Wall clock time and date at job start Tue Mar 31 2020 18:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 120.00059 * 2 1 4 4 C 1.34772 * 120.00126 * 179.97438 * 2 1 3 5 5 O 1.21280 * 120.00036 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00250 * 179.97438 * 4 2 1 7 7 H 1.09004 * 115.55245 * 306.71525 * 6 4 2 8 8 C 1.52998 * 117.49935 * 161.00315 * 6 4 2 9 9 C 1.52995 * 60.00113 * 252.51391 * 8 6 4 10 10 H 1.09006 * 117.49772 * 252.51020 * 9 8 6 11 11 C 1.50702 * 117.51721 * 107.48401 * 9 8 6 12 12 O 1.21280 * 119.99929 * 356.55582 * 11 9 8 13 13 N 1.34783 * 119.99934 * 176.56257 * 11 9 8 14 14 C 1.46493 * 119.99736 * 180.02562 * 13 11 9 15 15 C 1.51231 * 111.08076 * 78.36010 * 14 13 11 16 16 C 1.56587 * 104.17557 * 84.75407 * 15 14 13 17 17 C 1.56282 * 106.06968 * 6.58135 * 16 15 14 18 18 C 1.50520 * 101.75833 * 24.67614 * 17 16 15 19 19 H 1.09004 * 107.73885 * 66.77214 * 18 17 16 20 20 N 1.42698 * 128.17126 * 198.66899 * 18 17 16 21 21 C 1.36941 * 127.10291 * 331.76962 * 20 18 17 22 22 H 1.07994 * 120.00061 * 359.97438 * 21 20 18 23 23 C 1.38804 * 119.99897 * 179.97438 * 21 20 18 24 24 N 1.31627 * 120.00310 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00314 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46986 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47591 * 119.99784 * 25 23 21 28 28 H 1.48501 * 109.47175 * 240.00272 * 25 23 21 29 29 C 1.49289 * 105.79375 * 151.73795 * 20 18 17 30 30 C 1.52136 * 111.09052 * 298.98027 * 14 13 11 31 31 H 1.09001 * 109.47096 * 270.00338 * 1 2 3 32 32 H 1.09001 * 109.47150 * 30.00437 * 1 2 3 33 33 H 1.09002 * 109.46739 * 149.99971 * 1 2 3 34 34 H 1.08995 * 109.47082 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.46617 * 299.99796 * 3 2 1 36 36 H 1.09003 * 109.46837 * 59.99706 * 3 2 1 37 37 H 1.09004 * 117.49818 * 145.02053 * 8 6 4 38 38 H 1.09002 * 117.50221 * 0.02562 * 8 6 4 39 39 H 0.96995 * 120.00138 * 359.97438 * 13 11 9 40 40 H 1.08991 * 110.41408 * 202.67597 * 15 14 13 41 41 H 1.08998 * 110.40271 * 325.11260 * 15 14 13 42 42 H 1.08998 * 109.73825 * 247.61016 * 16 15 14 43 43 H 1.08995 * 110.50496 * 125.96476 * 16 15 14 44 44 H 1.09003 * 110.96893 * 266.56418 * 17 16 15 45 45 H 1.09002 * 110.97314 * 142.79337 * 17 16 15 46 46 H 0.96993 * 120.00113 * 179.97438 * 24 23 21 47 47 H 1.09004 * 110.05210 * 232.07604 * 29 20 18 48 48 H 1.08996 * 110.09592 * 110.62610 * 29 20 18 49 49 H 1.09000 * 111.15362 * 43.91581 * 30 14 13 50 50 H 1.09006 * 111.15153 * 168.14175 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 1 4.1158 -0.5798 -0.7890 8 6 4.3525 -2.4501 0.4423 9 6 4.3528 -1.2227 1.3557 10 1 5.2880 -0.6722 1.4586 11 6 3.4888 -1.2727 2.5894 12 8 2.7797 -2.2350 2.7945 13 7 3.5041 -0.2480 3.4649 14 6 2.6647 -0.2969 4.6644 15 6 3.2832 -1.1793 5.7256 16 6 4.2833 -0.2352 6.4742 17 6 4.0464 1.1954 5.8914 18 6 2.6272 1.0952 5.3999 19 1 1.9816 0.9789 6.2704 20 7 1.9585 1.9342 4.4590 21 6 2.2159 3.2541 4.2001 22 1 2.9996 3.7669 4.7378 23 6 1.4694 3.9327 3.2467 24 7 0.5139 3.3077 2.5918 25 14 1.8209 5.7329 2.8930 26 1 2.9360 6.1984 3.7562 27 1 2.2005 5.8921 1.4662 28 1 0.6061 6.5391 3.1750 29 6 0.9209 1.0757 3.8147 30 6 1.1908 -0.3853 4.2980 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 3.2691 1.0696 -0.0005 35 1 1.9342 1.8403 -0.8900 36 1 1.9341 1.8404 0.8900 37 1 5.2874 -2.7071 -0.0558 38 1 3.7274 -3.2943 0.7333 39 1 4.0715 0.5214 3.3010 40 1 2.5195 -1.5339 6.4176 41 1 3.8008 -2.0210 5.2655 42 1 5.3070 -0.5551 6.2799 43 1 4.0851 -0.2419 7.5459 44 1 4.7309 1.3995 5.0681 45 1 4.1371 1.9535 6.6694 46 1 -0.0079 3.7820 1.9258 47 1 1.0096 1.1329 2.7298 48 1 -0.0742 1.3942 4.1251 49 1 1.0278 -1.1021 3.4932 50 1 0.5829 -0.6300 5.1690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992166424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:52 Heat of formation + Delta-G solvation = -12.172687 kcal Electronic energy + Delta-G solvation = -32685.655342 eV Core-core repulsion = 28714.506855 eV Total energy + Delta-G solvation = -3971.148487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.08093 -41.09940 -39.48983 -36.86206 -36.46174 -36.07774 -34.32540 -33.48345 -31.55172 -29.34721 -28.51317 -27.64931 -27.25629 -25.94384 -25.36682 -24.04236 -22.21169 -21.50445 -21.13630 -20.28303 -19.92088 -18.73804 -18.27493 -17.46127 -17.36878 -16.98403 -16.70711 -16.30240 -16.00436 -15.93118 -15.63099 -15.47823 -15.16565 -14.70259 -14.19560 -14.04535 -13.99281 -13.92578 -13.53820 -13.40285 -13.34300 -13.02860 -12.98495 -12.92664 -12.79119 -12.72252 -12.62526 -12.14612 -12.09241 -11.98318 -11.74156 -11.63241 -11.52498 -11.48598 -11.33242 -11.08817 -10.87293 -10.64222 -10.49800 -9.83447 -9.62663 -8.76554 -7.71512 -5.07906 1.36118 1.51595 1.56337 1.62446 1.76704 2.04299 2.28239 2.56683 2.93429 3.13005 3.45135 3.49883 3.72867 3.76498 3.79908 3.89686 3.96101 4.11508 4.23888 4.33361 4.36985 4.40095 4.41557 4.42405 4.49323 4.57436 4.63013 4.72714 4.74276 4.81773 4.84919 4.87940 4.95721 5.00133 5.07136 5.13030 5.14600 5.19395 5.24251 5.31713 5.49191 5.52724 5.58949 5.68033 5.77900 5.88189 6.25758 6.42146 6.75588 7.14216 7.18473 7.44529 7.85459 8.58867 9.38039 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.006736 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.198254 B = 4155.878557 C = 5926.500279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.605 5.605 3 C 0.076 3.924 4 C 0.527 3.473 5 O -0.579 6.579 6 C -0.164 4.164 7 H 0.174 0.826 8 C -0.107 4.107 9 C -0.166 4.166 10 H 0.172 0.828 11 C 0.528 3.472 12 O -0.573 6.573 13 N -0.679 5.679 14 C 0.142 3.858 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.107 4.107 18 C 0.149 3.851 19 H 0.005 0.995 20 N -0.590 5.590 21 C -0.231 4.231 22 H 0.084 0.916 23 C -0.046 4.046 24 N -0.931 5.931 25 Si 0.962 3.038 26 H -0.272 1.272 27 H -0.289 1.289 28 H -0.308 1.308 29 C 0.198 3.802 30 C -0.137 4.137 31 H 0.029 0.971 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.155 0.845 38 H 0.080 0.920 39 H 0.405 0.595 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.244 0.756 47 H 0.052 0.948 48 H -0.012 1.012 49 H 0.051 0.949 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 -4.758 -2.389 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.336 5.336 3 C -0.067 4.067 4 C 0.316 3.684 5 O -0.459 6.459 6 C -0.185 4.185 7 H 0.191 0.809 8 C -0.144 4.144 9 C -0.187 4.187 10 H 0.189 0.811 11 C 0.315 3.685 12 O -0.453 6.453 13 N -0.329 5.329 14 C 0.054 3.946 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.145 4.145 18 C 0.040 3.960 19 H 0.023 0.977 20 N -0.313 5.313 21 C -0.359 4.359 22 H 0.102 0.898 23 C -0.240 4.240 24 N -0.580 5.580 25 Si 0.792 3.208 26 H -0.196 1.196 27 H -0.216 1.216 28 H -0.236 1.236 29 C 0.073 3.927 30 C -0.176 4.176 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.173 0.827 38 H 0.098 0.902 39 H 0.241 0.759 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.006 0.994 49 H 0.070 0.930 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.537 -5.734 -2.343 13.095 hybrid contribution -0.924 1.584 -0.183 1.842 sum 10.613 -4.150 -2.526 11.673 Atomic orbital electron populations 1.21432 0.79739 1.02587 1.00723 1.47637 1.07048 1.06828 1.72124 1.22009 0.97569 0.84146 1.02937 1.20292 0.90049 0.82782 0.75300 1.90646 1.71031 1.32668 1.51563 1.22346 0.90159 1.06620 0.99363 0.80899 1.23074 1.02664 0.90282 0.98419 1.22500 1.01628 1.06920 0.87622 0.81087 1.20092 0.82110 0.82200 0.84108 1.90694 1.42974 1.34959 1.76631 1.45505 1.44411 1.20646 1.22335 1.21402 0.88788 0.98865 0.85535 1.22044 0.99157 0.97382 0.96283 1.22884 0.99276 0.91990 0.99708 1.21840 0.94539 0.97687 1.00476 1.20979 0.94932 0.88716 0.91396 0.97743 1.43694 1.37199 1.06923 1.43461 1.19301 1.14663 0.85128 1.16825 0.89827 1.25331 0.98442 1.00756 0.99471 1.70118 1.24018 1.35515 1.28309 0.85270 0.76606 0.81390 0.77485 1.19630 1.21599 1.23643 1.21644 0.89304 0.84753 0.96971 1.22653 0.96393 0.97953 1.00560 0.95212 0.89660 0.91675 0.88560 0.91175 0.92050 0.82694 0.90151 0.75879 0.91241 0.91868 0.89870 0.90181 0.90962 0.91102 0.94655 0.92960 0.99400 0.92987 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.50 10.48 127.77 1.34 4.83 16 2 N -0.60 -20.80 3.27 -871.88 -2.85 -23.66 16 3 C 0.08 2.29 10.61 127.77 1.36 3.65 16 4 C 0.53 18.73 6.18 87.66 0.54 19.27 16 5 O -0.58 -25.59 16.01 -3.03 -0.05 -25.64 16 6 C -0.16 -4.05 4.38 -11.54 -0.05 -4.10 16 7 H 0.17 2.80 7.62 -2.39 -0.02 2.78 16 8 C -0.11 -2.46 9.55 30.59 0.29 -2.16 16 9 C -0.17 -3.95 6.19 -11.54 -0.07 -4.02 16 10 H 0.17 2.56 8.14 -2.38 -0.02 2.54 16 11 C 0.53 17.77 6.14 87.66 0.54 18.31 16 12 O -0.57 -24.38 14.07 -3.03 -0.04 -24.42 16 13 N -0.68 -22.09 4.48 -419.65 -1.88 -23.97 16 14 C 0.14 5.05 0.42 4.33 0.00 5.05 16 15 C -0.11 -3.25 6.24 31.27 0.20 -3.05 16 16 C -0.10 -2.36 6.95 32.99 0.23 -2.13 16 17 C -0.11 -3.05 6.46 30.93 0.20 -2.85 16 18 C 0.15 5.60 2.65 46.47 0.12 5.72 16 19 H 0.01 0.21 7.98 -2.39 -0.02 0.19 16 20 N -0.59 -26.97 3.16 -668.62 -2.11 -29.08 16 21 C -0.23 -11.24 10.29 84.03 0.86 -10.38 16 22 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.05 -2.28 5.49 84.86 0.47 -1.81 16 24 N -0.93 -49.09 10.16 21.65 0.22 -48.87 16 25 Si 0.96 41.24 29.55 68.60 2.03 43.27 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.31 -13.96 7.11 99.48 0.71 -13.26 16 29 C 0.20 9.52 5.33 86.96 0.46 9.99 16 30 C -0.14 -5.84 6.10 31.43 0.19 -5.65 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 33 H 0.06 2.29 7.42 -2.39 -0.02 2.28 16 34 H 0.10 2.31 5.88 -2.39 -0.01 2.29 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.42 6.91 -2.39 -0.02 2.40 16 37 H 0.16 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.08 2.54 7.33 -2.39 -0.02 2.52 16 39 H 0.40 12.23 7.55 -92.71 -0.70 11.53 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 1.94 7.73 -2.39 -0.02 1.92 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.96 7.17 -2.39 -0.02 1.95 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.24 12.74 8.31 -92.71 -0.77 11.97 16 47 H 0.05 2.71 6.21 -2.38 -0.01 2.70 16 48 H -0.01 -0.68 7.98 -2.39 -0.02 -0.70 16 49 H 0.05 2.48 6.27 -2.39 -0.01 2.47 16 50 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -70.90 389.05 2.23 -68.66 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.25 Total: 33.06 kcal Atomic # 6 Polarization: 23.97 SS G_CDS: 6.68 Total: 30.65 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.63 Total: -125.58 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.09 Total: -50.06 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -70.90 2.23 -68.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992166424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.489 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds