 2.9242 -8.1083 4.1129 47 1 2.0788 -4.8357 4.3861 48 1 -0.4628 -5.5716 8.0416 49 1 5.3665 -5.5263 3.0053 50 1 4.6949 -4.2148 4.0034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981297526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:33 Heat of formation + Delta-G solvation = -29.012021 kcal Electronic energy + Delta-G solvation = -30268.994213 eV Core-core repulsion = 26297.115518 eV Total energy + Delta-G solvation = -3971.878695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.69472 -40.99420 -39.40365 -38.43589 -36.12939 -34.80992 -34.19068 -33.05438 -31.59596 -30.64758 -29.86621 -28.49586 -28.15470 -25.40756 -24.59941 -23.35738 -23.21183 -22.86445 -21.92243 -20.99120 -20.03581 -19.79310 -18.99882 -17.45336 -17.33219 -17.16434 -16.50717 -16.21418 -16.19723 -16.06330 -15.79774 -15.66235 -15.48038 -15.19277 -14.99385 -14.64418 -14.27560 -14.09902 -13.87767 -13.75255 -13.47222 -13.40210 -13.15770 -13.01469 -12.97227 -12.75298 -12.65904 -12.50412 -12.49119 -12.21309 -12.19548 -11.84408 -11.62704 -11.57255 -11.30369 -10.97294 -10.89469 -10.79801 -10.14048 -9.56713 -9.26821 -9.26782 -8.02730 -5.31940 0.05758 1.32364 1.35929 1.40164 1.40228 1.69139 2.14142 2.24734 2.44682 3.14131 3.30089 3.60034 3.65219 3.72756 3.85369 3.90502 3.93580 4.11942 4.21682 4.30324 4.32230 4.40036 4.44051 4.48733 4.51550 4.52189 4.64985 4.65744 4.71141 4.73819 4.78098 4.92683 4.95325 4.96449 4.98557 5.03260 5.09559 5.13764 5.27539 5.37521 5.39575 5.42504 5.56811 5.61023 5.82207 5.86469 6.03501 6.11835 6.23405 6.53233 7.09801 7.13800 7.88822 8.04432 9.19372 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011913 B = 0.003729 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.755903 B = 7506.469514 C = 9044.267220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.559 5.559 3 C 0.027 3.973 4 C 0.123 3.877 5 C -0.092 4.092 6 C -0.229 4.229 7 C 0.014 3.986 8 O -0.168 6.168 9 C -0.087 4.087 10 C 0.593 3.407 11 O -0.541 6.541 12 N -0.705 5.705 13 C 0.151 3.849 14 H 0.047 0.953 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.127 4.127 18 C 0.173 3.827 19 H 0.057 0.943 20 N -0.751 5.751 21 C -0.214 4.214 22 H 0.067 0.933 23 C -0.056 4.056 24 N -0.982 5.982 25 Si 0.936 3.064 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.268 1.268 29 C -0.119 4.119 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.178 0.822 39 H 0.257 0.743 40 H 0.415 0.585 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.032 0.968 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.360 0.640 48 H 0.256 0.744 49 H 0.112 0.888 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.461 12.872 -25.492 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.284 5.284 3 C -0.121 4.121 4 C -0.004 4.004 5 C -0.096 4.096 6 C -0.248 4.248 7 C -0.055 4.055 8 O -0.063 6.063 9 C -0.140 4.140 10 C 0.380 3.620 11 O -0.420 6.420 12 N -0.356 5.356 13 C 0.046 3.954 14 H 0.066 0.934 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.167 4.167 18 C 0.065 3.935 19 H 0.075 0.925 20 N -0.395 5.395 21 C -0.345 4.345 22 H 0.085 0.915 23 C -0.248 4.248 24 N -0.633 5.633 25 Si 0.766 3.234 26 H -0.213 1.213 27 H -0.220 1.220 28 H -0.194 1.194 29 C -0.157 4.157 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.196 0.804 39 H 0.273 0.727 40 H 0.252 0.748 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.193 0.807 48 H 0.065 0.935 49 H 0.130 0.870 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.951 12.289 -24.662 30.885 hybrid contribution -1.326 1.249 -0.607 1.920 sum 12.625 13.537 -25.269 31.324 Atomic orbital electron populations 1.22293 0.86434 1.01846 1.01033 1.61787 1.08597 1.14640 1.43372 1.22409 1.00794 0.87817 1.01047 1.20440 0.89289 0.98840 0.91849 1.20611 0.96913 0.95291 0.96781 1.22000 0.91075 1.05024 1.06734 1.25286 1.02144 0.87401 0.90692 1.84062 1.23308 1.46131 1.52778 1.21616 0.81349 1.04270 1.06766 1.16859 0.86190 0.79689 0.79295 1.90885 1.13733 1.71504 1.65898 1.45857 1.10766 1.34413 1.44534 1.20851 0.95856 0.88323 0.90355 0.93431 1.21783 1.01378 0.94447 0.97362 1.21329 0.98361 0.98470 0.96493 1.22035 0.99740 0.98208 0.96723 1.20461 0.86678 0.92302 0.94039 0.92450 1.42983 1.28695 1.42520 1.25294 1.19099 1.04522 1.13258 0.97669 0.91510 1.25224 0.99389 1.02091 0.98083 1.69830 1.24121 1.46787 1.22600 0.85697 0.79112 0.80755 0.77845 1.21255 1.22031 1.19390 1.22006 0.98906 0.99614 0.95214 0.92797 0.94078 0.91194 0.91644 0.91374 0.94229 0.91051 0.92260 0.80427 0.72718 0.74795 0.93273 0.88989 0.90943 0.94934 0.89297 0.94143 0.80686 0.93512 0.86987 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.57 127.69 1.22 1.96 16 2 N -0.56 -14.18 5.01 -953.45 -4.78 -18.95 16 3 C 0.03 0.52 9.43 127.69 1.20 1.73 16 4 C 0.12 2.89 4.59 85.55 0.39 3.28 16 5 C -0.09 -2.03 4.76 -19.74 -0.09 -2.12 16 6 C -0.23 -3.13 10.10 22.07 0.22 -2.91 16 7 C 0.01 0.15 12.08 67.10 0.81 0.96 16 8 O -0.17 -3.04 10.40 -5.03 -0.05 -3.09 16 9 C -0.09 -2.15 7.13 24.07 0.17 -1.98 16 10 C 0.59 18.03 7.75 86.44 0.67 18.70 16 11 O -0.54 -20.65 14.66 -4.35 -0.06 -20.72 16 12 N -0.70 -18.23 5.07 -446.53 -2.27 -20.50 16 13 C 0.15 4.58 2.28 45.00 0.10 4.68 16 14 H 0.05 1.91 5.94 -2.39 -0.01 1.89 16 15 C -0.11 -3.10 5.50 30.60 0.17 -2.93 16 16 C -0.11 -3.46 5.77 30.59 0.18 -3.29 16 17 C -0.13 -4.08 5.61 30.59 0.17 -3.91 16 18 C 0.17 6.24 3.10 44.99 0.14 6.38 16 19 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 20 N -0.75 -35.71 4.08 -322.95 -1.32 -37.02 16 21 C -0.21 -12.36 10.41 84.03 0.87 -11.48 16 22 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 23 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 24 N -0.98 -64.57 13.97 21.65 0.30 -64.26 16 25 Si 0.94 49.77 27.74 68.60 1.90 51.68 16 26 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 27 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 28 H -0.27 -13.75 6.52 99.48 0.65 -13.10 16 29 C -0.12 -3.31 5.08 30.59 0.16 -3.16 16 30 H 0.05 1.45 8.12 -2.39 -0.02 1.43 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.07 1.28 6.59 -2.39 -0.02 1.26 16 35 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 2.02 6.96 -2.39 -0.02 2.01 16 37 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 38 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 39 H 0.26 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.42 8.01 8.36 -92.70 -0.77 7.24 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.03 1.29 7.60 -2.39 -0.02 1.27 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.36 17.55 3.92 -92.71 -0.36 17.18 16 48 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 49 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 50 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -79.13 396.05 0.33 -78.80 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.25 Total: 31.13 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.85 Total: 2.93 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -8.06 Total: -140.74 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.12 Total: -23.81 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 1.90 Total: 51.68 kcal Total: -79.13 0.33 -78.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981297526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.789 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds