Wall clock time and date at job start Tue Mar 31 2020 18:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00335 * 2 1 4 4 C 1.34775 * 119.99959 * 180.02562 * 2 1 3 5 5 O 1.21291 * 119.99961 * 0.02562 * 4 2 1 6 6 C 1.50691 * 120.00441 * 180.02562 * 4 2 1 7 7 H 1.09001 * 115.56436 * 325.47738 * 6 4 2 8 8 C 1.53007 * 117.50550 * 179.78154 * 6 4 2 9 9 C 1.52998 * 60.03259 * 252.52429 * 8 6 4 10 10 H 1.09007 * 117.49538 * 252.49375 * 9 8 6 11 11 C 1.50700 * 117.50166 * 107.49788 * 9 8 6 12 12 O 1.21280 * 120.00380 * 244.41507 * 11 9 8 13 13 N 1.34785 * 119.99597 * 64.41582 * 11 9 8 14 14 C 1.47188 * 135.99531 * 359.63233 * 13 11 9 15 15 C 1.53182 * 87.74307 * 153.43732 * 14 13 11 16 16 C 1.47162 * 135.99461 * 179.97438 * 13 11 9 17 17 C 1.52514 * 114.07995 * 139.64290 * 15 14 13 18 18 C 1.53194 * 109.36425 * 190.06740 * 17 15 14 19 19 C 1.53146 * 109.35536 * 301.11706 * 18 17 15 20 20 N 1.46898 * 109.09435 * 56.54305 * 19 18 17 21 21 C 1.36945 * 120.69859 * 124.59240 * 20 19 18 22 22 H 1.07998 * 119.99738 * 330.23331 * 21 20 19 23 23 C 1.38811 * 119.99731 * 150.23193 * 21 20 19 24 24 N 1.31620 * 120.00243 * 342.31631 * 23 21 20 25 25 Si 1.86797 * 119.99807 * 162.31999 * 23 21 20 26 26 H 1.48501 * 109.47011 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47257 * 119.99899 * 25 23 21 28 28 H 1.48502 * 109.47268 * 239.99973 * 25 23 21 29 29 C 1.47145 * 118.60306 * 304.56837 * 20 19 18 30 30 H 1.09000 * 109.47419 * 269.99764 * 1 2 3 31 31 H 1.09004 * 109.46988 * 30.00013 * 1 2 3 32 32 H 1.08996 * 109.47288 * 149.99385 * 1 2 3 33 33 H 1.08998 * 109.47562 * 270.00123 * 3 2 1 34 34 H 1.09001 * 109.46867 * 30.00120 * 3 2 1 35 35 H 1.08999 * 109.47218 * 149.99488 * 3 2 1 36 36 H 1.08998 * 117.49827 * 145.01518 * 8 6 4 37 37 H 1.09006 * 117.49139 * 0.02714 * 8 6 4 38 38 H 1.09003 * 113.49130 * 268.13137 * 14 13 11 39 39 H 1.08999 * 113.49314 * 38.64626 * 14 13 11 40 40 H 1.08997 * 113.48931 * 321.35956 * 16 13 11 41 41 H 1.08999 * 113.48139 * 91.86427 * 16 13 11 42 42 H 1.09002 * 109.49190 * 310.03627 * 17 15 14 43 43 H 1.08998 * 109.48228 * 70.10493 * 17 15 14 44 44 H 1.08992 * 109.49265 * 181.14522 * 18 17 15 45 45 H 1.09003 * 109.50854 * 61.08482 * 18 17 15 46 46 H 1.09003 * 109.53506 * 296.65583 * 19 18 17 47 47 H 1.09004 * 109.60041 * 176.46761 * 19 18 17 48 48 H 0.96994 * 120.00201 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.63482 * 291.53159 * 29 20 19 50 50 H 1.08996 * 109.63517 * 170.91685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0015 6 6 3.6458 -1.1673 0.0001 7 1 4.1164 -0.3568 -0.5565 8 6 4.3523 -2.5245 0.0046 9 6 4.3520 -1.6588 1.2661 10 1 5.2872 -1.1717 1.5425 11 6 3.4873 -2.1058 2.4166 12 8 2.5522 -1.4212 2.7741 13 7 3.7531 -3.2665 3.0482 14 6 4.7519 -4.3394 2.9154 15 6 4.5509 -4.6283 4.4062 16 6 3.1684 -4.0196 4.1691 17 6 4.5288 -6.1129 4.7549 18 6 4.0759 -6.2867 6.2080 19 6 5.0363 -5.5330 7.1326 20 7 5.0890 -4.1229 6.7243 21 6 4.8147 -3.1247 7.6209 22 1 4.1273 -3.3036 8.4344 23 6 5.4202 -1.8831 7.4840 24 7 6.4948 -1.7540 6.7350 25 14 4.7099 -0.3957 8.3628 26 1 3.5089 -0.8038 9.1349 27 1 5.7271 0.1649 9.2883 28 1 4.3288 0.6345 7.3634 29 6 5.4433 -3.8054 5.3319 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 2.3793 1.5834 -1.0276 34 1 1.6085 2.0283 0.5139 35 1 3.1499 1.1383 0.5139 36 1 5.2875 -2.6069 -0.5491 37 1 3.7270 -3.4173 0.0067 38 1 4.4301 -5.1549 2.2676 39 1 5.7504 -3.9759 2.6725 40 1 2.8267 -3.3856 4.9872 41 1 2.4200 -4.7489 3.8589 42 1 3.8350 -6.6316 4.0933 43 1 5.5285 -6.5298 4.6333 44 1 4.0788 -7.3457 6.4657 45 1 3.0688 -5.8865 6.3257 46 1 6.0318 -5.9711 7.0594 47 1 4.6828 -5.6016 8.1614 48 1 6.9181 -0.8865 6.6396 49 1 6.4884 -4.0582 5.1531 50 1 5.2832 -2.7434 5.1462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982012153.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:57 Heat of formation + Delta-G solvation = 1.943712 kcal Electronic energy + Delta-G solvation = -30842.076287 eV Core-core repulsion = 26871.539933 eV Total energy + Delta-G solvation = -3970.536354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05066 -41.16632 -39.48988 -37.44978 -37.10357 -36.50273 -34.72387 -32.17032 -31.35847 -29.45019 -28.13835 -27.47150 -27.19544 -26.97491 -24.71516 -24.06782 -23.96679 -22.21994 -20.72740 -19.70919 -19.42904 -18.66447 -18.50645 -17.59061 -17.32267 -17.06990 -16.75649 -16.55166 -16.13001 -15.87162 -15.79398 -15.28926 -14.86504 -14.76093 -14.56227 -14.23059 -14.12385 -14.04234 -13.65970 -13.53738 -13.49805 -13.46385 -13.15244 -13.08445 -12.99849 -12.87714 -12.74413 -12.61427 -12.28343 -12.02810 -11.82260 -11.68525 -11.67009 -11.45876 -11.31946 -11.01404 -10.97709 -10.67583 -10.56447 -9.71023 -9.67102 -8.65670 -7.92692 -5.35343 1.30617 1.34773 1.39930 1.46929 1.59543 1.83432 2.05348 2.44318 2.72130 3.19152 3.27861 3.36850 3.53875 3.67119 3.71278 3.84037 3.99973 4.11288 4.21153 4.24476 4.31884 4.32319 4.37051 4.40289 4.44398 4.56261 4.61276 4.63677 4.70919 4.74699 4.78834 4.81204 4.86868 4.87792 4.89479 5.02966 5.04472 5.07954 5.18408 5.29425 5.34311 5.47479 5.48349 5.56683 5.67253 5.71909 6.30028 6.37335 6.80276 7.08206 7.11514 7.13499 7.86078 8.36538 9.13318 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003982 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.115570 B = 7030.046849 C = 8343.213334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.074 3.926 4 C 0.536 3.464 5 O -0.588 6.588 6 C -0.166 4.166 7 H 0.173 0.827 8 C -0.103 4.103 9 C -0.162 4.162 10 H 0.161 0.839 11 C 0.554 3.446 12 O -0.593 6.593 13 N -0.639 5.639 14 C 0.121 3.879 15 C -0.106 4.106 16 C 0.118 3.882 17 C -0.085 4.085 18 C -0.125 4.125 19 C 0.138 3.862 20 N -0.608 5.608 21 C -0.259 4.259 22 H 0.058 0.942 23 C -0.039 4.039 24 N -0.924 5.924 25 Si 0.946 3.054 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.301 1.301 29 C 0.216 3.784 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.033 0.967 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.022 0.978 47 H 0.046 0.954 48 H 0.248 0.752 49 H 0.009 0.991 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -1.979 -18.430 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.351 5.351 3 C -0.067 4.067 4 C 0.326 3.674 5 O -0.469 6.469 6 C -0.186 4.186 7 H 0.190 0.810 8 C -0.141 4.141 9 C -0.183 4.183 10 H 0.178 0.822 11 C 0.345 3.655 12 O -0.474 6.474 13 N -0.372 5.372 14 C -0.001 4.001 15 C -0.108 4.108 16 C -0.005 4.005 17 C -0.123 4.123 18 C -0.164 4.164 19 C 0.013 3.987 20 N -0.331 5.331 21 C -0.390 4.390 22 H 0.076 0.924 23 C -0.235 4.235 24 N -0.570 5.570 25 Si 0.775 3.225 26 H -0.195 1.195 27 H -0.209 1.209 28 H -0.228 1.228 29 C 0.091 3.909 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.177 0.823 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.256 -1.793 -18.338 18.711 hybrid contribution -0.579 1.471 1.202 1.986 sum -3.835 -0.322 -17.136 17.563 Atomic orbital electron populations 1.21652 0.78997 1.03775 1.01156 1.47717 1.07621 1.07105 1.72692 1.22044 0.97473 0.83719 1.03512 1.20103 0.89775 0.83181 0.74353 1.90627 1.71098 1.32897 1.52274 1.22509 0.90719 1.03788 1.01629 0.80987 1.23228 1.03085 0.92448 0.95296 1.22179 1.01224 1.07365 0.87505 0.82193 1.19881 0.83686 0.79337 0.82578 1.90655 1.33333 1.55623 1.67784 1.49609 1.34192 1.19166 1.34249 1.23272 0.93010 0.88119 0.95665 1.22462 0.95008 0.98064 0.95266 1.22925 0.97598 0.92769 0.87241 1.21238 1.02758 0.91742 0.96538 1.21910 0.98645 1.00271 0.95572 1.21094 0.96690 0.84076 0.96871 1.44257 1.81302 1.01340 1.06249 1.19396 1.18815 0.92332 1.08428 0.92404 1.25593 0.96030 1.01162 1.00759 1.70130 1.19455 1.23118 1.44315 0.85524 0.78362 0.80619 0.77961 1.19532 1.20886 1.22845 1.20032 0.92674 0.96244 0.81977 0.94626 0.87526 0.92147 0.89343 0.90147 0.90912 0.82278 0.89016 0.86410 0.89152 0.94876 0.88855 0.89458 0.90303 0.89350 0.93602 0.96007 0.93584 0.94244 0.97327 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.06 10.44 127.77 1.33 3.39 16 2 N -0.62 -16.08 3.27 -871.90 -2.85 -18.93 16 3 C 0.07 1.25 10.01 127.77 1.28 2.53 16 4 C 0.54 16.65 5.63 87.65 0.49 17.14 16 5 O -0.59 -23.13 15.69 -3.06 -0.05 -23.18 16 6 C -0.17 -3.75 4.79 -11.51 -0.06 -3.80 16 7 H 0.17 2.35 7.27 -2.39 -0.02 2.33 16 8 C -0.10 -2.04 9.74 30.60 0.30 -1.74 16 9 C -0.16 -4.34 5.96 -11.51 -0.07 -4.40 16 10 H 0.16 3.63 8.14 -2.38 -0.02 3.61 16 11 C 0.55 21.83 7.05 87.66 0.62 22.45 16 12 O -0.59 -28.93 16.56 -3.03 -0.05 -28.98 16 13 N -0.64 -23.57 3.48 -857.30 -2.99 -26.56 16 14 C 0.12 3.36 7.60 83.42 0.63 3.99 16 15 C -0.11 -3.61 0.96 -52.42 -0.05 -3.66 16 16 C 0.12 4.50 7.53 83.34 0.63 5.13 16 17 C -0.08 -2.27 5.11 30.50 0.16 -2.12 16 18 C -0.13 -3.79 6.03 30.71 0.19 -3.60 16 19 C 0.14 5.50 6.45 86.35 0.56 6.05 16 20 N -0.61 -30.32 2.99 -699.70 -2.09 -32.41 16 21 C -0.26 -14.69 9.56 84.03 0.80 -13.89 16 22 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 23 C -0.04 -2.26 4.88 84.86 0.41 -1.85 16 24 N -0.92 -55.27 11.43 21.65 0.25 -55.02 16 25 Si 0.95 47.59 29.59 68.60 2.03 49.62 16 26 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.30 -15.62 7.11 99.48 0.71 -14.92 16 29 C 0.22 10.04 4.41 86.14 0.38 10.42 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16 32 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.21 8.07 -2.39 -0.02 1.19 16 35 H 0.07 1.28 6.64 -2.39 -0.02 1.27 16 36 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 2.23 7.67 -2.38 -0.02 2.21 16 38 H 0.12 2.41 8.10 -2.39 -0.02 2.39 16 39 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 40 H 0.03 1.58 8.11 -2.39 -0.02 1.56 16 41 H 0.09 3.10 8.06 -2.39 -0.02 3.08 16 42 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 46 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.05 1.86 7.93 -2.38 -0.02 1.84 16 48 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 49 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.04 2.16 6.17 -2.39 -0.01 2.15 16 Total: -1.00 -86.65 399.59 2.76 -83.89 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.91 Total: 15.54 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 7.61 Total: 36.04 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -7.69 Total: -132.92 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.10 Total: -52.16 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -86.65 2.76 -83.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982012153.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.829 kcal (2) G-P(sol) polarization free energy of solvation -86.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds