Wall clock time and date at job start Tue Mar 31 2020 18:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00267 * 2 1 4 4 C 1.34778 * 119.99485 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00542 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99625 * 180.02562 * 4 2 1 7 7 H 1.09003 * 115.56038 * 309.46319 * 6 4 2 8 8 C 1.53074 * 117.51450 * 163.76612 * 6 4 2 9 9 C 1.52996 * 117.50181 * 95.15502 * 6 4 2 10 10 H 1.09000 * 117.50226 * 214.99856 * 9 6 4 11 11 C 1.50703 * 117.49778 * 0.02562 * 9 6 4 12 12 O 1.21283 * 120.00110 * 46.20246 * 11 9 6 13 13 N 1.34774 * 120.00054 * 226.20617 * 11 9 6 14 14 C 1.46497 * 120.00317 * 179.97438 * 13 11 9 15 15 H 1.08999 * 115.56533 * 9.29018 * 14 13 11 16 16 C 1.53040 * 117.50079 * 223.58601 * 14 13 11 17 17 C 1.52816 * 117.50536 * 154.99938 * 14 13 11 18 18 C 1.53191 * 117.71234 * 359.86045 * 17 14 13 19 19 C 1.53353 * 108.76551 * 158.87746 * 18 17 14 20 20 N 1.46840 * 108.81390 * 51.30956 * 19 18 17 21 21 C 1.36928 * 120.38290 * 123.10824 * 20 19 18 22 22 H 1.08000 * 120.00149 * 339.87307 * 21 20 19 23 23 C 1.38812 * 120.00400 * 159.59149 * 21 20 19 24 24 N 1.31621 * 119.99897 * 329.87007 * 23 21 20 25 25 Si 1.86799 * 119.99878 * 149.86196 * 23 21 20 26 26 H 1.48501 * 109.47109 * 90.00876 * 25 23 21 27 27 H 1.48506 * 109.47057 * 210.00362 * 25 23 21 28 28 H 1.48492 * 109.47674 * 330.00376 * 25 23 21 29 29 C 1.46847 * 119.23807 * 303.37733 * 20 19 18 30 30 C 1.52862 * 109.07959 * 56.58391 * 29 20 19 31 31 H 1.08998 * 109.47141 * 240.00533 * 1 2 3 32 32 H 1.08998 * 109.46817 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.47270 * 119.99939 * 1 2 3 34 34 H 1.08998 * 109.46957 * 269.99889 * 3 2 1 35 35 H 1.09002 * 109.47056 * 30.00281 * 3 2 1 36 36 H 1.08998 * 109.47398 * 150.00137 * 3 2 1 37 37 H 1.08997 * 117.49872 * 145.03488 * 8 6 4 38 38 H 1.08998 * 117.53135 * 359.97438 * 8 6 4 39 39 H 0.97000 * 119.99840 * 359.97438 * 13 11 9 40 40 H 1.08996 * 117.50243 * 145.04425 * 16 14 13 41 41 H 1.08993 * 117.53296 * 359.97438 * 16 14 13 42 42 H 1.08998 * 109.59126 * 39.09140 * 18 17 14 43 43 H 1.09004 * 109.58731 * 278.66015 * 18 17 14 44 44 H 1.08997 * 109.57950 * 291.50619 * 19 18 17 45 45 H 1.08998 * 109.69081 * 171.16942 * 19 18 17 46 46 H 0.97005 * 119.99967 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.58087 * 176.42244 * 29 20 19 48 48 H 1.09000 * 109.57817 * 296.81940 * 29 20 19 49 49 H 1.08991 * 109.67277 * 189.04916 * 30 29 20 50 50 H 1.09001 * 109.44429 * 68.65126 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0015 6 6 3.6458 -1.1673 0.0011 7 1 4.1164 -0.5425 -0.7580 8 6 4.3528 -2.4707 0.3812 9 6 4.3518 -1.2890 1.3530 10 1 5.2866 -0.7439 1.4835 11 6 3.4869 -1.4002 2.5821 12 8 2.5438 -2.1627 2.5931 13 7 3.7613 -0.6522 3.6691 14 6 2.9202 -0.7598 4.8638 15 1 2.1942 -1.5728 4.8562 16 6 2.5185 0.5400 5.5647 17 6 3.5497 -0.3884 6.2058 18 6 5.0128 0.0656 6.2051 19 6 5.2807 0.8686 7.4838 20 7 4.8220 0.0867 8.6390 21 6 5.6882 -0.2241 9.6529 22 1 6.7540 -0.1933 9.4812 23 6 5.1966 -0.5730 10.9033 24 7 4.0539 -0.0733 11.3241 25 14 6.1568 -1.7517 11.9888 26 1 7.0939 -0.9828 12.8466 27 1 5.2141 -2.5149 12.8457 28 1 6.9255 -2.6944 11.1371 29 6 3.4252 -0.3634 8.6914 30 6 3.1180 -1.1861 7.4403 31 1 -0.3633 -0.5137 0.8900 32 1 -0.3633 1.0277 0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 2.3792 1.5833 -1.0277 35 1 1.6085 2.0283 0.5139 36 1 3.1499 1.1383 0.5138 37 1 5.2882 -2.7029 -0.1279 38 1 3.7282 -3.3283 0.6313 39 1 4.5157 -0.0425 3.6605 40 1 1.5283 0.5820 6.0182 41 1 2.8801 1.4753 5.1375 42 1 5.2004 0.6928 5.3337 43 1 5.6660 -0.8066 6.1778 44 1 4.7376 1.8127 7.4428 45 1 6.3488 1.0654 7.5769 46 1 3.7102 -0.3174 12.1977 47 1 3.2729 -0.9791 9.5779 48 1 2.7637 0.5022 8.7275 49 1 2.0484 -1.3893 7.3883 50 1 3.6692 -2.1256 7.4794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016820567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:13 Heat of formation + Delta-G solvation = 13.525703 kcal Electronic energy + Delta-G solvation = -29756.037305 eV Core-core repulsion = 25786.003184 eV Total energy + Delta-G solvation = -3970.034121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.83102 -39.58220 -38.45056 -36.27883 -35.63887 -35.41610 -33.11520 -31.62669 -30.08080 -28.69987 -28.37276 -26.87297 -25.13415 -24.35077 -23.41482 -22.52490 -21.71823 -20.76908 -20.34165 -19.29293 -18.23691 -18.04070 -16.71910 -16.52456 -16.32967 -16.00888 -15.66308 -14.98149 -14.78014 -14.65571 -14.32437 -14.06697 -13.58409 -13.48166 -13.25258 -13.16261 -13.09992 -12.97375 -12.86017 -12.72325 -12.34954 -12.27113 -12.11591 -11.70204 -11.63371 -11.41893 -11.09971 -11.00104 -10.89997 -10.67852 -10.49478 -10.35393 -10.10113 -9.92320 -9.85688 -9.70690 -9.64421 -9.39036 -8.91876 -8.48362 -8.37714 -6.79448 -5.84931 -3.11386 2.05663 2.62138 2.68054 3.00051 3.37795 3.47009 3.50888 3.58542 4.14670 4.15310 4.36531 4.42207 4.51150 4.57694 4.73397 4.80090 4.95545 4.97969 4.99230 5.10057 5.10943 5.24887 5.28782 5.30472 5.35526 5.39289 5.45637 5.59501 5.60539 5.83805 5.83977 6.02165 6.03214 6.06725 6.19951 6.24924 6.39606 6.55340 6.57579 6.60736 6.66075 6.79428 6.90984 7.08809 7.31567 7.47355 7.58535 7.80177 8.02891 8.20332 8.37322 9.16754 9.85154 10.38407 11.23724 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002412 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.948020 B =11607.277366 C =11909.366375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.080 3.920 4 C 0.542 3.458 5 O -0.511 6.511 6 C -0.161 4.161 7 H 0.134 0.866 8 C -0.112 4.112 9 C -0.171 4.171 10 H 0.130 0.870 11 C 0.533 3.467 12 O -0.521 6.521 13 N -0.691 5.691 14 C 0.071 3.929 15 H 0.131 0.869 16 C -0.182 4.182 17 C -0.096 4.096 18 C -0.096 4.096 19 C 0.151 3.849 20 N -0.589 5.589 21 C -0.257 4.257 22 H 0.068 0.932 23 C 0.003 3.997 24 N -0.890 5.890 25 Si 0.887 3.113 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.169 3.831 30 C -0.104 4.104 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.018 0.982 45 H 0.054 0.946 46 H 0.254 0.746 47 H 0.091 0.909 48 H 0.017 0.983 49 H 0.052 0.948 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 4.217 -24.727 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.358 5.358 3 C -0.063 4.063 4 C 0.329 3.671 5 O -0.385 6.385 6 C -0.182 4.182 7 H 0.152 0.848 8 C -0.150 4.150 9 C -0.193 4.193 10 H 0.148 0.852 11 C 0.319 3.681 12 O -0.396 6.396 13 N -0.341 5.341 14 C -0.034 4.034 15 H 0.148 0.852 16 C -0.221 4.221 17 C -0.098 4.098 18 C -0.136 4.136 19 C 0.024 3.976 20 N -0.312 5.312 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.196 4.196 24 N -0.534 5.534 25 Si 0.716 3.284 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.043 3.957 30 C -0.144 4.144 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.378 3.078 -24.549 24.856 hybrid contribution 0.865 0.114 0.640 1.082 sum -1.513 3.192 -23.910 24.169 Atomic orbital electron populations 1.21587 0.78901 1.02053 1.02447 1.47603 1.07044 1.06185 1.74927 1.21808 0.97548 0.85329 1.01629 1.19443 0.88132 0.83285 0.76221 1.90715 1.69516 1.30926 1.47314 1.22243 0.92731 1.05027 0.98239 0.84839 1.23067 1.01928 0.91972 0.98024 1.22347 1.01038 1.06848 0.89029 0.85208 1.19539 0.84722 0.80481 0.83405 1.90803 1.29352 1.37167 1.82269 1.45294 1.32180 1.43414 1.13164 1.21878 0.98227 0.99729 0.83581 0.85179 1.23519 1.00644 0.94202 1.03696 1.21957 0.94711 1.00534 0.92575 1.21623 0.93059 1.00065 0.98850 1.20803 0.97745 0.92333 0.86711 1.44055 1.08023 1.59848 1.19227 1.19147 0.89290 1.40994 0.89193 0.91404 1.24757 0.97543 1.01217 0.96071 1.70209 1.22518 1.41787 1.18846 0.86528 0.79377 0.82207 0.80242 1.21513 1.21526 1.20543 1.20698 0.84497 0.95764 0.94772 1.21764 0.98847 0.98908 0.94870 0.91982 0.90806 0.92259 0.92595 0.90929 0.91017 0.86786 0.86265 0.76522 0.88430 0.89124 0.93629 0.91653 0.96377 0.92702 0.93646 0.89096 0.96490 0.92934 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.16 59.85 0.61 1.46 16 2 N -0.62 -6.17 3.27 -189.52 -0.62 -6.79 16 3 C 0.08 0.48 10.16 59.84 0.61 1.08 16 4 C 0.54 6.78 5.79 -10.98 -0.06 6.71 16 5 O -0.51 -8.66 15.68 -7.25 -0.11 -8.77 16 6 C -0.16 -1.41 4.38 -91.73 -0.40 -1.81 16 7 H 0.13 0.71 8.02 -51.93 -0.42 0.29 16 8 C -0.11 -1.02 9.56 -26.69 -0.26 -1.28 16 9 C -0.17 -1.53 6.13 -91.77 -0.56 -2.10 16 10 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 11 C 0.53 7.05 7.13 -10.99 -0.08 6.97 16 12 O -0.52 -9.27 14.20 -7.26 -0.10 -9.37 16 13 N -0.69 -8.41 5.34 -53.88 -0.29 -8.70 16 14 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 15 H 0.13 2.15 7.40 -51.93 -0.38 1.77 16 16 C -0.18 -2.57 9.87 -26.79 -0.26 -2.84 16 17 C -0.10 -1.56 1.94 -154.49 -0.30 -1.86 16 18 C -0.10 -1.54 5.37 -26.45 -0.14 -1.68 16 19 C 0.15 2.99 6.52 -3.67 -0.02 2.97 16 20 N -0.59 -14.36 2.97 -172.56 -0.51 -14.87 16 21 C -0.26 -6.96 9.54 -15.06 -0.14 -7.10 16 22 H 0.07 1.80 7.93 -52.49 -0.42 1.39 16 23 C 0.00 0.08 4.63 -17.43 -0.08 0.00 16 24 N -0.89 -25.61 11.48 55.49 0.64 -24.97 16 25 Si 0.89 21.43 29.65 -169.99 -5.04 16.39 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 29 C 0.17 3.93 5.54 -3.92 -0.02 3.91 16 30 C -0.10 -1.99 5.81 -26.71 -0.16 -2.14 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 36 H 0.07 0.39 6.82 -51.93 -0.35 0.03 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 1.48 7.48 -51.93 -0.39 1.09 16 39 H 0.40 3.87 7.12 -40.82 -0.29 3.58 16 40 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.57 6.75 -51.93 -0.35 0.22 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.09 2.40 5.72 -51.93 -0.30 2.10 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 50 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -35.40 399.38 -10.04 -45.44 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.33 Total: 2.70 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.69 Total: 2.91 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.78 Total: -55.33 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.22 Total: -18.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.40 -10.04 -45.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016820567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.967 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds