Wall clock time and date at job start Tue Mar 31 2020 18:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00013 * 2 1 4 4 C 1.46898 * 111.00047 * 123.95639 * 2 1 3 5 5 C 1.50707 * 109.47341 * 173.19560 * 4 2 1 6 6 C 1.40359 * 126.64689 * 104.80510 * 5 4 2 7 7 C 1.35126 * 107.11394 * 180.15919 * 6 5 4 8 8 O 1.33931 * 108.76656 * 359.58573 * 7 6 5 9 9 C 1.34910 * 109.38556 * 0.26625 * 8 7 6 10 10 C 1.46650 * 125.98921 * 179.97438 * 9 8 7 11 11 O 1.21694 * 120.00566 * 172.12493 * 10 9 8 12 12 N 1.34785 * 120.00028 * 352.11459 * 10 9 8 13 13 C 1.46497 * 119.99869 * 4.31954 * 12 10 9 14 14 C 1.46503 * 120.00028 * 184.31230 * 12 10 9 15 15 C 1.53040 * 109.45658 * 240.03008 * 14 12 10 16 16 C 1.53201 * 109.30774 * 178.60331 * 15 14 12 17 17 N 1.46928 * 108.76341 * 54.65680 * 16 15 14 18 18 C 1.36930 * 120.62665 * 126.40588 * 17 16 15 19 19 H 1.08002 * 120.00341 * 323.02416 * 18 17 16 20 20 C 1.38819 * 119.99948 * 143.02630 * 18 17 16 21 21 N 1.31614 * 120.00244 * 169.73630 * 20 18 17 22 22 Si 1.86798 * 119.99735 * 349.73013 * 20 18 17 23 23 H 1.48504 * 109.47175 * 84.96026 * 22 20 18 24 24 H 1.48504 * 109.47166 * 204.95738 * 22 20 18 25 25 H 1.48498 * 109.47180 * 324.96125 * 22 20 18 26 26 C 1.46923 * 118.73775 * 306.37885 * 17 16 15 27 27 C 1.53036 * 109.45798 * 119.97587 * 14 12 10 28 28 H 1.08999 * 109.47147 * 296.04425 * 1 2 3 29 29 H 1.09002 * 109.47133 * 56.04379 * 1 2 3 30 30 H 1.09001 * 109.46908 * 176.03891 * 1 2 3 31 31 H 1.09001 * 109.47532 * 179.31394 * 3 2 1 32 32 H 1.09001 * 109.47457 * 299.31659 * 3 2 1 33 33 H 1.09000 * 109.46544 * 59.31740 * 3 2 1 34 34 H 1.08996 * 109.47173 * 53.19207 * 4 2 1 35 35 H 1.09006 * 109.47264 * 293.19286 * 4 2 1 36 36 H 1.08004 * 126.44164 * 0.02562 * 6 5 4 37 37 H 1.08000 * 125.61587 * 179.85267 * 7 6 5 38 38 H 1.08999 * 109.47398 * 83.83525 * 13 12 10 39 39 H 1.09001 * 109.47220 * 203.84034 * 13 12 10 40 40 H 1.09012 * 109.46766 * 323.83524 * 13 12 10 41 41 H 1.09000 * 109.45966 * 0.02562 * 14 12 10 42 42 H 1.09002 * 109.50326 * 298.56368 * 15 14 12 43 43 H 1.08998 * 109.49851 * 58.66808 * 15 14 12 44 44 H 1.08997 * 109.59835 * 294.86226 * 16 15 14 45 45 H 1.09002 * 109.69980 * 174.50667 * 16 15 14 46 46 H 0.97006 * 120.00271 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.58653 * 293.82610 * 26 17 16 48 48 H 1.09000 * 109.70377 * 173.46865 * 26 17 16 49 49 H 1.08995 * 109.49856 * 301.33976 * 27 14 12 50 50 H 1.09004 * 109.49694 * 61.40160 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4926 -0.8852 1.0132 6 6 4.4536 -0.1801 1.7543 7 6 5.6671 -0.5877 1.3217 8 8 5.4963 -1.5087 0.3644 9 6 4.1770 -1.7043 0.1615 10 6 3.5821 -2.6333 -0.8047 11 8 2.3811 -2.8297 -0.8001 12 7 4.3654 -3.2696 -1.6981 13 6 5.8203 -3.1067 -1.6434 14 6 3.7620 -4.1242 -2.7236 15 6 4.2884 -5.5531 -2.5708 16 6 3.6290 -6.4511 -3.6224 17 7 3.8520 -5.8650 -4.9511 18 6 4.4091 -6.6086 -5.9570 19 1 5.1896 -7.3208 -5.7334 20 6 3.9706 -6.4469 -7.2642 21 7 4.6341 -7.0047 -8.2546 22 14 2.4388 -5.4379 -7.6174 23 1 2.8032 -4.0013 -7.7117 24 1 1.8389 -5.8816 -8.9014 25 1 1.4566 -5.6284 -6.5201 26 6 3.4654 -4.4662 -5.1801 27 6 4.1262 -3.5906 -4.1109 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0710 31 1 3.0850 1.3425 0.0123 32 1 1.6559 1.8910 -0.8960 33 1 1.6360 1.8985 0.8838 34 1 1.5509 -1.7612 1.1423 35 1 1.7478 -0.2530 2.0669 36 1 4.2596 0.5524 2.5240 37 1 6.6182 -0.2327 1.6904 38 1 6.2366 -3.8011 -0.9137 39 1 6.2461 -3.3129 -2.6254 40 1 6.0607 -2.0845 -1.3506 41 1 2.6783 -4.1216 -2.6069 42 1 5.3691 -5.5599 -2.7124 43 1 4.0492 -5.9243 -1.5742 44 1 2.5587 -6.5175 -3.4272 45 1 4.0700 -7.4472 -3.5837 46 1 4.3279 -6.8915 -9.1681 47 1 2.3817 -4.3707 -5.1120 48 1 3.7986 -4.1499 -6.1686 49 1 3.7718 -2.5647 -4.2106 50 1 5.2086 -3.6154 -4.2376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005891801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:08 Heat of formation + Delta-G solvation = 4.491804 kcal Electronic energy + Delta-G solvation = -30497.835408 eV Core-core repulsion = 26527.409548 eV Total energy + Delta-G solvation = -3970.425860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.72323 -40.98452 -39.16342 -38.42045 -36.65839 -34.48082 -34.13665 -32.43508 -31.98806 -30.88145 -28.48455 -28.40856 -27.99188 -26.76038 -24.64040 -24.25254 -23.30225 -22.90338 -22.01492 -20.75706 -20.22402 -18.83644 -18.45533 -17.75007 -17.57528 -17.15747 -16.74072 -16.23173 -16.15786 -15.96056 -15.86310 -15.56926 -15.38284 -15.14164 -14.67050 -14.55924 -14.33636 -14.21247 -14.05227 -13.88573 -13.70466 -13.45170 -13.40573 -13.15279 -12.80932 -12.70989 -12.65261 -12.63819 -12.51927 -12.44977 -12.18553 -12.00997 -11.77675 -11.52969 -11.37730 -11.11000 -10.77742 -10.71226 -9.78595 -9.45723 -9.23766 -8.82525 -8.17342 -5.62496 0.08859 1.29646 1.40369 1.42407 1.49546 1.64975 2.10504 2.19296 2.40334 3.10971 3.15680 3.28083 3.54517 3.70691 3.82647 3.91950 3.95522 4.18301 4.23734 4.25649 4.30744 4.34835 4.44846 4.48065 4.51141 4.53949 4.60479 4.63242 4.68377 4.70478 4.74769 4.83366 4.85018 4.91214 4.97043 5.00394 5.03758 5.04817 5.06465 5.08967 5.14809 5.38167 5.40827 5.54226 5.92184 5.93176 6.07667 6.13737 6.15520 6.36621 6.92224 7.05613 7.58252 8.04018 9.02126 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.003145 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.586316 B = 8900.095621 C = 9829.769177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.558 5.558 3 C 0.028 3.972 4 C 0.125 3.875 5 C -0.093 4.093 6 C -0.228 4.228 7 C 0.005 3.995 8 O -0.162 6.162 9 C -0.083 4.083 10 C 0.593 3.407 11 O -0.542 6.542 12 N -0.602 5.602 13 C 0.074 3.926 14 C 0.157 3.843 15 C -0.124 4.124 16 C 0.147 3.853 17 N -0.620 5.620 18 C -0.250 4.250 19 H 0.052 0.948 20 C -0.026 4.026 21 N -0.959 5.959 22 Si 0.949 3.051 23 H -0.269 1.269 24 H -0.309 1.309 25 H -0.267 1.267 26 C 0.123 3.877 27 C -0.127 4.127 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.177 0.823 37 H 0.253 0.747 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.029 0.971 45 H 0.064 0.936 46 H 0.263 0.737 47 H 0.027 0.973 48 H 0.057 0.943 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 19.338 24.843 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.283 5.283 3 C -0.119 4.119 4 C -0.003 4.003 5 C -0.097 4.097 6 C -0.247 4.247 7 C -0.063 4.063 8 O -0.058 6.058 9 C -0.135 4.135 10 C 0.383 3.617 11 O -0.422 6.422 12 N -0.333 5.333 13 C -0.067 4.067 14 C 0.053 3.947 15 C -0.164 4.164 16 C 0.022 3.978 17 N -0.345 5.345 18 C -0.379 4.379 19 H 0.070 0.930 20 C -0.221 4.221 21 N -0.604 5.604 22 Si 0.778 3.222 23 H -0.195 1.195 24 H -0.238 1.238 25 H -0.191 1.191 26 C -0.002 4.002 27 C -0.166 4.166 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.195 0.805 37 H 0.269 0.731 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.365 18.790 24.075 30.542 hybrid contribution -0.941 0.501 -0.062 1.068 sum -0.575 19.292 24.013 30.808 Atomic orbital electron populations 1.22299 0.86179 1.02046 1.01031 1.61827 1.08790 1.14458 1.43195 1.22378 1.00554 0.87970 1.01044 1.20435 0.88870 0.98999 0.91969 1.20598 0.96871 0.96308 0.95908 1.21976 0.91404 1.05851 1.05474 1.25321 1.01952 0.90113 0.88963 1.84308 1.24560 1.49575 1.47322 1.21557 0.81545 1.05745 1.04683 1.16954 0.85667 0.79282 0.79844 1.90823 1.14661 1.64725 1.71953 1.47943 1.08362 1.46458 1.30534 1.22080 0.78014 1.03314 1.03316 1.20849 0.98245 0.89536 0.86022 1.22179 1.01098 0.93987 0.99114 1.21055 0.97391 0.95999 0.83401 1.44444 1.73058 1.07485 1.09479 1.18797 1.13505 1.18590 0.87053 0.93031 1.26106 1.00303 0.99708 0.95999 1.69883 1.41841 1.49196 0.99525 0.85904 0.81436 0.78760 0.76063 1.19501 1.23756 1.19140 1.21370 0.96540 0.84543 0.97759 1.22203 1.01695 0.98683 0.94068 0.94347 0.90968 0.92405 0.91807 0.91475 0.94396 0.90901 0.92422 0.80548 0.73084 0.91368 0.90293 0.89191 0.90219 0.91306 0.90695 0.95308 0.91725 0.92815 0.95552 0.92483 0.91386 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.59 127.69 1.22 1.86 16 2 N -0.56 -12.76 5.03 -953.45 -4.80 -17.56 16 3 C 0.03 0.50 9.42 127.69 1.20 1.70 16 4 C 0.12 2.72 4.58 85.56 0.39 3.11 16 5 C -0.09 -1.97 4.51 -19.74 -0.09 -2.06 16 6 C -0.23 -3.04 10.34 22.07 0.23 -2.81 16 7 C 0.01 0.06 12.08 67.10 0.81 0.87 16 8 O -0.16 -2.98 7.29 -4.99 -0.04 -3.01 16 9 C -0.08 -2.03 6.76 24.07 0.16 -1.87 16 10 C 0.59 18.15 7.63 86.44 0.66 18.81 16 11 O -0.54 -19.73 14.42 -4.33 -0.06 -19.79 16 12 N -0.60 -17.24 2.76 -827.16 -2.28 -19.53 16 13 C 0.07 1.64 8.70 127.77 1.11 2.76 16 14 C 0.16 5.17 2.47 45.02 0.11 5.28 16 15 C -0.12 -4.03 5.34 30.67 0.16 -3.87 16 16 C 0.15 5.83 6.52 86.37 0.56 6.39 16 17 N -0.62 -29.51 2.67 -699.09 -1.87 -31.38 16 18 C -0.25 -14.22 10.01 84.04 0.84 -13.38 16 19 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 20 C -0.03 -1.52 5.35 84.86 0.45 -1.07 16 21 N -0.96 -60.52 13.97 21.65 0.30 -60.22 16 22 Si 0.95 47.65 24.30 68.60 1.67 49.32 16 23 H -0.27 -12.65 6.48 99.48 0.64 -12.01 16 24 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 25 H -0.27 -13.10 6.68 99.48 0.66 -12.44 16 26 C 0.12 5.36 4.17 86.36 0.36 5.72 16 27 C -0.13 -4.46 5.32 30.67 0.16 -4.29 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.15 6.64 -2.39 -0.02 1.13 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.53 8.14 -2.39 -0.02 0.52 16 34 H 0.07 1.93 7.10 -2.39 -0.02 1.92 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.25 0.17 8.06 -2.91 -0.02 0.15 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.77 6.47 -2.39 -0.02 1.76 16 40 H 0.09 1.77 5.38 -2.38 -0.01 1.76 16 41 H 0.08 2.98 6.90 -2.39 -0.02 2.96 16 42 H 0.07 2.21 7.72 -2.39 -0.02 2.19 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 46 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 47 H 0.03 1.16 6.90 -2.39 -0.02 1.14 16 48 H 0.06 2.68 4.89 -2.39 -0.01 2.67 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 2.47 6.72 -2.39 -0.02 2.46 16 Total: -1.00 -73.69 384.07 2.10 -71.59 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.82 Total: 13.43 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 8.36 Total: 17.15 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -8.65 Total: -128.68 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.10 Total: -22.81 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.67 Total: 49.32 kcal Total: -73.69 2.10 -71.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005891801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.082 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds