Wall clock time and date at job start Tue Mar 31 2020 18:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99716 * 2 1 4 4 C 1.34774 * 120.00539 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99843 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00112 * 180.02562 * 4 2 1 7 7 H 1.08996 * 115.56495 * 357.83786 * 6 4 2 8 8 C 1.53005 * 117.49710 * 212.15090 * 6 4 2 9 9 C 1.53002 * 117.49936 * 143.52941 * 6 4 2 10 10 H 1.08995 * 117.51855 * 214.96927 * 9 6 4 11 11 C 1.50698 * 117.49860 * 0.02562 * 9 6 4 12 12 O 1.21282 * 120.00650 * 90.13319 * 11 9 6 13 13 N 1.34776 * 119.99788 * 270.13559 * 11 9 6 14 14 C 1.46508 * 119.99943 * 179.97438 * 13 11 9 15 15 C 1.51228 * 111.47049 * 281.21818 * 14 13 11 16 16 C 1.55690 * 104.61062 * 275.93433 * 15 14 13 17 17 C 1.56288 * 105.93637 * 352.75724 * 16 15 14 18 18 C 1.50518 * 101.75795 * 335.73902 * 17 16 15 19 19 H 1.09002 * 108.13033 * 293.76304 * 18 17 16 20 20 N 1.42695 * 128.17253 * 161.33043 * 18 17 16 21 21 C 1.36935 * 127.10365 * 28.27017 * 20 18 17 22 22 H 1.07993 * 120.00188 * 359.96579 * 21 20 18 23 23 C 1.38813 * 119.99886 * 179.97438 * 21 20 18 24 24 N 1.31625 * 120.00122 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00047 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46928 * 60.00156 * 25 23 21 27 27 H 1.48500 * 109.47240 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47097 * 300.00258 * 25 23 21 29 29 C 1.49301 * 105.79246 * 208.26518 * 20 18 17 30 30 C 1.52132 * 111.09002 * 61.01539 * 14 13 11 31 31 H 1.09002 * 109.47029 * 269.99278 * 1 2 3 32 32 H 1.08995 * 109.47708 * 30.00235 * 1 2 3 33 33 H 1.09003 * 109.46392 * 150.00293 * 1 2 3 34 34 H 1.08996 * 109.47301 * 240.00203 * 3 2 1 35 35 H 1.09006 * 109.47157 * 359.97438 * 3 2 1 36 36 H 1.09001 * 109.47088 * 120.00131 * 3 2 1 37 37 H 1.08998 * 117.49574 * 145.02472 * 8 6 4 38 38 H 1.09003 * 117.51771 * 359.97438 * 8 6 4 39 39 H 0.96999 * 120.00133 * 359.97438 * 13 11 9 40 40 H 1.09000 * 110.40495 * 157.15568 * 15 14 13 41 41 H 1.09000 * 110.50967 * 34.76574 * 15 14 13 42 42 H 1.09001 * 110.16050 * 233.63710 * 16 15 14 43 43 H 1.09005 * 110.15787 * 111.86732 * 16 15 14 44 44 H 1.09004 * 110.96755 * 217.62581 * 17 16 15 45 45 H 1.09000 * 110.97274 * 93.86138 * 17 16 15 46 46 H 0.96999 * 119.99973 * 179.97438 * 24 23 21 47 47 H 1.08998 * 110.04684 * 249.40144 * 29 20 18 48 48 H 1.08999 * 110.08896 * 127.94649 * 29 20 18 49 49 H 1.09001 * 111.15327 * 316.08136 * 30 14 13 50 50 H 1.09000 * 111.14535 * 191.85996 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6460 -1.1670 0.0001 7 1 4.1163 -0.1844 -0.0362 8 6 4.3528 -2.3155 -0.7227 9 6 4.3522 -2.2589 0.8063 10 1 5.2872 -1.9949 1.3005 11 6 3.4876 -3.2524 1.5386 12 8 3.1424 -4.2770 0.9890 13 7 3.0978 -3.0025 2.8043 14 6 2.2568 -3.9681 3.5160 15 6 0.8094 -3.8604 3.0913 16 6 0.2286 -2.7094 3.9641 17 6 1.3496 -2.3402 4.9886 18 6 2.1442 -3.6172 5.0473 19 1 1.5158 -4.3875 5.4945 20 7 3.4790 -3.8046 5.5157 21 6 4.1333 -3.0644 6.4639 22 1 3.6326 -2.2358 6.9424 23 6 5.4403 -3.3791 6.8100 24 7 6.0504 -4.3893 6.2271 25 14 6.3331 -2.3690 8.1031 26 1 5.5933 -2.4452 9.3884 27 1 7.7057 -2.9045 8.2888 28 1 6.4102 -0.9539 7.6594 29 6 4.0149 -4.9745 4.7585 30 6 2.9609 -5.3095 3.6550 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3632 -0.8901 -0.5138 34 1 2.8241 1.3266 -0.8900 35 1 1.4891 2.0973 -0.0005 36 1 2.8241 1.3265 0.8900 37 1 5.2880 -2.0884 -1.2343 38 1 3.7280 -3.0716 -1.1983 39 1 3.3742 -2.1832 3.2440 40 1 0.2835 -4.7934 3.2937 41 1 0.7397 -3.6074 2.0334 42 1 -0.6634 -3.0500 4.4899 43 1 -0.0084 -1.8477 3.3401 44 1 0.9239 -2.1005 5.9631 45 1 1.9608 -1.5171 4.6185 46 1 6.9638 -4.6089 6.4687 47 1 4.1400 -5.8265 5.4267 48 1 4.9689 -4.7174 4.2983 49 1 3.4460 -5.5976 2.7223 50 1 2.2707 -6.0828 3.9922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992166426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:55 Heat of formation + Delta-G solvation = -14.191860 kcal Electronic energy + Delta-G solvation = -31845.161582 eV Core-core repulsion = 27873.925538 eV Total energy + Delta-G solvation = -3971.236045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06602 -41.11848 -39.41892 -36.93603 -36.38168 -36.15483 -34.31178 -33.52022 -31.57548 -29.34919 -28.55761 -27.60895 -27.37269 -25.99583 -25.28991 -24.05935 -22.25755 -21.52067 -21.19879 -20.27198 -19.86013 -18.80895 -18.34014 -17.57518 -17.37744 -16.67633 -16.58934 -16.38895 -16.13116 -15.90394 -15.70293 -15.49776 -15.08670 -14.61577 -14.20970 -14.10912 -13.98522 -13.91950 -13.54931 -13.46096 -13.41028 -13.07453 -12.96364 -12.91609 -12.85411 -12.77452 -12.59541 -12.20373 -12.15748 -12.05183 -11.78291 -11.61414 -11.55520 -11.54978 -11.38617 -11.05201 -10.87096 -10.69660 -10.43783 -9.78179 -9.60679 -8.86224 -7.81269 -5.17866 1.27116 1.48723 1.51596 1.57870 1.95140 2.06206 2.33353 2.52238 2.92556 3.10385 3.37655 3.51588 3.67258 3.76264 3.79926 3.88585 3.95649 4.08564 4.24034 4.32354 4.33216 4.38721 4.42849 4.44523 4.53280 4.56849 4.60380 4.72436 4.80178 4.80627 4.82189 4.90383 4.94063 4.95801 4.98761 5.08060 5.09720 5.10913 5.21048 5.26154 5.47159 5.55578 5.58563 5.60330 5.68824 5.89044 6.18776 6.36070 6.79305 7.05294 7.21573 7.52483 7.77977 8.51812 9.30522 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.004214 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.420865 B = 6643.199648 C = 6838.003725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.619 5.619 3 C 0.070 3.930 4 C 0.521 3.479 5 O -0.561 6.561 6 C -0.157 4.157 7 H 0.169 0.831 8 C -0.107 4.107 9 C -0.175 4.175 10 H 0.151 0.849 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.685 5.685 14 C 0.144 3.856 15 C -0.108 4.108 16 C -0.097 4.097 17 C -0.104 4.104 18 C 0.148 3.852 19 H 0.011 0.989 20 N -0.594 5.594 21 C -0.234 4.234 22 H 0.089 0.911 23 C -0.062 4.062 24 N -0.952 5.952 25 Si 0.976 3.024 26 H -0.281 1.281 27 H -0.301 1.301 28 H -0.271 1.271 29 C 0.196 3.804 30 C -0.133 4.133 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.245 0.755 47 H -0.001 1.001 48 H 0.030 0.970 49 H 0.062 0.938 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 15.567 -13.577 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.353 5.353 3 C -0.071 4.071 4 C 0.310 3.690 5 O -0.440 6.440 6 C -0.179 4.179 7 H 0.187 0.813 8 C -0.145 4.145 9 C -0.196 4.196 10 H 0.169 0.831 11 C 0.331 3.669 12 O -0.449 6.449 13 N -0.334 5.334 14 C 0.056 3.944 15 C -0.147 4.147 16 C -0.135 4.135 17 C -0.142 4.142 18 C 0.039 3.961 19 H 0.028 0.972 20 N -0.317 5.317 21 C -0.362 4.362 22 H 0.107 0.893 23 C -0.255 4.255 24 N -0.601 5.601 25 Si 0.805 3.195 26 H -0.207 1.207 27 H -0.227 1.227 28 H -0.197 1.197 29 C 0.072 3.928 30 C -0.172 4.172 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.167 0.833 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.017 0.983 48 H 0.049 0.951 49 H 0.081 0.919 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.915 14.322 -13.816 21.806 hybrid contribution 0.964 0.040 1.151 1.502 sum -7.952 14.363 -12.665 20.734 Atomic orbital electron populations 1.21717 0.78701 1.03342 1.01955 1.47767 1.07531 1.06701 1.73252 1.22119 0.98137 0.83843 1.03027 1.20106 0.89407 0.83563 0.75947 1.90796 1.70490 1.32464 1.50228 1.22541 0.91289 0.97931 1.06093 0.81325 1.23034 1.02843 0.97349 0.91269 1.22328 1.01382 0.99386 0.96529 0.83107 1.19810 0.79235 0.86615 0.81257 1.90589 1.57369 1.29081 1.67871 1.45468 1.51837 1.22989 1.13146 1.21363 0.89720 0.89000 0.94301 1.21848 0.93490 0.99580 0.99811 1.22677 0.97507 0.97370 0.95903 1.21797 0.96513 0.96177 0.99735 1.21003 0.87181 0.97192 0.90754 0.97154 1.43739 1.10294 1.33646 1.43986 1.19364 0.95083 1.09115 1.12652 0.89342 1.25598 0.98027 0.99627 1.02208 1.70156 1.12357 1.31226 1.46314 0.85190 0.76992 0.78354 0.78986 1.20740 1.22718 1.19696 1.21614 0.93825 0.87811 0.89588 1.22665 0.98978 0.96751 0.98819 0.92900 0.88036 0.93009 0.90293 0.88217 0.91213 0.83298 0.89864 0.76712 0.91188 0.92378 0.89918 0.91193 0.90713 0.91786 0.94581 0.98322 0.95144 0.91903 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.41 127.77 1.33 2.74 16 2 N -0.62 -11.34 3.27 -871.88 -2.85 -14.19 16 3 C 0.07 0.62 9.31 127.77 1.19 1.81 16 4 C 0.52 13.61 7.14 87.66 0.63 14.23 16 5 O -0.56 -20.33 13.52 8.39 0.11 -20.21 16 6 C -0.16 -3.28 5.66 -11.54 -0.07 -3.35 16 7 H 0.17 1.99 6.53 -2.39 -0.02 1.97 16 8 C -0.11 -2.47 9.58 30.60 0.29 -2.18 16 9 C -0.17 -4.85 6.18 -11.54 -0.07 -4.92 16 10 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 11 C 0.54 20.84 4.95 87.66 0.43 21.27 16 12 O -0.57 -26.12 14.20 8.39 0.12 -26.00 16 13 N -0.69 -26.15 4.49 -419.64 -1.89 -28.03 16 14 C 0.14 5.76 0.43 4.33 0.00 5.77 16 15 C -0.11 -3.82 6.18 30.94 0.19 -3.63 16 16 C -0.10 -2.76 6.93 32.67 0.23 -2.54 16 17 C -0.10 -3.40 6.46 30.93 0.20 -3.20 16 18 C 0.15 6.14 2.67 46.48 0.12 6.26 16 19 H 0.01 0.48 7.94 -2.39 -0.02 0.46 16 20 N -0.59 -29.98 3.16 -668.60 -2.11 -32.09 16 21 C -0.23 -12.51 10.29 84.03 0.86 -11.65 16 22 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 23 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 24 N -0.95 -57.00 10.55 21.65 0.23 -56.77 16 25 Si 0.98 44.46 29.55 68.60 2.03 46.49 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 C 0.20 10.30 5.33 86.96 0.46 10.76 16 30 C -0.13 -6.01 6.08 31.43 0.19 -5.82 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.94 7.92 -2.39 -0.02 0.92 16 33 H 0.05 1.12 7.42 -2.39 -0.02 1.10 16 34 H 0.08 0.46 7.82 -2.39 -0.02 0.44 16 35 H 0.10 0.45 7.79 -2.38 -0.02 0.43 16 36 H 0.07 0.58 7.89 -2.39 -0.02 0.57 16 37 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 2.51 7.71 -2.39 -0.02 2.49 16 39 H 0.40 14.75 7.56 -92.71 -0.70 14.05 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.31 7.29 -2.39 -0.02 2.29 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.06 2.08 7.17 -2.39 -0.02 2.07 16 46 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 47 H 0.00 -0.08 7.98 -2.39 -0.02 -0.10 16 48 H 0.03 1.78 7.05 -2.39 -0.02 1.76 16 49 H 0.06 3.01 6.27 -2.39 -0.01 3.00 16 50 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -78.90 388.79 2.34 -76.56 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.24 Total: 31.63 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.47 Total: 22.62 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -6.63 Total: -131.09 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: 0.23 Total: -46.21 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -78.90 2.34 -76.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992166426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.370 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds