Wall clock time and date at job start Tue Mar 31 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 110.99910 * 2 1 4 4 C 1.46904 * 111.00058 * 123.94750 * 2 1 3 5 5 C 1.50702 * 109.47197 * 164.26900 * 4 2 1 6 6 C 1.40369 * 126.64405 * 103.85378 * 5 4 2 7 7 C 1.35128 * 107.10936 * 180.29738 * 6 5 4 8 8 O 1.33932 * 108.76914 * 359.74798 * 7 6 5 9 9 C 1.34906 * 109.38541 * 359.97438 * 8 7 6 10 10 C 1.46658 * 125.98764 * 180.02562 * 9 8 7 11 11 O 1.21694 * 120.00097 * 174.93879 * 10 9 8 12 12 N 1.34776 * 120.00006 * 354.93970 * 10 9 8 13 13 C 1.46494 * 120.00170 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47352 * 34.99501 * 13 12 10 15 15 C 1.53005 * 109.47147 * 274.99879 * 13 12 10 16 16 C 1.53000 * 109.47088 * 299.99918 * 15 13 12 17 17 C 1.53005 * 109.46942 * 300.00018 * 16 15 13 18 18 C 1.52997 * 109.47446 * 60.00045 * 17 16 15 19 19 H 1.08999 * 109.47074 * 59.99345 * 18 17 16 20 20 N 1.46497 * 109.47446 * 179.97438 * 18 17 16 21 21 C 1.36939 * 119.99992 * 275.00136 * 20 18 17 22 22 H 1.07999 * 119.99867 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99771 * 179.72488 * 21 20 18 24 24 N 1.31617 * 120.00195 * 0.27420 * 23 21 20 25 25 Si 1.86804 * 119.99662 * 180.27451 * 23 21 20 26 26 H 1.48498 * 109.46988 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46877 * 120.00057 * 25 23 21 28 28 H 1.48496 * 109.47009 * 239.99762 * 25 23 21 29 29 C 1.53000 * 109.47013 * 299.99912 * 18 17 16 30 30 H 1.08993 * 109.47516 * 296.05151 * 1 2 3 31 31 H 1.08998 * 109.46777 * 56.05265 * 1 2 3 32 32 H 1.09006 * 109.47066 * 176.05065 * 1 2 3 33 33 H 1.09000 * 109.47548 * 182.24447 * 3 2 1 34 34 H 1.09002 * 109.46740 * 302.23490 * 3 2 1 35 35 H 1.08998 * 109.47419 * 62.24033 * 3 2 1 36 36 H 1.09003 * 109.47023 * 44.26879 * 4 2 1 37 37 H 1.08999 * 109.47351 * 284.27401 * 4 2 1 38 38 H 1.07993 * 126.44068 * 0.04350 * 6 5 4 39 39 H 1.08004 * 125.61467 * 179.70883 * 7 6 5 40 40 H 0.97005 * 120.00171 * 359.97438 * 12 10 9 41 41 H 1.09009 * 109.47027 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47151 * 59.99952 * 15 13 12 43 43 H 1.08997 * 109.47209 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.47063 * 59.99748 * 16 15 13 45 45 H 1.09002 * 109.47021 * 299.99756 * 17 16 15 46 46 H 1.08998 * 109.46773 * 180.02562 * 17 16 15 47 47 H 0.97002 * 119.99962 * 95.00193 * 20 18 17 48 48 H 0.97000 * 120.00252 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.47314 * 179.97438 * 29 18 17 50 50 H 1.08996 * 109.47435 * 299.99842 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4522 -1.0736 0.9050 6 6 4.5492 -0.4419 1.5116 7 6 5.6652 -1.0195 1.0148 8 8 5.3065 -1.9715 0.1437 9 6 3.9607 -2.0230 0.0657 10 6 3.1806 -2.9344 -0.7778 11 8 1.9666 -2.9507 -0.6954 12 7 3.8082 -3.7541 -1.6443 13 6 3.0290 -4.6641 -2.4873 14 1 2.0908 -4.1856 -2.7682 15 6 2.7336 -5.9499 -1.7124 16 6 4.0504 -6.6218 -1.3181 17 6 4.8488 -6.9583 -2.5791 18 6 5.1443 -5.6726 -3.3540 19 1 5.7240 -4.9954 -2.7268 20 7 5.9093 -5.9948 -4.5612 21 6 7.2720 -6.1135 -4.4968 22 1 7.7828 -5.9692 -3.5562 23 6 7.9963 -6.4244 -5.6395 24 7 7.3738 -6.5997 -6.7858 25 14 9.8545 -6.5939 -5.5501 26 1 10.3073 -6.3495 -4.1571 27 1 10.2470 -7.9645 -5.9655 28 1 10.4862 -5.6019 -6.4567 29 6 3.8275 -5.0008 -3.7484 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0842 1.3427 -0.0402 34 1 1.6138 1.9070 -0.8693 35 1 1.6787 1.8822 0.9094 36 1 1.4386 -1.6976 1.2373 37 1 1.8891 -0.1799 2.0506 38 1 4.5088 0.3583 2.2357 39 1 6.6795 -0.7564 1.2766 40 1 4.7760 -3.7409 -1.7103 41 1 2.1533 -6.6269 -2.3395 42 1 2.1647 -5.7102 -0.8140 43 1 3.8399 -7.5375 -0.7657 44 1 4.6302 -5.9446 -0.6909 45 1 4.2690 -7.6355 -3.2064 46 1 5.7867 -7.4373 -2.2982 47 1 5.4505 -6.1239 -5.4060 48 1 7.8799 -6.8173 -7.5842 49 1 4.0379 -4.0845 -4.3001 50 1 3.2476 -5.6778 -4.3756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981297529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:43 Heat of formation + Delta-G solvation = -10.154913 kcal Electronic energy + Delta-G solvation = -29965.665634 eV Core-core repulsion = 25994.604644 eV Total energy + Delta-G solvation = -3971.060990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.82963 -39.85551 -37.95827 -37.43590 -34.48332 -33.49293 -32.92700 -31.15159 -30.59963 -29.35530 -27.87252 -27.69258 -27.24650 -23.86017 -23.44450 -22.28352 -22.04803 -21.49988 -20.91503 -19.89914 -18.78080 -18.22634 -17.12243 -16.54404 -16.30538 -15.50260 -15.43583 -15.30028 -15.24900 -14.71098 -14.59687 -14.35741 -14.14050 -13.57123 -13.44996 -13.39133 -13.11307 -13.02821 -12.63992 -12.42585 -12.38924 -12.04164 -11.91215 -11.82059 -11.79592 -11.69306 -11.61807 -10.99010 -10.89188 -10.74374 -10.36011 -10.15760 -10.14297 -10.06130 -9.92363 -9.72344 -9.50381 -8.98174 -8.86367 -8.64360 -8.45466 -6.95759 -5.76868 -3.05514 1.01660 2.16907 2.65498 3.23273 3.36286 3.42676 3.48304 3.50516 3.95482 4.52247 4.56951 4.59063 4.79896 5.01515 5.06809 5.10749 5.13317 5.19195 5.21465 5.26662 5.37926 5.43127 5.51239 5.54853 5.61009 5.70891 5.71852 5.75197 5.80855 5.81802 5.83458 5.91078 6.00274 6.09528 6.13428 6.15532 6.28273 6.32620 6.53146 6.58370 6.65094 6.74525 6.75723 6.88276 6.92520 6.97082 7.11298 7.64399 7.70172 8.24811 8.41668 9.52966 10.10719 10.45273 11.45843 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.002877 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.055359 B = 9730.180217 C =10532.622194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.532 5.532 3 C 0.024 3.976 4 C 0.123 3.877 5 C -0.094 4.094 6 C -0.223 4.223 7 C -0.008 4.008 8 O -0.160 6.160 9 C -0.052 4.052 10 C 0.603 3.397 11 O -0.512 6.512 12 N -0.708 5.708 13 C 0.153 3.847 14 H 0.087 0.913 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.180 3.820 19 H 0.042 0.958 20 N -0.724 5.724 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.134 4.134 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.151 0.849 39 H 0.208 0.792 40 H 0.406 0.594 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.070 0.930 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 12.928 17.931 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.256 5.256 3 C -0.125 4.125 4 C -0.004 4.004 5 C -0.097 4.097 6 C -0.243 4.243 7 C -0.078 4.078 8 O -0.055 6.055 9 C -0.105 4.105 10 C 0.388 3.612 11 O -0.389 6.389 12 N -0.360 5.360 13 C 0.049 3.951 14 H 0.105 0.895 15 C -0.165 4.165 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.070 3.930 19 H 0.059 0.941 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.172 4.172 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.169 0.831 39 H 0.225 0.775 40 H 0.243 0.757 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.499 12.472 17.379 24.286 hybrid contribution 1.314 0.435 0.580 1.501 sum -10.185 12.906 17.959 24.348 Atomic orbital electron populations 1.22339 0.86770 1.02796 0.99850 1.61800 1.07944 1.13139 1.42697 1.22423 1.01024 0.88888 1.00117 1.20476 0.89793 0.99127 0.90995 1.20327 0.96416 0.95770 0.97182 1.21677 0.91591 1.04983 1.06021 1.24305 1.00441 0.90494 0.92523 1.84124 1.22594 1.47620 1.51147 1.22067 0.80164 1.03459 1.04845 1.16471 0.86363 0.78938 0.79425 1.90828 1.11823 1.68446 1.67811 1.46137 1.11299 1.38992 1.39598 1.20996 0.94978 0.89229 0.89937 0.89503 1.21903 0.97960 0.96387 1.00294 1.21510 0.95997 0.99509 0.98403 1.22278 0.99417 1.00416 0.95547 1.20149 0.90193 0.93092 0.89567 0.94055 1.42426 1.03915 1.84327 1.05814 1.19269 0.83116 1.39838 0.94566 0.91189 1.24734 0.97861 1.02745 0.95645 1.69667 1.34304 1.55055 0.99049 0.86152 0.85805 0.77272 0.77184 1.20575 1.21920 1.21915 1.22132 0.97681 1.01694 0.95732 0.96152 0.91514 0.90713 0.91427 0.91528 0.95995 0.88576 0.94148 0.83087 0.77516 0.75706 0.91050 0.92048 0.92857 0.92641 0.92542 0.92114 0.78253 0.93585 0.91162 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.54 60.06 0.57 0.87 16 2 N -0.53 -6.04 4.97 -252.72 -1.25 -7.29 16 3 C 0.02 0.22 9.40 60.06 0.56 0.79 16 4 C 0.12 1.37 4.58 -4.97 -0.02 1.34 16 5 C -0.09 -1.10 4.92 -104.43 -0.51 -1.62 16 6 C -0.22 -2.08 10.49 -39.89 -0.42 -2.49 16 7 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 8 O -0.16 -1.98 10.41 5.02 0.05 -1.92 16 9 C -0.05 -0.70 7.12 -36.80 -0.26 -0.96 16 10 C 0.60 8.86 7.75 -12.86 -0.10 8.76 16 11 O -0.51 -8.28 14.72 5.19 0.08 -8.20 16 12 N -0.71 -10.03 4.23 -55.12 -0.23 -10.26 16 13 C 0.15 2.17 2.78 -67.93 -0.19 1.98 16 14 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 15 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 16 C -0.12 -1.66 5.77 -26.73 -0.15 -1.81 16 17 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 18 C 0.18 3.40 2.60 -67.93 -0.18 3.22 16 19 H 0.04 0.79 6.44 -51.93 -0.33 0.46 16 20 N -0.72 -17.63 5.12 -53.43 -0.27 -17.91 16 21 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 25 Si 0.90 22.22 29.55 -169.99 -5.02 17.19 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 29 C -0.13 -2.14 5.08 -26.73 -0.14 -2.28 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.07 0.67 7.16 -51.93 -0.37 0.29 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.18 8.13 -51.93 -0.42 -0.25 16 36 H 0.10 1.18 6.94 -51.93 -0.36 0.82 16 37 H 0.04 0.38 8.05 -51.93 -0.42 -0.04 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.21 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.41 5.79 6.63 -40.82 -0.27 5.52 16 41 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.80 7.60 -51.93 -0.39 0.40 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 400.10 15.07 6.03 6.03 Total: -1.00 -31.64 400.10 -9.24 -40.88 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.32 Total: 12.04 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.02 Total: -3.36 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.04 Total: -62.66 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.13 Total: -10.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.64 -9.24 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981297529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.727 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds