Wall clock time and date at job start Tue Mar 31 2020 18:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 120.00059 * 2 1 4 4 C 1.34772 * 120.00126 * 179.97438 * 2 1 3 5 5 O 1.21280 * 120.00036 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00250 * 179.97438 * 4 2 1 7 7 H 1.09004 * 115.55245 * 306.71525 * 6 4 2 8 8 C 1.52998 * 117.49935 * 161.00315 * 6 4 2 9 9 C 1.52995 * 60.00113 * 252.51391 * 8 6 4 10 10 H 1.09006 * 117.49772 * 252.51020 * 9 8 6 11 11 C 1.50702 * 117.51721 * 107.48401 * 9 8 6 12 12 O 1.21280 * 119.99929 * 356.55582 * 11 9 8 13 13 N 1.34783 * 119.99934 * 176.56257 * 11 9 8 14 14 C 1.46493 * 119.99736 * 180.02562 * 13 11 9 15 15 C 1.51231 * 111.08076 * 78.36010 * 14 13 11 16 16 C 1.56587 * 104.17557 * 84.75407 * 15 14 13 17 17 C 1.56282 * 106.06968 * 6.58135 * 16 15 14 18 18 C 1.50520 * 101.75833 * 24.67614 * 17 16 15 19 19 H 1.09004 * 107.73885 * 66.77214 * 18 17 16 20 20 N 1.42698 * 128.17126 * 198.66899 * 18 17 16 21 21 C 1.36941 * 127.10291 * 331.76962 * 20 18 17 22 22 H 1.07994 * 120.00061 * 359.97438 * 21 20 18 23 23 C 1.38804 * 119.99897 * 179.97438 * 21 20 18 24 24 N 1.31627 * 120.00310 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00314 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46986 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47591 * 119.99784 * 25 23 21 28 28 H 1.48501 * 109.47175 * 240.00272 * 25 23 21 29 29 C 1.49289 * 105.79375 * 151.73795 * 20 18 17 30 30 C 1.52136 * 111.09052 * 298.98027 * 14 13 11 31 31 H 1.09001 * 109.47096 * 270.00338 * 1 2 3 32 32 H 1.09001 * 109.47150 * 30.00437 * 1 2 3 33 33 H 1.09002 * 109.46739 * 149.99971 * 1 2 3 34 34 H 1.08995 * 109.47082 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.46617 * 299.99796 * 3 2 1 36 36 H 1.09003 * 109.46837 * 59.99706 * 3 2 1 37 37 H 1.09004 * 117.49818 * 145.02053 * 8 6 4 38 38 H 1.09002 * 117.50221 * 0.02562 * 8 6 4 39 39 H 0.96995 * 120.00138 * 359.97438 * 13 11 9 40 40 H 1.08991 * 110.41408 * 202.67597 * 15 14 13 41 41 H 1.08998 * 110.40271 * 325.11260 * 15 14 13 42 42 H 1.08998 * 109.73825 * 247.61016 * 16 15 14 43 43 H 1.08995 * 110.50496 * 125.96476 * 16 15 14 44 44 H 1.09003 * 110.96893 * 266.56418 * 17 16 15 45 45 H 1.09002 * 110.97314 * 142.79337 * 17 16 15 46 46 H 0.96993 * 120.00113 * 179.97438 * 24 23 21 47 47 H 1.09004 * 110.05210 * 232.07604 * 29 20 18 48 48 H 1.08996 * 110.09592 * 110.62610 * 29 20 18 49 49 H 1.09000 * 111.15362 * 43.91581 * 30 14 13 50 50 H 1.09006 * 111.15153 * 168.14175 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 1 4.1158 -0.5798 -0.7890 8 6 4.3525 -2.4501 0.4423 9 6 4.3528 -1.2227 1.3557 10 1 5.2880 -0.6722 1.4586 11 6 3.4888 -1.2727 2.5894 12 8 2.7797 -2.2350 2.7945 13 7 3.5041 -0.2480 3.4649 14 6 2.6647 -0.2969 4.6644 15 6 3.2832 -1.1793 5.7256 16 6 4.2833 -0.2352 6.4742 17 6 4.0464 1.1954 5.8914 18 6 2.6272 1.0952 5.3999 19 1 1.9816 0.9789 6.2704 20 7 1.9585 1.9342 4.4590 21 6 2.2159 3.2541 4.2001 22 1 2.9996 3.7669 4.7378 23 6 1.4694 3.9327 3.2467 24 7 0.5139 3.3077 2.5918 25 14 1.8209 5.7329 2.8930 26 1 2.9360 6.1984 3.7562 27 1 2.2005 5.8921 1.4662 28 1 0.6061 6.5391 3.1750 29 6 0.9209 1.0757 3.8147 30 6 1.1908 -0.3853 4.2980 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 3.2691 1.0696 -0.0005 35 1 1.9342 1.8403 -0.8900 36 1 1.9341 1.8404 0.8900 37 1 5.2874 -2.7071 -0.0558 38 1 3.7274 -3.2943 0.7333 39 1 4.0715 0.5214 3.3010 40 1 2.5195 -1.5339 6.4176 41 1 3.8008 -2.0210 5.2655 42 1 5.3070 -0.5551 6.2799 43 1 4.0851 -0.2419 7.5459 44 1 4.7309 1.3995 5.0681 45 1 4.1371 1.9535 6.6694 46 1 -0.0079 3.7820 1.9258 47 1 1.0096 1.1329 2.7298 48 1 -0.0742 1.3942 4.1251 49 1 1.0278 -1.1021 3.4932 50 1 0.5829 -0.6300 5.1690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992166424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:53 Heat of formation + Delta-G solvation = 6.718038 kcal Electronic energy + Delta-G solvation = -32684.836179 eV Core-core repulsion = 28714.506855 eV Total energy + Delta-G solvation = -3970.329324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.67474 -39.71408 -38.05787 -35.63548 -35.02149 -34.44381 -32.92075 -31.71447 -29.90238 -27.99816 -26.97718 -26.26270 -25.85395 -24.35868 -23.90160 -22.87093 -20.60756 -20.25368 -19.61678 -18.88713 -18.53912 -17.44711 -16.53082 -16.09751 -15.89403 -15.55645 -15.36296 -14.72282 -14.62763 -14.36814 -14.24047 -13.93880 -13.81248 -13.26892 -12.81251 -12.58945 -12.45858 -12.34365 -12.10975 -11.98961 -11.91739 -11.77004 -11.56628 -11.40819 -11.36959 -11.05796 -10.99702 -10.85528 -10.55849 -10.51842 -10.45955 -10.30021 -10.03154 -9.96914 -9.73389 -9.60159 -9.43611 -9.02458 -8.72908 -8.40031 -8.20380 -6.90156 -5.80881 -3.15243 2.64789 3.11396 3.29522 3.32769 3.37681 3.39180 3.56692 4.07162 4.38529 4.61537 4.68665 4.83090 4.85180 5.08128 5.19444 5.19776 5.31328 5.40898 5.55091 5.57246 5.62082 5.68760 5.76866 5.82000 5.82361 5.85513 5.93615 5.98158 6.03850 6.12677 6.23260 6.25007 6.29397 6.31656 6.35281 6.41443 6.48712 6.53361 6.70170 6.83514 6.85544 6.90576 7.24573 7.48951 7.58087 7.74163 7.76589 8.10217 8.13194 8.55386 8.78213 9.07111 9.73059 10.43443 11.29928 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.006736 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.198254 B = 4155.878557 C = 5926.500279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.603 5.603 3 C 0.069 3.931 4 C 0.539 3.461 5 O -0.533 6.533 6 C -0.161 4.161 7 H 0.130 0.870 8 C -0.117 4.117 9 C -0.169 4.169 10 H 0.126 0.874 11 C 0.536 3.464 12 O -0.530 6.530 13 N -0.685 5.685 14 C 0.135 3.865 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.158 3.842 19 H 0.020 0.980 20 N -0.582 5.582 21 C -0.225 4.225 22 H 0.077 0.923 23 C -0.002 4.002 24 N -0.913 5.913 25 Si 0.904 3.096 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.181 3.819 30 C -0.144 4.144 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.399 0.601 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.251 0.749 47 H 0.071 0.929 48 H 0.030 0.970 49 H 0.076 0.924 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.514 -5.449 -2.209 10.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.336 5.336 3 C -0.074 4.074 4 C 0.325 3.675 5 O -0.409 6.409 6 C -0.182 4.182 7 H 0.148 0.852 8 C -0.155 4.155 9 C -0.191 4.191 10 H 0.144 0.856 11 C 0.321 3.679 12 O -0.407 6.407 13 N -0.335 5.335 14 C 0.047 3.953 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.153 4.153 18 C 0.048 3.952 19 H 0.038 0.962 20 N -0.305 5.305 21 C -0.353 4.353 22 H 0.095 0.905 23 C -0.199 4.199 24 N -0.560 5.560 25 Si 0.735 3.265 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.219 1.219 29 C 0.057 3.943 30 C -0.183 4.183 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.094 0.906 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.540 -6.451 -2.183 10.160 hybrid contribution 0.451 1.810 -0.286 1.887 sum 7.991 -4.641 -2.469 9.565 Atomic orbital electron populations 1.21536 0.78934 1.01821 1.02537 1.47485 1.07139 1.06145 1.72788 1.22042 0.96111 0.85183 1.04016 1.19453 0.88002 0.83522 0.76495 1.90672 1.69585 1.31144 1.49529 1.22191 0.93170 1.04857 0.98022 0.85205 1.22981 1.01647 0.91927 0.98918 1.22367 1.01057 1.05664 0.89997 0.85622 1.19376 0.82307 0.83055 0.83190 1.90702 1.41105 1.33323 1.75576 1.45545 1.44885 1.20455 1.22592 1.21495 0.90291 0.99009 0.84492 1.22048 0.98656 0.97436 0.96993 1.22960 0.98798 0.94446 0.99236 1.21837 0.97407 0.95948 1.00060 1.20808 0.93024 0.88857 0.92553 0.96249 1.43651 1.36929 1.06950 1.42973 1.19040 1.14843 0.84299 1.17129 0.90472 1.24718 0.98262 0.97766 0.99142 1.69936 1.23350 1.34684 1.28060 0.86176 0.77395 0.85307 0.77623 1.20723 1.21859 1.21934 1.22018 0.90962 0.83244 0.98074 1.22831 0.93583 1.00421 1.01469 0.92078 0.91464 0.91519 0.91432 0.93040 0.88154 0.87459 0.86377 0.76591 0.91330 0.91563 0.92312 0.91957 0.91745 0.91804 0.93897 0.91125 0.95172 0.90557 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.48 59.85 0.63 2.21 16 2 N -0.60 -10.25 3.27 -189.51 -0.62 -10.87 16 3 C 0.07 1.09 10.61 59.85 0.63 1.72 16 4 C 0.54 9.59 6.18 -10.99 -0.07 9.52 16 5 O -0.53 -11.35 16.01 5.56 0.09 -11.26 16 6 C -0.16 -2.22 4.38 -91.77 -0.40 -2.62 16 7 H 0.13 1.39 7.62 -51.93 -0.40 1.00 16 8 C -0.12 -1.52 9.55 -26.73 -0.26 -1.77 16 9 C -0.17 -2.29 6.19 -91.77 -0.57 -2.86 16 10 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 11 C 0.54 9.27 6.14 -10.98 -0.07 9.20 16 12 O -0.53 -11.06 14.07 5.56 0.08 -10.98 16 13 N -0.68 -11.54 4.48 -46.58 -0.21 -11.74 16 14 C 0.14 2.41 0.42 -130.71 -0.06 2.36 16 15 C -0.11 -1.75 6.24 -25.69 -0.16 -1.91 16 16 C -0.12 -1.57 6.95 -23.04 -0.16 -1.73 16 17 C -0.11 -1.78 6.46 -26.21 -0.17 -1.95 16 18 C 0.16 3.01 2.65 -68.72 -0.18 2.83 16 19 H 0.02 0.41 7.98 -51.93 -0.41 0.00 16 20 N -0.58 -13.13 3.16 -162.69 -0.51 -13.65 16 21 C -0.23 -5.51 10.29 -15.06 -0.15 -5.66 16 22 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16 23 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 24 N -0.91 -23.29 10.16 55.49 0.56 -22.73 16 25 Si 0.90 20.11 29.55 -169.99 -5.02 15.09 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 C 0.18 4.12 5.33 -0.76 0.00 4.12 16 30 C -0.14 -2.93 6.10 -25.44 -0.16 -3.09 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 33 H 0.07 1.10 7.42 -51.93 -0.39 0.71 16 34 H 0.07 0.91 5.88 -51.93 -0.31 0.60 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 1.89 7.33 -51.93 -0.38 1.51 16 39 H 0.40 6.48 7.55 -40.82 -0.31 6.17 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.99 7.17 -51.93 -0.37 0.62 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.25 6.33 8.31 -40.82 -0.34 5.99 16 47 H 0.07 1.73 6.21 -51.93 -0.32 1.40 16 48 H 0.03 0.77 7.98 -51.93 -0.41 0.36 16 49 H 0.08 1.71 6.27 -51.93 -0.33 1.38 16 50 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -30.10 389.05 -9.16 -39.26 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.15 Total: 10.83 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -1.24 Total: 10.19 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.78 Total: -58.99 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.17 Total: -22.24 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.10 -9.16 -39.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992166424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.976 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds