Wall clock time and date at job start Tue Mar 31 2020 18:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00013 * 2 1 4 4 C 1.46898 * 111.00047 * 123.95639 * 2 1 3 5 5 C 1.50707 * 109.47341 * 173.19560 * 4 2 1 6 6 C 1.40359 * 126.64689 * 104.80510 * 5 4 2 7 7 C 1.35126 * 107.11394 * 180.15919 * 6 5 4 8 8 O 1.33931 * 108.76656 * 359.58573 * 7 6 5 9 9 C 1.34910 * 109.38556 * 0.26625 * 8 7 6 10 10 C 1.46650 * 125.98921 * 179.97438 * 9 8 7 11 11 O 1.21694 * 120.00566 * 172.12493 * 10 9 8 12 12 N 1.34785 * 120.00028 * 352.11459 * 10 9 8 13 13 C 1.46497 * 119.99869 * 4.31954 * 12 10 9 14 14 C 1.46503 * 120.00028 * 184.31230 * 12 10 9 15 15 C 1.53040 * 109.45658 * 240.03008 * 14 12 10 16 16 C 1.53201 * 109.30774 * 178.60331 * 15 14 12 17 17 N 1.46928 * 108.76341 * 54.65680 * 16 15 14 18 18 C 1.36930 * 120.62665 * 126.40588 * 17 16 15 19 19 H 1.08002 * 120.00341 * 323.02416 * 18 17 16 20 20 C 1.38819 * 119.99948 * 143.02630 * 18 17 16 21 21 N 1.31614 * 120.00244 * 169.73630 * 20 18 17 22 22 Si 1.86798 * 119.99735 * 349.73013 * 20 18 17 23 23 H 1.48504 * 109.47175 * 84.96026 * 22 20 18 24 24 H 1.48504 * 109.47166 * 204.95738 * 22 20 18 25 25 H 1.48498 * 109.47180 * 324.96125 * 22 20 18 26 26 C 1.46923 * 118.73775 * 306.37885 * 17 16 15 27 27 C 1.53036 * 109.45798 * 119.97587 * 14 12 10 28 28 H 1.08999 * 109.47147 * 296.04425 * 1 2 3 29 29 H 1.09002 * 109.47133 * 56.04379 * 1 2 3 30 30 H 1.09001 * 109.46908 * 176.03891 * 1 2 3 31 31 H 1.09001 * 109.47532 * 179.31394 * 3 2 1 32 32 H 1.09001 * 109.47457 * 299.31659 * 3 2 1 33 33 H 1.09000 * 109.46544 * 59.31740 * 3 2 1 34 34 H 1.08996 * 109.47173 * 53.19207 * 4 2 1 35 35 H 1.09006 * 109.47264 * 293.19286 * 4 2 1 36 36 H 1.08004 * 126.44164 * 0.02562 * 6 5 4 37 37 H 1.08000 * 125.61587 * 179.85267 * 7 6 5 38 38 H 1.08999 * 109.47398 * 83.83525 * 13 12 10 39 39 H 1.09001 * 109.47220 * 203.84034 * 13 12 10 40 40 H 1.09012 * 109.46766 * 323.83524 * 13 12 10 41 41 H 1.09000 * 109.45966 * 0.02562 * 14 12 10 42 42 H 1.09002 * 109.50326 * 298.56368 * 15 14 12 43 43 H 1.08998 * 109.49851 * 58.66808 * 15 14 12 44 44 H 1.08997 * 109.59835 * 294.86226 * 16 15 14 45 45 H 1.09002 * 109.69980 * 174.50667 * 16 15 14 46 46 H 0.97006 * 120.00271 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.58653 * 293.82610 * 26 17 16 48 48 H 1.09000 * 109.70377 * 173.46865 * 26 17 16 49 49 H 1.08995 * 109.49856 * 301.33976 * 27 14 12 50 50 H 1.09004 * 109.49694 * 61.40160 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4926 -0.8852 1.0132 6 6 4.4536 -0.1801 1.7543 7 6 5.6671 -0.5877 1.3217 8 8 5.4963 -1.5087 0.3644 9 6 4.1770 -1.7043 0.1615 10 6 3.5821 -2.6333 -0.8047 11 8 2.3811 -2.8297 -0.8001 12 7 4.3654 -3.2696 -1.6981 13 6 5.8203 -3.1067 -1.6434 14 6 3.7620 -4.1242 -2.7236 15 6 4.2884 -5.5531 -2.5708 16 6 3.6290 -6.4511 -3.6224 17 7 3.8520 -5.8650 -4.9511 18 6 4.4091 -6.6086 -5.9570 19 1 5.1896 -7.3208 -5.7334 20 6 3.9706 -6.4469 -7.2642 21 7 4.6341 -7.0047 -8.2546 22 14 2.4388 -5.4379 -7.6174 23 1 2.8032 -4.0013 -7.7117 24 1 1.8389 -5.8816 -8.9014 25 1 1.4566 -5.6284 -6.5201 26 6 3.4654 -4.4662 -5.1801 27 6 4.1262 -3.5906 -4.1109 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0850 1.3425 0.0123 32 1 1.6559 1.8910 -0.8960 33 1 1.6360 1.8985 0.8838 34 1 1.5509 -1.7612 1.1423 35 1 1.7478 -0.2530 2.0669 36 1 4.2596 0.5524 2.5240 37 1 6.6182 -0.2327 1.6904 38 1 6.2366 -3.8011 -0.9137 39 1 6.2461 -3.3129 -2.6254 40 1 6.0607 -2.0845 -1.3506 41 1 2.6783 -4.1216 -2.6069 42 1 5.3691 -5.5599 -2.7124 43 1 4.0492 -5.9243 -1.5742 44 1 2.5587 -6.5175 -3.4272 45 1 4.0700 -7.4472 -3.5837 46 1 4.3279 -6.8915 -9.1681 47 1 2.3817 -4.3707 -5.1120 48 1 3.7986 -4.1499 -6.1686 49 1 3.7718 -2.5647 -4.2106 50 1 5.2086 -3.6154 -4.2376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005891801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:09 Heat of formation + Delta-G solvation = 27.086199 kcal Electronic energy + Delta-G solvation = -30496.855642 eV Core-core repulsion = 26527.409548 eV Total energy + Delta-G solvation = -3969.446094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.96035 -39.75231 -37.84174 -37.39826 -35.27007 -33.45668 -32.48874 -30.86174 -30.37566 -29.85698 -27.70848 -27.52046 -26.85235 -25.12792 -23.29434 -22.74083 -22.27818 -21.89105 -20.87370 -19.41964 -19.11192 -17.54445 -16.82478 -16.77453 -16.49501 -15.97777 -15.38612 -15.35092 -15.07536 -14.79286 -14.73455 -14.14085 -13.92872 -13.72726 -13.45031 -13.36608 -13.04836 -12.95135 -12.86125 -12.65539 -12.39118 -12.32577 -11.95922 -11.90028 -11.83930 -11.82090 -11.73789 -11.66813 -10.86615 -10.81364 -10.51310 -10.16864 -10.12913 -10.04260 -9.91712 -9.65364 -9.53962 -8.86107 -8.60849 -8.45068 -8.37606 -6.82784 -5.93217 -3.41698 0.95423 2.09504 2.54181 3.12109 3.23072 3.34062 3.49764 3.53791 3.93791 4.41571 4.47427 4.54158 4.63694 5.00051 5.01868 5.07526 5.15802 5.17288 5.22631 5.27454 5.31237 5.33719 5.39168 5.41863 5.50189 5.59648 5.65132 5.70552 5.70978 5.78921 5.81077 5.85369 5.95563 6.06354 6.09036 6.11228 6.24104 6.34621 6.45190 6.61246 6.64378 6.67627 6.70533 6.81994 6.88619 6.90616 6.93502 7.47156 8.07385 8.18191 8.38151 8.96361 9.72220 10.14186 11.22583 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.003145 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.586316 B = 8900.095621 C = 9829.769177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.532 5.532 3 C 0.024 3.976 4 C 0.123 3.877 5 C -0.097 4.097 6 C -0.220 4.220 7 C -0.020 4.020 8 O -0.156 6.156 9 C -0.046 4.046 10 C 0.597 3.403 11 O -0.507 6.507 12 N -0.600 5.600 13 C 0.073 3.927 14 C 0.148 3.852 15 C -0.139 4.139 16 C 0.151 3.849 17 N -0.608 5.608 18 C -0.263 4.263 19 H 0.082 0.918 20 C 0.028 3.972 21 N -0.914 5.914 22 Si 0.893 3.107 23 H -0.285 1.285 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.126 3.874 27 C -0.140 4.140 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.097 0.903 35 H 0.039 0.961 36 H 0.151 0.849 37 H 0.207 0.793 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.263 0.737 47 H 0.027 0.973 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 16.588 22.090 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.256 5.256 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.100 4.100 6 C -0.239 4.239 7 C -0.089 4.089 8 O -0.052 6.052 9 C -0.099 4.099 10 C 0.385 3.615 11 O -0.383 6.383 12 N -0.332 5.332 13 C -0.069 4.069 14 C 0.046 3.954 15 C -0.179 4.179 16 C 0.025 3.975 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.100 0.900 20 C -0.171 4.171 21 N -0.557 5.557 22 Si 0.723 3.277 23 H -0.213 1.213 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.000 4.000 27 C -0.180 4.180 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.168 0.832 37 H 0.223 0.777 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.329 16.014 21.276 26.631 hybrid contribution -0.807 1.323 0.640 1.677 sum -1.135 17.337 21.916 27.967 Atomic orbital electron populations 1.22337 0.86722 1.02786 0.99984 1.61862 1.07977 1.13188 1.42549 1.22412 1.00869 0.88911 1.00244 1.20502 0.88705 1.00009 0.91212 1.20332 0.96527 0.96786 0.96339 1.21676 0.91988 1.05310 1.04929 1.24349 1.00331 0.92772 0.91482 1.84350 1.25865 1.48642 1.46305 1.22074 0.80311 1.04171 1.03297 1.16622 0.85953 0.79314 0.79660 1.90850 1.13186 1.63491 1.70803 1.48001 1.07262 1.46790 1.31152 1.21952 0.79864 1.02067 1.03044 1.21179 0.99113 0.89158 0.85950 1.22373 1.01385 0.94641 0.99532 1.20920 0.96816 0.95419 0.84381 1.44338 1.73039 1.06716 1.09080 1.18872 1.14772 1.19479 0.86008 0.90014 1.25506 0.97663 0.97904 0.96062 1.69757 1.40061 1.46693 0.99150 0.86833 0.84903 0.79222 0.76696 1.21269 1.23183 1.19454 1.21392 0.96373 0.84934 0.97265 1.22391 1.01908 0.99028 0.94633 0.96054 0.91375 0.90823 0.91468 0.91536 0.96016 0.88448 0.94296 0.83156 0.77672 0.92584 0.90073 0.90495 0.88374 0.91663 0.92461 0.95706 0.91443 0.92698 0.95490 0.90656 0.92494 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.06 0.58 0.88 16 2 N -0.53 -6.34 5.03 -252.72 -1.27 -7.62 16 3 C 0.02 0.24 9.42 60.07 0.57 0.80 16 4 C 0.12 1.41 4.58 -4.97 -0.02 1.38 16 5 C -0.10 -1.12 4.51 -104.43 -0.47 -1.59 16 6 C -0.22 -1.89 10.34 -39.89 -0.41 -2.30 16 7 C -0.02 -0.15 12.08 29.63 0.36 0.20 16 8 O -0.16 -1.68 7.29 5.01 0.04 -1.64 16 9 C -0.05 -0.60 6.76 -36.80 -0.25 -0.85 16 10 C 0.60 9.33 7.63 -12.86 -0.10 9.23 16 11 O -0.51 -9.09 14.42 5.19 0.07 -9.02 16 12 N -0.60 -8.97 2.76 -175.43 -0.48 -9.46 16 13 C 0.07 0.89 8.70 59.85 0.52 1.41 16 14 C 0.15 2.51 2.47 -67.89 -0.17 2.34 16 15 C -0.14 -2.35 5.34 -26.61 -0.14 -2.49 16 16 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 17 N -0.61 -14.45 2.67 -172.32 -0.46 -14.91 16 18 C -0.26 -7.33 10.01 -15.06 -0.15 -7.48 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 20 C 0.03 0.81 5.35 -17.43 -0.09 0.72 16 21 N -0.91 -28.09 13.97 55.49 0.78 -27.32 16 22 Si 0.89 22.78 24.30 -169.99 -4.13 18.65 16 23 H -0.29 -6.98 6.48 56.52 0.37 -6.61 16 24 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 25 H -0.27 -6.82 6.68 56.52 0.38 -6.44 16 26 C 0.13 2.78 4.17 -3.71 -0.02 2.77 16 27 C -0.14 -2.53 5.32 -26.61 -0.14 -2.67 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.68 6.64 -51.93 -0.35 0.34 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.10 1.27 7.10 -51.93 -0.37 0.90 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.21 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.99 6.47 -51.93 -0.34 0.66 16 40 H 0.08 0.86 5.38 -51.92 -0.28 0.58 16 41 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 42 H 0.06 1.10 7.72 -51.93 -0.40 0.69 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.03 0.60 6.90 -51.93 -0.36 0.25 16 48 H 0.08 1.79 4.89 -51.93 -0.25 1.54 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 1.21 6.72 -51.93 -0.35 0.86 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -32.93 384.07 -7.79 -40.72 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.15 Total: -0.55 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 0.03 Total: 5.36 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -1.44 Total: -59.30 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.11 Total: -10.66 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.13 Total: 18.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.93 -7.79 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005891801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.808 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds