Wall clock time and date at job start Tue Mar 31 2020 18:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00335 * 2 1 4 4 C 1.34775 * 119.99959 * 180.02562 * 2 1 3 5 5 O 1.21291 * 119.99961 * 0.02562 * 4 2 1 6 6 C 1.50691 * 120.00441 * 180.02562 * 4 2 1 7 7 H 1.09001 * 115.56436 * 325.47738 * 6 4 2 8 8 C 1.53007 * 117.50550 * 179.78154 * 6 4 2 9 9 C 1.52998 * 60.03259 * 252.52429 * 8 6 4 10 10 H 1.09007 * 117.49538 * 252.49375 * 9 8 6 11 11 C 1.50700 * 117.50166 * 107.49788 * 9 8 6 12 12 O 1.21280 * 120.00380 * 244.41507 * 11 9 8 13 13 N 1.34785 * 119.99597 * 64.41582 * 11 9 8 14 14 C 1.47188 * 135.99531 * 359.63233 * 13 11 9 15 15 C 1.53182 * 87.74307 * 153.43732 * 14 13 11 16 16 C 1.47162 * 135.99461 * 179.97438 * 13 11 9 17 17 C 1.52514 * 114.07995 * 139.64290 * 15 14 13 18 18 C 1.53194 * 109.36425 * 190.06740 * 17 15 14 19 19 C 1.53146 * 109.35536 * 301.11706 * 18 17 15 20 20 N 1.46898 * 109.09435 * 56.54305 * 19 18 17 21 21 C 1.36945 * 120.69859 * 124.59240 * 20 19 18 22 22 H 1.07998 * 119.99738 * 330.23331 * 21 20 19 23 23 C 1.38811 * 119.99731 * 150.23193 * 21 20 19 24 24 N 1.31620 * 120.00243 * 342.31631 * 23 21 20 25 25 Si 1.86797 * 119.99807 * 162.31999 * 23 21 20 26 26 H 1.48501 * 109.47011 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47257 * 119.99899 * 25 23 21 28 28 H 1.48502 * 109.47268 * 239.99973 * 25 23 21 29 29 C 1.47145 * 118.60306 * 304.56837 * 20 19 18 30 30 H 1.09000 * 109.47419 * 269.99764 * 1 2 3 31 31 H 1.09004 * 109.46988 * 30.00013 * 1 2 3 32 32 H 1.08996 * 109.47288 * 149.99385 * 1 2 3 33 33 H 1.08998 * 109.47562 * 270.00123 * 3 2 1 34 34 H 1.09001 * 109.46867 * 30.00120 * 3 2 1 35 35 H 1.08999 * 109.47218 * 149.99488 * 3 2 1 36 36 H 1.08998 * 117.49827 * 145.01518 * 8 6 4 37 37 H 1.09006 * 117.49139 * 0.02714 * 8 6 4 38 38 H 1.09003 * 113.49130 * 268.13137 * 14 13 11 39 39 H 1.08999 * 113.49314 * 38.64626 * 14 13 11 40 40 H 1.08997 * 113.48931 * 321.35956 * 16 13 11 41 41 H 1.08999 * 113.48139 * 91.86427 * 16 13 11 42 42 H 1.09002 * 109.49190 * 310.03627 * 17 15 14 43 43 H 1.08998 * 109.48228 * 70.10493 * 17 15 14 44 44 H 1.08992 * 109.49265 * 181.14522 * 18 17 15 45 45 H 1.09003 * 109.50854 * 61.08482 * 18 17 15 46 46 H 1.09003 * 109.53506 * 296.65583 * 19 18 17 47 47 H 1.09004 * 109.60041 * 176.46761 * 19 18 17 48 48 H 0.96994 * 120.00201 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.63482 * 291.53159 * 29 20 19 50 50 H 1.08996 * 109.63517 * 170.91685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0015 6 6 3.6458 -1.1673 0.0001 7 1 4.1164 -0.3568 -0.5565 8 6 4.3523 -2.5245 0.0046 9 6 4.3520 -1.6588 1.2661 10 1 5.2872 -1.1717 1.5425 11 6 3.4873 -2.1058 2.4166 12 8 2.5522 -1.4212 2.7741 13 7 3.7531 -3.2665 3.0482 14 6 4.7519 -4.3394 2.9154 15 6 4.5509 -4.6283 4.4062 16 6 3.1684 -4.0196 4.1691 17 6 4.5288 -6.1129 4.7549 18 6 4.0759 -6.2867 6.2080 19 6 5.0363 -5.5330 7.1326 20 7 5.0890 -4.1229 6.7243 21 6 4.8147 -3.1247 7.6209 22 1 4.1273 -3.3036 8.4344 23 6 5.4202 -1.8831 7.4840 24 7 6.4948 -1.7540 6.7350 25 14 4.7099 -0.3957 8.3628 26 1 3.5089 -0.8038 9.1349 27 1 5.7271 0.1649 9.2883 28 1 4.3288 0.6345 7.3634 29 6 5.4433 -3.8054 5.3319 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 2.3793 1.5834 -1.0276 34 1 1.6085 2.0283 0.5139 35 1 3.1499 1.1383 0.5139 36 1 5.2875 -2.6069 -0.5491 37 1 3.7270 -3.4173 0.0067 38 1 4.4301 -5.1549 2.2676 39 1 5.7504 -3.9759 2.6725 40 1 2.8267 -3.3856 4.9872 41 1 2.4200 -4.7489 3.8589 42 1 3.8350 -6.6316 4.0933 43 1 5.5285 -6.5298 4.6333 44 1 4.0788 -7.3457 6.4657 45 1 3.0688 -5.8865 6.3257 46 1 6.0318 -5.9711 7.0594 47 1 4.6828 -5.6016 8.1614 48 1 6.9181 -0.8865 6.6396 49 1 6.4884 -4.0582 5.1531 50 1 5.2832 -2.7434 5.1462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982012153.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:58 Heat of formation + Delta-G solvation = 26.337567 kcal Electronic energy + Delta-G solvation = -30841.018490 eV Core-core repulsion = 26871.539933 eV Total energy + Delta-G solvation = -3969.478557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.72736 -39.94244 -38.09566 -36.07426 -35.69233 -35.39320 -32.91620 -30.41134 -29.74986 -28.52360 -26.81938 -26.29464 -25.63252 -25.33825 -23.51118 -23.12610 -22.25484 -20.66478 -19.55415 -18.46923 -17.87891 -17.49684 -16.68374 -16.32834 -16.06624 -15.85969 -15.37793 -14.95734 -14.83991 -14.63739 -14.04322 -13.65893 -13.57498 -13.27157 -13.10718 -12.98534 -12.79725 -12.73510 -12.66303 -12.52051 -12.23699 -12.11367 -11.98130 -11.90803 -11.54247 -11.25869 -10.93049 -10.77020 -10.71747 -10.68658 -10.42503 -10.22121 -10.05492 -9.90066 -9.87801 -9.72149 -9.40814 -9.24945 -8.70527 -8.46897 -8.22205 -6.65850 -5.80574 -3.22489 2.42720 2.90036 2.97904 3.21176 3.39429 3.48255 3.49722 3.72183 4.33496 4.49592 4.54776 4.61769 4.74929 4.78956 4.99788 5.08555 5.15095 5.21681 5.30623 5.41491 5.46693 5.50506 5.53494 5.56796 5.59057 5.61054 5.71858 5.75581 5.77225 5.79827 5.87186 5.92354 5.99244 6.20858 6.25452 6.33617 6.40540 6.43893 6.53394 6.62035 6.77808 6.85852 6.99666 7.27541 7.29886 7.56342 7.82233 8.18496 8.19390 8.44963 8.53884 9.20520 9.84172 10.41631 11.28646 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003982 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.115570 B = 7030.046849 C = 8343.213334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.614 5.614 3 C 0.081 3.919 4 C 0.554 3.446 5 O -0.538 6.538 6 C -0.169 4.169 7 H 0.131 0.869 8 C -0.129 4.129 9 C -0.146 4.146 10 H 0.142 0.858 11 C 0.572 3.428 12 O -0.537 6.537 13 N -0.629 5.629 14 C 0.107 3.893 15 C -0.112 4.112 16 C 0.121 3.879 17 C -0.091 4.091 18 C -0.134 4.134 19 C 0.144 3.856 20 N -0.589 5.589 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.009 3.991 24 N -0.900 5.900 25 Si 0.896 3.104 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.288 1.288 29 C 0.204 3.796 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.053 0.947 48 H 0.252 0.748 49 H 0.025 0.975 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -0.835 -15.988 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.348 5.348 3 C -0.062 4.062 4 C 0.342 3.658 5 O -0.415 6.415 6 C -0.190 4.190 7 H 0.149 0.851 8 C -0.166 4.166 9 C -0.168 4.168 10 H 0.159 0.841 11 C 0.360 3.640 12 O -0.414 6.414 13 N -0.363 5.363 14 C -0.017 4.017 15 C -0.114 4.114 16 C -0.001 4.001 17 C -0.129 4.129 18 C -0.173 4.173 19 C 0.018 3.982 20 N -0.311 5.311 21 C -0.383 4.383 22 H 0.083 0.917 23 C -0.190 4.190 24 N -0.544 5.544 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.215 1.215 29 C 0.078 3.922 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.036 0.964 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.043 0.957 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.195 -0.631 -15.900 16.456 hybrid contribution -0.228 1.121 0.354 1.197 sum -4.423 0.490 -15.546 16.171 Atomic orbital electron populations 1.21588 0.79168 1.02498 1.02087 1.47435 1.06958 1.06258 1.74107 1.21782 0.97894 0.85287 1.01230 1.19403 0.88186 0.83233 0.74947 1.90671 1.69846 1.31155 1.49815 1.22288 0.92644 1.01490 1.02613 0.85106 1.23065 1.01950 0.93829 0.97801 1.22224 1.01250 1.04819 0.88461 0.84065 1.18848 0.83688 0.79761 0.81700 1.90705 1.30712 1.54083 1.65872 1.49348 1.33637 1.18584 1.34744 1.23135 0.92882 0.88304 0.97363 1.22751 0.97259 0.97056 0.94344 1.22923 0.96335 0.92895 0.87949 1.21209 1.00818 0.93942 0.96960 1.22020 1.00762 0.99012 0.95548 1.20898 0.95395 0.85913 0.96006 1.43995 1.81176 1.00097 1.05821 1.19158 1.19676 0.91146 1.08349 0.91748 1.25023 0.95411 0.99175 0.99406 1.70030 1.18398 1.23135 1.42813 0.86327 0.78672 0.83404 0.79040 1.20160 1.21677 1.21512 1.20360 0.92514 0.97880 0.81435 0.92581 0.91496 0.90773 0.92774 0.90996 0.90613 0.86856 0.87143 0.90431 0.90495 0.89815 0.91164 0.93054 0.91954 0.92986 0.92335 0.96405 0.92842 0.93773 0.95702 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 10.44 59.85 0.62 1.67 16 2 N -0.61 -8.13 3.27 -189.52 -0.62 -8.75 16 3 C 0.08 0.76 10.01 59.85 0.60 1.36 16 4 C 0.55 8.67 5.63 -10.99 -0.06 8.61 16 5 O -0.54 -10.32 15.69 5.55 0.09 -10.24 16 6 C -0.17 -2.10 4.79 -91.73 -0.44 -2.54 16 7 H 0.13 1.16 7.27 -51.93 -0.38 0.78 16 8 C -0.13 -1.47 9.74 -26.73 -0.26 -1.73 16 9 C -0.15 -2.07 5.96 -91.73 -0.55 -2.61 16 10 H 0.14 1.74 8.14 -51.92 -0.42 1.32 16 11 C 0.57 11.03 7.05 -10.98 -0.08 10.95 16 12 O -0.54 -12.42 16.56 5.56 0.09 -12.33 16 13 N -0.63 -11.58 3.48 -184.91 -0.64 -12.23 16 14 C 0.11 1.61 7.60 -8.03 -0.06 1.55 16 15 C -0.11 -1.97 0.96 -154.89 -0.15 -2.12 16 16 C 0.12 2.29 7.53 -8.18 -0.06 2.23 16 17 C -0.09 -1.38 5.11 -26.88 -0.14 -1.52 16 18 C -0.13 -2.20 6.03 -26.56 -0.16 -2.36 16 19 C 0.14 2.91 6.45 -3.75 -0.02 2.89 16 20 N -0.59 -14.34 2.99 -172.51 -0.52 -14.85 16 21 C -0.25 -6.95 9.56 -15.06 -0.14 -7.09 16 22 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 23 C 0.01 0.25 4.88 -17.43 -0.09 0.17 16 24 N -0.90 -25.96 11.43 55.49 0.63 -25.32 16 25 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 C 0.20 4.64 4.41 -3.86 -0.02 4.62 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.07 0.93 7.42 -51.93 -0.39 0.55 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.08 0.73 6.64 -51.93 -0.35 0.39 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.46 7.67 -51.93 -0.40 1.07 16 38 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 40 H 0.08 1.88 8.11 -51.93 -0.42 1.46 16 41 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 42 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.01 8.03 -51.93 -0.42 0.59 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.08 2.23 6.17 -51.93 -0.32 1.91 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -35.94 399.59 -9.50 -45.45 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.53 Total: 0.86 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -1.00 Total: 14.09 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.15 Total: -61.15 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.18 Total: -22.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.94 -9.50 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982012153.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.783 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds