Wall clock time and date at job start Tue Mar 31 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00115 * 2 1 4 4 C 1.46899 * 111.00111 * 123.95802 * 2 1 3 5 5 C 1.50707 * 109.46962 * 164.26490 * 4 2 1 6 6 C 1.40361 * 126.64225 * 103.83982 * 5 4 2 7 7 C 1.35135 * 107.11438 * 180.22226 * 6 5 4 8 8 O 1.33932 * 108.76314 * 359.78229 * 7 6 5 9 9 C 1.34915 * 109.38655 * 0.02562 * 8 7 6 10 10 C 1.46655 * 125.98637 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00093 * 174.93977 * 10 9 8 12 12 N 1.34780 * 120.00232 * 354.93526 * 10 9 8 13 13 C 1.46495 * 119.99946 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47701 * 35.00668 * 13 12 10 15 15 C 1.53005 * 109.47349 * 275.00077 * 13 12 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46804 * 60.00009 * 16 15 13 18 18 C 1.52996 * 109.47370 * 300.00446 * 17 16 15 19 19 H 1.09002 * 109.47158 * 299.99421 * 18 17 16 20 20 N 1.46509 * 109.46942 * 180.02562 * 18 17 16 21 21 C 1.36935 * 119.99784 * 84.99813 * 20 18 17 22 22 H 1.07988 * 120.00565 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99410 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99888 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00161 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47465 * 89.99849 * 25 23 21 27 27 H 1.48501 * 109.46705 * 209.99842 * 25 23 21 28 28 H 1.48498 * 109.46805 * 329.99453 * 25 23 21 29 29 C 1.52994 * 109.47652 * 59.99816 * 18 17 16 30 30 H 1.08995 * 109.46934 * 296.04203 * 1 2 3 31 31 H 1.08997 * 109.47298 * 56.04792 * 1 2 3 32 32 H 1.09007 * 109.47156 * 176.04427 * 1 2 3 33 33 H 1.08992 * 109.47291 * 182.25058 * 3 2 1 34 34 H 1.09005 * 109.47347 * 302.24766 * 3 2 1 35 35 H 1.09002 * 109.47328 * 62.24622 * 3 2 1 36 36 H 1.08996 * 109.47283 * 44.26553 * 4 2 1 37 37 H 1.08995 * 109.46747 * 284.26299 * 4 2 1 38 38 H 1.08004 * 126.44560 * 359.97438 * 6 5 4 39 39 H 1.08000 * 125.61744 * 179.77907 * 7 6 5 40 40 H 0.97004 * 119.99815 * 0.02562 * 12 10 9 41 41 H 1.09007 * 109.46610 * 60.00508 * 15 13 12 42 42 H 1.08989 * 109.47321 * 300.00589 * 15 13 12 43 43 H 1.09002 * 109.47372 * 300.00805 * 16 15 13 44 44 H 1.08989 * 109.47084 * 180.02562 * 16 15 13 45 45 H 1.09000 * 109.47120 * 179.97438 * 17 16 15 46 46 H 1.09005 * 109.46995 * 60.00130 * 17 16 15 47 47 H 0.96998 * 119.99679 * 264.99641 * 20 18 17 48 48 H 0.96996 * 119.99696 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.47162 * 59.99606 * 29 18 17 50 50 H 1.09002 * 109.47650 * 179.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.4523 -1.0738 0.9047 6 6 4.5493 -0.4421 1.5110 7 6 5.6653 -1.0208 1.0155 8 8 5.3065 -1.9730 0.1447 9 6 3.9606 -2.0228 0.0648 10 6 3.1805 -2.9332 -0.7798 11 8 1.9664 -2.9479 -0.6990 12 7 3.8083 -3.7535 -1.6455 13 6 3.0290 -4.6633 -2.4888 14 1 2.0915 -4.1842 -2.7707 15 6 2.7320 -5.9487 -1.7137 16 6 1.9176 -6.8986 -2.5942 17 6 2.7163 -7.2362 -3.8548 18 6 3.0134 -5.9509 -4.6298 19 1 2.0758 -5.4715 -4.9114 20 7 3.7776 -6.2744 -5.8372 21 6 3.1249 -6.6563 -6.9788 22 1 2.0469 -6.7195 -6.9891 23 6 3.8490 -6.9622 -8.1229 24 7 3.2218 -7.3298 -9.2201 25 14 5.7138 -6.8536 -8.1050 26 1 6.2821 -8.1629 -7.6955 27 1 6.2023 -6.5049 -9.4633 28 1 6.1393 -5.8063 -7.1420 29 6 3.8277 -5.0010 -3.7494 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3634 -1.0253 -0.0709 33 1 3.0842 1.3426 -0.0404 34 1 1.6138 1.9071 -0.8692 35 1 1.6789 1.8821 0.9094 36 1 1.4387 -1.6978 1.2370 37 1 1.8893 -0.1801 2.0504 38 1 4.5091 0.3590 2.2344 39 1 6.6795 -0.7586 1.2783 40 1 4.7761 -3.7420 -1.7097 41 1 2.1626 -5.7081 -0.8159 42 1 3.6695 -6.4278 -1.4318 43 1 0.9801 -6.4191 -2.8757 44 1 1.7057 -7.8140 -2.0419 45 1 2.1363 -7.9133 -4.4819 46 1 3.6539 -7.7156 -3.5734 47 1 4.7459 -6.2179 -5.8279 48 1 3.7278 -7.5432 -10.0197 49 1 4.7652 -5.4805 -3.4678 50 1 4.0397 -4.0855 -4.3017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981297528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:40 Heat of formation + Delta-G solvation = -8.653057 kcal Electronic energy + Delta-G solvation = -29483.695100 eV Core-core repulsion = 25512.699235 eV Total energy + Delta-G solvation = -3970.995864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.97436 -39.80366 -38.04967 -37.54614 -34.82126 -33.64055 -33.25206 -31.33246 -30.71272 -29.35370 -28.24885 -27.73340 -27.27676 -23.85531 -23.31383 -22.36575 -22.10681 -21.55243 -20.49030 -20.15523 -19.47312 -18.31922 -17.42505 -16.67023 -16.37721 -16.17217 -15.40277 -15.37715 -14.95633 -14.72380 -14.61692 -14.48540 -14.03620 -13.75934 -13.72639 -13.41713 -13.24974 -13.15116 -12.70707 -12.66037 -12.45462 -12.24137 -12.19891 -11.96382 -11.83848 -11.70553 -11.24943 -11.01444 -10.96619 -10.83643 -10.40822 -10.31191 -10.30697 -10.12121 -10.02619 -9.75661 -9.56967 -9.10721 -8.88686 -8.78938 -8.50861 -7.25374 -5.75026 -3.10527 0.87128 2.03653 2.48738 3.08896 3.18963 3.38269 3.40913 3.46279 3.89200 4.40664 4.44197 4.60481 4.67061 4.86175 4.96308 5.02524 5.03219 5.13022 5.17494 5.28047 5.30772 5.36274 5.46396 5.48825 5.53903 5.56923 5.63564 5.65517 5.68362 5.72385 5.80682 5.81355 5.84333 5.95659 6.02149 6.08946 6.23357 6.25836 6.37960 6.48643 6.51922 6.62033 6.67209 6.82318 6.86973 6.90999 7.05313 7.46994 8.01894 8.10598 8.44197 9.22611 9.95082 10.14858 11.43406 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002547 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.126926 B =10990.320033 C =11294.027323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.533 5.533 3 C 0.024 3.976 4 C 0.122 3.878 5 C -0.091 4.091 6 C -0.221 4.221 7 C -0.010 4.010 8 O -0.164 6.164 9 C -0.054 4.054 10 C 0.603 3.397 11 O -0.503 6.503 12 N -0.716 5.716 13 C 0.151 3.849 14 H 0.093 0.907 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.189 3.811 19 H 0.058 0.942 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 C -0.134 4.134 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.152 0.848 39 H 0.208 0.792 40 H 0.401 0.599 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.063 0.937 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 15.201 26.242 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.256 5.256 3 C -0.125 4.125 4 C -0.006 4.006 5 C -0.094 4.094 6 C -0.240 4.240 7 C -0.080 4.080 8 O -0.059 6.059 9 C -0.107 4.107 10 C 0.388 3.612 11 O -0.380 6.380 12 N -0.366 5.366 13 C 0.047 3.953 14 H 0.111 0.889 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.079 3.921 19 H 0.076 0.924 20 N -0.390 5.390 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.172 4.172 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.170 0.830 39 H 0.225 0.775 40 H 0.236 0.764 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.422 14.702 25.465 29.439 hybrid contribution 1.799 0.677 0.761 2.067 sum 3.221 15.379 26.226 30.572 Atomic orbital electron populations 1.22352 0.86573 1.02937 0.99946 1.61796 1.08120 1.13142 1.42556 1.22424 1.00889 0.88916 1.00228 1.20495 0.89674 0.99254 0.91131 1.20370 0.96546 0.95580 0.96913 1.21705 0.91583 1.04857 1.05889 1.24285 1.00413 0.90590 0.92721 1.84084 1.22667 1.47766 1.51373 1.22064 0.80066 1.03594 1.04942 1.16462 0.86432 0.78924 0.79386 1.90862 1.11754 1.67960 1.67378 1.46072 1.10797 1.39631 1.40114 1.21048 0.95610 0.89227 0.89422 0.88925 1.21901 1.00468 0.95345 0.98602 1.21476 0.98863 0.98383 0.96558 1.22254 0.99644 1.00341 0.95488 1.20067 0.94427 0.91851 0.85788 0.92416 1.42770 1.04462 1.82806 1.09007 1.19081 0.93287 1.37319 0.87380 0.89124 1.24675 0.97240 1.01563 0.95756 1.69704 1.34315 1.52480 1.01753 0.86547 0.87449 0.77776 0.76740 1.21163 1.21822 1.20362 1.22134 0.99249 1.00914 0.94945 0.96090 0.91386 0.90623 0.91537 0.91440 0.95954 0.88515 0.94066 0.83006 0.77505 0.76440 0.91995 0.92088 0.91906 0.92335 0.91374 0.92784 0.80738 0.93099 0.91829 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.54 60.06 0.57 0.86 16 2 N -0.53 -5.82 4.96 -252.73 -1.25 -7.07 16 3 C 0.02 0.21 9.40 60.06 0.56 0.78 16 4 C 0.12 1.26 4.58 -4.97 -0.02 1.24 16 5 C -0.09 -0.96 4.92 -104.43 -0.51 -1.48 16 6 C -0.22 -1.75 10.49 -39.89 -0.42 -2.17 16 7 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 8 O -0.16 -1.65 10.41 4.99 0.05 -1.60 16 9 C -0.05 -0.63 7.12 -36.80 -0.26 -0.90 16 10 C 0.60 8.14 7.75 -12.86 -0.10 8.04 16 11 O -0.50 -7.89 14.72 5.19 0.08 -7.81 16 12 N -0.72 -8.83 5.07 -55.12 -0.28 -9.11 16 13 C 0.15 2.06 2.45 -67.93 -0.17 1.89 16 14 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 15 C -0.12 -1.62 5.49 -26.73 -0.15 -1.77 16 16 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 17 C -0.14 -2.32 5.50 -26.73 -0.15 -2.47 16 18 C 0.19 3.53 2.77 -67.93 -0.19 3.34 16 19 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 20 N -0.75 -17.40 4.93 -53.43 -0.26 -17.67 16 21 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 24 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 25 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 29 C -0.13 -2.02 4.86 -26.73 -0.13 -2.15 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.79 8.09 -51.92 -0.42 0.37 16 33 H 0.07 0.60 7.16 -51.93 -0.37 0.23 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.17 8.13 -51.93 -0.42 -0.25 16 36 H 0.10 1.12 6.94 -51.93 -0.36 0.76 16 37 H 0.04 0.36 8.05 -51.93 -0.42 -0.06 16 38 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.40 4.26 8.37 -40.82 -0.34 3.92 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.76 8.14 -51.94 -0.42 0.33 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.74 8.14 -51.94 -0.42 0.32 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -33.21 401.41 -9.04 -42.24 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.47 Total: 9.39 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.01 Total: -3.14 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -1.02 Total: -62.47 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.13 Total: -9.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.21 -9.04 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981297528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.590 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds