Wall clock time and date at job start Tue Mar 31 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00115 * 2 1 4 4 C 1.46899 * 111.00111 * 123.95802 * 2 1 3 5 5 C 1.50707 * 109.46962 * 164.26490 * 4 2 1 6 6 C 1.40361 * 126.64225 * 103.83982 * 5 4 2 7 7 C 1.35135 * 107.11438 * 180.22226 * 6 5 4 8 8 O 1.33932 * 108.76314 * 359.78229 * 7 6 5 9 9 C 1.34915 * 109.38655 * 0.02562 * 8 7 6 10 10 C 1.46655 * 125.98637 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00093 * 174.93977 * 10 9 8 12 12 N 1.34780 * 120.00232 * 354.93526 * 10 9 8 13 13 C 1.46495 * 119.99946 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47701 * 35.00668 * 13 12 10 15 15 C 1.53005 * 109.47349 * 275.00077 * 13 12 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46804 * 60.00009 * 16 15 13 18 18 C 1.52996 * 109.47370 * 300.00446 * 17 16 15 19 19 H 1.09002 * 109.47158 * 299.99421 * 18 17 16 20 20 N 1.46509 * 109.46942 * 180.02562 * 18 17 16 21 21 C 1.36935 * 119.99784 * 84.99813 * 20 18 17 22 22 H 1.07988 * 120.00565 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99410 * 179.97438 * 21 20 18 24 24 N 1.31626 * 119.99888 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00161 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47465 * 89.99849 * 25 23 21 27 27 H 1.48501 * 109.46705 * 209.99842 * 25 23 21 28 28 H 1.48498 * 109.46805 * 329.99453 * 25 23 21 29 29 C 1.52994 * 109.47652 * 59.99816 * 18 17 16 30 30 H 1.08995 * 109.46934 * 296.04203 * 1 2 3 31 31 H 1.08997 * 109.47298 * 56.04792 * 1 2 3 32 32 H 1.09007 * 109.47156 * 176.04427 * 1 2 3 33 33 H 1.08992 * 109.47291 * 182.25058 * 3 2 1 34 34 H 1.09005 * 109.47347 * 302.24766 * 3 2 1 35 35 H 1.09002 * 109.47328 * 62.24622 * 3 2 1 36 36 H 1.08996 * 109.47283 * 44.26553 * 4 2 1 37 37 H 1.08995 * 109.46747 * 284.26299 * 4 2 1 38 38 H 1.08004 * 126.44560 * 359.97438 * 6 5 4 39 39 H 1.08000 * 125.61744 * 179.77907 * 7 6 5 40 40 H 0.97004 * 119.99815 * 0.02562 * 12 10 9 41 41 H 1.09007 * 109.46610 * 60.00508 * 15 13 12 42 42 H 1.08989 * 109.47321 * 300.00589 * 15 13 12 43 43 H 1.09002 * 109.47372 * 300.00805 * 16 15 13 44 44 H 1.08989 * 109.47084 * 180.02562 * 16 15 13 45 45 H 1.09000 * 109.47120 * 179.97438 * 17 16 15 46 46 H 1.09005 * 109.46995 * 60.00130 * 17 16 15 47 47 H 0.96998 * 119.99679 * 264.99641 * 20 18 17 48 48 H 0.96996 * 119.99696 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.47162 * 59.99606 * 29 18 17 50 50 H 1.09002 * 109.47650 * 179.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.4523 -1.0738 0.9047 6 6 4.5493 -0.4421 1.5110 7 6 5.6653 -1.0208 1.0155 8 8 5.3065 -1.9730 0.1447 9 6 3.9606 -2.0228 0.0648 10 6 3.1805 -2.9332 -0.7798 11 8 1.9664 -2.9479 -0.6990 12 7 3.8083 -3.7535 -1.6455 13 6 3.0290 -4.6633 -2.4888 14 1 2.0915 -4.1842 -2.7707 15 6 2.7320 -5.9487 -1.7137 16 6 1.9176 -6.8986 -2.5942 17 6 2.7163 -7.2362 -3.8548 18 6 3.0134 -5.9509 -4.6298 19 1 2.0758 -5.4715 -4.9114 20 7 3.7776 -6.2744 -5.8372 21 6 3.1249 -6.6563 -6.9788 22 1 2.0469 -6.7195 -6.9891 23 6 3.8490 -6.9622 -8.1229 24 7 3.2218 -7.3298 -9.2201 25 14 5.7138 -6.8536 -8.1050 26 1 6.2821 -8.1629 -7.6955 27 1 6.2023 -6.5049 -9.4633 28 1 6.1393 -5.8063 -7.1420 29 6 3.8277 -5.0010 -3.7494 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3634 -1.0253 -0.0709 33 1 3.0842 1.3426 -0.0404 34 1 1.6138 1.9071 -0.8692 35 1 1.6789 1.8821 0.9094 36 1 1.4387 -1.6978 1.2370 37 1 1.8893 -0.1801 2.0504 38 1 4.5091 0.3590 2.2344 39 1 6.6795 -0.7586 1.2783 40 1 4.7761 -3.7420 -1.7097 41 1 2.1626 -5.7081 -0.8159 42 1 3.6695 -6.4278 -1.4318 43 1 0.9801 -6.4191 -2.8757 44 1 1.7057 -7.8140 -2.0419 45 1 2.1363 -7.9133 -4.4819 46 1 3.6539 -7.7156 -3.5734 47 1 4.7459 -6.2179 -5.8279 48 1 3.7278 -7.5432 -10.0197 49 1 4.7652 -5.4805 -3.4678 50 1 4.0397 -4.0855 -4.3017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981297528.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:39 Heat of formation + Delta-G solvation = -32.586237 kcal Electronic energy + Delta-G solvation = -29484.732920 eV Core-core repulsion = 25512.699235 eV Total energy + Delta-G solvation = -3972.033685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.66488 -40.89730 -39.26933 -38.37089 -36.34217 -34.89509 -34.18141 -33.26659 -31.57853 -30.56201 -29.67643 -28.44614 -28.10948 -25.44297 -24.54669 -23.30093 -23.07982 -22.61024 -21.64683 -21.25307 -20.65681 -19.65084 -18.94298 -17.46769 -17.37260 -17.10880 -16.46007 -16.16283 -16.15370 -16.07539 -15.64344 -15.48076 -15.39324 -15.07272 -14.98603 -14.79570 -14.48359 -14.16938 -13.84921 -13.72496 -13.49806 -13.38282 -13.15571 -13.01712 -12.87989 -12.71189 -12.58768 -12.43808 -12.39077 -12.18552 -11.98810 -11.80821 -11.69854 -11.54689 -11.44142 -11.02644 -10.89810 -10.77828 -10.13300 -9.54039 -9.29985 -9.24738 -8.00250 -5.33881 0.09007 1.38886 1.42316 1.43161 1.50350 1.73137 2.15317 2.27357 2.50585 3.17074 3.30970 3.45247 3.69664 3.78836 3.84680 3.93100 4.02048 4.15677 4.26693 4.27875 4.34880 4.37936 4.48794 4.50632 4.53144 4.55542 4.56649 4.64664 4.69500 4.75202 4.76112 4.94219 4.98285 5.00262 5.03578 5.05253 5.12478 5.15505 5.20562 5.35405 5.39295 5.44680 5.50056 5.62231 5.79965 5.88821 6.07669 6.15583 6.23839 6.53569 7.10044 7.13860 7.85508 8.05987 9.21550 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002547 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.126926 B =10990.320033 C =11294.027323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.557 5.557 3 C 0.027 3.973 4 C 0.124 3.876 5 C -0.092 4.092 6 C -0.229 4.229 7 C 0.010 3.990 8 O -0.171 6.171 9 C -0.089 4.089 10 C 0.600 3.400 11 O -0.536 6.536 12 N -0.709 5.709 13 C 0.161 3.839 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.128 4.128 18 C 0.181 3.819 19 H 0.036 0.964 20 N -0.750 5.750 21 C -0.227 4.227 22 H 0.053 0.947 23 C -0.068 4.068 24 N -0.987 5.987 25 Si 0.958 3.042 26 H -0.278 1.278 27 H -0.298 1.298 28 H -0.248 1.248 29 C -0.120 4.120 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.178 0.822 39 H 0.253 0.747 40 H 0.412 0.588 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.366 0.634 48 H 0.257 0.743 49 H 0.084 0.916 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 16.742 29.286 34.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.281 5.281 3 C -0.121 4.121 4 C -0.004 4.004 5 C -0.096 4.096 6 C -0.248 4.248 7 C -0.059 4.059 8 O -0.067 6.067 9 C -0.141 4.141 10 C 0.387 3.613 11 O -0.414 6.414 12 N -0.359 5.359 13 C 0.056 3.944 14 H 0.089 0.911 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.168 4.168 18 C 0.073 3.927 19 H 0.054 0.946 20 N -0.393 5.393 21 C -0.358 4.358 22 H 0.071 0.929 23 C -0.259 4.259 24 N -0.638 5.638 25 Si 0.785 3.215 26 H -0.204 1.204 27 H -0.225 1.225 28 H -0.173 1.173 29 C -0.158 4.158 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.195 0.805 39 H 0.269 0.731 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.200 0.800 48 H 0.066 0.934 49 H 0.102 0.898 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.433 16.264 28.575 33.177 hybrid contribution 0.785 0.270 -0.108 0.837 sum 5.218 16.534 28.468 33.332 Atomic orbital electron populations 1.22294 0.86249 1.02049 1.00874 1.61769 1.08716 1.14392 1.43244 1.22402 1.00667 0.87984 1.01002 1.20439 0.89586 0.98589 0.91739 1.20647 0.97222 0.95244 0.96439 1.22009 0.90704 1.05622 1.06515 1.25239 1.02134 0.88312 0.90264 1.84072 1.21610 1.48758 1.52231 1.21706 0.80988 1.04857 1.06560 1.16709 0.86315 0.78919 0.79362 1.90842 1.13137 1.68984 1.68446 1.45895 1.11160 1.39238 1.39622 1.20776 0.94633 0.89783 0.89217 0.91093 1.21814 1.00981 0.94537 0.98024 1.21404 0.98194 0.99525 0.95377 1.22081 1.00105 0.98515 0.96099 1.20262 0.93805 0.93481 0.85153 0.94594 1.42739 1.04861 1.82724 1.08986 1.19005 0.91953 1.35812 0.89055 0.92875 1.25539 1.02913 1.02134 0.95297 1.69900 1.36510 1.54684 1.02669 0.85366 0.80519 0.78711 0.76925 1.20408 1.22543 1.17271 1.21932 0.99471 0.99742 0.94685 0.94506 0.91100 0.92356 0.91702 0.91390 0.94455 0.90579 0.92318 0.80498 0.73120 0.75216 0.91916 0.90465 0.92596 0.90412 0.94254 0.91792 0.80030 0.93429 0.89777 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.54 127.69 1.22 1.85 16 2 N -0.56 -11.88 4.96 -953.49 -4.73 -16.61 16 3 C 0.03 0.45 9.40 127.69 1.20 1.65 16 4 C 0.12 2.48 4.58 85.56 0.39 2.87 16 5 C -0.09 -1.81 4.92 -19.74 -0.10 -1.91 16 6 C -0.23 -2.89 10.49 22.07 0.23 -2.66 16 7 C 0.01 0.10 12.08 67.10 0.81 0.91 16 8 O -0.17 -3.01 10.41 -5.06 -0.05 -3.07 16 9 C -0.09 -1.99 7.12 24.07 0.17 -1.82 16 10 C 0.60 16.00 7.75 86.44 0.67 16.67 16 11 O -0.54 -17.18 14.72 -4.33 -0.06 -17.25 16 12 N -0.71 -16.67 5.07 -446.52 -2.27 -18.94 16 13 C 0.16 4.26 2.45 45.00 0.11 4.37 16 14 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 15 C -0.12 -2.80 5.49 30.60 0.17 -2.64 16 16 C -0.11 -2.85 5.92 30.60 0.18 -2.67 16 17 C -0.13 -4.29 5.50 30.59 0.17 -4.12 16 18 C 0.18 6.80 2.77 44.99 0.12 6.92 16 19 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 20 N -0.75 -34.70 4.93 -322.94 -1.59 -36.29 16 21 C -0.23 -13.06 10.41 84.03 0.87 -12.18 16 22 H 0.05 3.38 8.06 -2.92 -0.02 3.36 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 24 N -0.99 -64.13 13.97 21.65 0.30 -63.82 16 25 Si 0.96 45.47 27.74 68.60 1.90 47.37 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 29 C -0.12 -3.46 4.86 30.59 0.15 -3.31 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.06 1.29 8.09 -2.38 -0.02 1.27 16 33 H 0.06 1.06 7.16 -2.39 -0.02 1.04 16 34 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.04 0.49 8.13 -2.39 -0.02 0.47 16 36 H 0.08 1.82 6.94 -2.39 -0.02 1.80 16 37 H 0.06 0.92 8.05 -2.39 -0.02 0.91 16 38 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.25 0.11 8.06 -2.91 -0.02 0.08 16 40 H 0.41 7.93 8.37 -92.71 -0.78 7.15 16 41 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.37 15.99 5.66 -92.71 -0.52 15.47 16 48 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 49 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -75.29 401.41 -0.08 -75.37 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.42 Total: 32.87 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.84 Total: 0.36 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -8.29 Total: -135.66 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.12 Total: -20.31 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -75.29 -0.08 -75.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981297528.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.787 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds