Wall clock time and date at job start Tue Mar 31 2020 18:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00267 * 2 1 4 4 C 1.34778 * 119.99485 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00542 * 359.97438 * 4 2 1 6 6 C 1.50701 * 119.99625 * 180.02562 * 4 2 1 7 7 H 1.09003 * 115.56038 * 309.46319 * 6 4 2 8 8 C 1.53074 * 117.51450 * 163.76612 * 6 4 2 9 9 C 1.52996 * 117.50181 * 95.15502 * 6 4 2 10 10 H 1.09000 * 117.50226 * 214.99856 * 9 6 4 11 11 C 1.50703 * 117.49778 * 0.02562 * 9 6 4 12 12 O 1.21283 * 120.00110 * 46.20246 * 11 9 6 13 13 N 1.34774 * 120.00054 * 226.20617 * 11 9 6 14 14 C 1.46497 * 120.00317 * 179.97438 * 13 11 9 15 15 H 1.08999 * 115.56533 * 9.29018 * 14 13 11 16 16 C 1.53040 * 117.50079 * 223.58601 * 14 13 11 17 17 C 1.52816 * 117.50536 * 154.99938 * 14 13 11 18 18 C 1.53191 * 117.71234 * 359.86045 * 17 14 13 19 19 C 1.53353 * 108.76551 * 158.87746 * 18 17 14 20 20 N 1.46840 * 108.81390 * 51.30956 * 19 18 17 21 21 C 1.36928 * 120.38290 * 123.10824 * 20 19 18 22 22 H 1.08000 * 120.00149 * 339.87307 * 21 20 19 23 23 C 1.38812 * 120.00400 * 159.59149 * 21 20 19 24 24 N 1.31621 * 119.99897 * 329.87007 * 23 21 20 25 25 Si 1.86799 * 119.99878 * 149.86196 * 23 21 20 26 26 H 1.48501 * 109.47109 * 90.00876 * 25 23 21 27 27 H 1.48506 * 109.47057 * 210.00362 * 25 23 21 28 28 H 1.48492 * 109.47674 * 330.00376 * 25 23 21 29 29 C 1.46847 * 119.23807 * 303.37733 * 20 19 18 30 30 C 1.52862 * 109.07959 * 56.58391 * 29 20 19 31 31 H 1.08998 * 109.47141 * 240.00533 * 1 2 3 32 32 H 1.08998 * 109.46817 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.47270 * 119.99939 * 1 2 3 34 34 H 1.08998 * 109.46957 * 269.99889 * 3 2 1 35 35 H 1.09002 * 109.47056 * 30.00281 * 3 2 1 36 36 H 1.08998 * 109.47398 * 150.00137 * 3 2 1 37 37 H 1.08997 * 117.49872 * 145.03488 * 8 6 4 38 38 H 1.08998 * 117.53135 * 359.97438 * 8 6 4 39 39 H 0.97000 * 119.99840 * 359.97438 * 13 11 9 40 40 H 1.08996 * 117.50243 * 145.04425 * 16 14 13 41 41 H 1.08993 * 117.53296 * 359.97438 * 16 14 13 42 42 H 1.08998 * 109.59126 * 39.09140 * 18 17 14 43 43 H 1.09004 * 109.58731 * 278.66015 * 18 17 14 44 44 H 1.08997 * 109.57950 * 291.50619 * 19 18 17 45 45 H 1.08998 * 109.69081 * 171.16942 * 19 18 17 46 46 H 0.97005 * 119.99967 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.58087 * 176.42244 * 29 20 19 48 48 H 1.09000 * 109.57817 * 296.81940 * 29 20 19 49 49 H 1.08991 * 109.67277 * 189.04916 * 30 29 20 50 50 H 1.09001 * 109.44429 * 68.65126 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0015 6 6 3.6458 -1.1673 0.0011 7 1 4.1164 -0.5425 -0.7580 8 6 4.3528 -2.4707 0.3812 9 6 4.3518 -1.2890 1.3530 10 1 5.2866 -0.7439 1.4835 11 6 3.4869 -1.4002 2.5821 12 8 2.5438 -2.1627 2.5931 13 7 3.7613 -0.6522 3.6691 14 6 2.9202 -0.7598 4.8638 15 1 2.1942 -1.5728 4.8562 16 6 2.5185 0.5400 5.5647 17 6 3.5497 -0.3884 6.2058 18 6 5.0128 0.0656 6.2051 19 6 5.2807 0.8686 7.4838 20 7 4.8220 0.0867 8.6390 21 6 5.6882 -0.2241 9.6529 22 1 6.7540 -0.1933 9.4812 23 6 5.1966 -0.5730 10.9033 24 7 4.0539 -0.0733 11.3241 25 14 6.1568 -1.7517 11.9888 26 1 7.0939 -0.9828 12.8466 27 1 5.2141 -2.5149 12.8457 28 1 6.9255 -2.6944 11.1371 29 6 3.4252 -0.3634 8.6914 30 6 3.1180 -1.1861 7.4403 31 1 -0.3633 -0.5137 0.8900 32 1 -0.3633 1.0277 0.0005 33 1 -0.3634 -0.5138 -0.8900 34 1 2.3792 1.5833 -1.0277 35 1 1.6085 2.0283 0.5139 36 1 3.1499 1.1383 0.5138 37 1 5.2882 -2.7029 -0.1279 38 1 3.7282 -3.3283 0.6313 39 1 4.5157 -0.0425 3.6605 40 1 1.5283 0.5820 6.0182 41 1 2.8801 1.4753 5.1375 42 1 5.2004 0.6928 5.3337 43 1 5.6660 -0.8066 6.1778 44 1 4.7376 1.8127 7.4428 45 1 6.3488 1.0654 7.5769 46 1 3.7102 -0.3174 12.1977 47 1 3.2729 -0.9791 9.5779 48 1 2.7637 0.5022 8.7275 49 1 2.0484 -1.3893 7.3883 50 1 3.6692 -2.1256 7.4794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016820567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:12 Heat of formation + Delta-G solvation = -9.929321 kcal Electronic energy + Delta-G solvation = -29757.054392 eV Core-core repulsion = 25786.003184 eV Total energy + Delta-G solvation = -3971.051207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.73266 -40.70038 -39.64679 -37.36544 -36.76845 -36.47623 -34.49237 -33.35082 -31.70808 -30.03797 -29.33059 -27.53211 -26.30257 -25.93110 -24.12284 -24.07216 -23.05756 -22.16193 -21.34494 -20.13210 -19.77730 -18.87907 -18.34113 -17.50458 -17.36406 -16.85760 -16.81496 -16.48886 -15.84145 -15.71988 -15.52497 -15.41621 -15.19147 -14.95870 -14.69283 -14.21916 -14.08865 -13.92227 -13.80367 -13.54721 -13.48637 -13.37638 -13.14816 -13.00273 -12.92181 -12.77560 -12.59226 -12.51809 -12.29625 -12.05744 -11.71934 -11.68103 -11.61184 -11.39798 -11.29529 -11.10034 -10.84980 -10.67851 -10.39818 -9.68439 -9.66413 -8.75108 -7.91543 -5.19700 1.17391 1.44080 1.49038 1.57914 1.71152 1.92677 2.11178 2.52569 2.79865 2.99849 3.21691 3.45218 3.61507 3.67375 3.72172 3.78011 3.84141 3.86906 3.97952 4.11546 4.23229 4.32156 4.37880 4.45404 4.51094 4.57893 4.69828 4.71883 4.77560 4.82203 4.82539 4.85771 4.88949 4.93846 4.95653 5.02214 5.06616 5.11710 5.16113 5.29509 5.36332 5.49899 5.52960 5.55643 5.65942 5.73757 6.34593 6.36317 6.53965 7.13045 7.20086 7.26098 7.89875 8.38074 9.15179 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002412 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.948020 B =11607.277366 C =11909.366375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.623 5.623 3 C 0.071 3.929 4 C 0.525 3.475 5 O -0.574 6.574 6 C -0.151 4.151 7 H 0.181 0.819 8 C -0.121 4.121 9 C -0.160 4.160 10 H 0.181 0.819 11 C 0.525 3.475 12 O -0.575 6.575 13 N -0.677 5.677 14 C 0.085 3.915 15 H 0.105 0.895 16 C -0.165 4.165 17 C -0.113 4.113 18 C -0.081 4.081 19 C 0.145 3.855 20 N -0.608 5.608 21 C -0.263 4.263 22 H 0.070 0.930 23 C -0.050 4.050 24 N -0.924 5.924 25 Si 0.949 3.051 26 H -0.284 1.284 27 H -0.295 1.295 28 H -0.274 1.274 29 C 0.177 3.823 30 C -0.095 4.095 31 H 0.031 0.969 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.074 0.926 39 H 0.417 0.583 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.249 0.751 47 H 0.053 0.947 48 H 0.000 1.000 49 H 0.061 0.939 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 6.395 -27.516 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C -0.070 4.070 4 C 0.314 3.686 5 O -0.453 6.453 6 C -0.172 4.172 7 H 0.199 0.801 8 C -0.159 4.159 9 C -0.181 4.181 10 H 0.198 0.802 11 C 0.313 3.687 12 O -0.454 6.454 13 N -0.328 5.328 14 C -0.022 4.022 15 H 0.123 0.877 16 C -0.203 4.203 17 C -0.115 4.115 18 C -0.120 4.120 19 C 0.019 3.981 20 N -0.331 5.331 21 C -0.393 4.393 22 H 0.088 0.912 23 C -0.245 4.245 24 N -0.570 5.570 25 Si 0.777 3.223 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.200 1.200 29 C 0.051 3.949 30 C -0.134 4.134 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.172 0.828 38 H 0.093 0.907 39 H 0.255 0.745 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.019 0.981 49 H 0.080 0.920 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.139 5.331 -27.371 27.886 hybrid contribution 0.029 -0.515 1.491 1.578 sum 0.168 4.816 -25.880 26.324 Atomic orbital electron populations 1.21621 0.79276 1.03691 1.00698 1.47836 1.07338 1.07138 1.73340 1.22124 0.97813 0.83457 1.03612 1.20269 0.89995 0.83072 0.75305 1.90684 1.71064 1.33237 1.50320 1.22404 0.90236 1.05440 0.99136 0.80138 1.23133 1.02999 0.90862 0.98872 1.22464 1.01737 1.07285 0.86630 0.80213 1.20373 0.84422 0.79313 0.84614 1.90806 1.31917 1.39385 1.83278 1.45158 1.32187 1.43432 1.11995 1.21505 0.97558 0.99509 0.83641 0.87700 1.23594 0.99803 0.94789 1.02134 1.21804 0.95650 1.01962 0.92052 1.21456 0.92378 0.99811 0.98363 1.21017 0.97806 0.92490 0.86745 1.44326 1.07933 1.60898 1.19963 1.19485 0.89894 1.40096 0.89814 0.91212 1.25448 0.98754 1.02733 0.97597 1.70315 1.24308 1.43278 1.19134 0.85557 0.77968 0.80157 0.78577 1.21055 1.22166 1.19970 1.20455 0.84207 0.94924 0.95306 1.21528 0.99322 0.97903 0.94683 0.95043 0.87335 0.92857 0.90174 0.89833 0.89725 0.82782 0.90719 0.74480 0.88736 0.86512 0.88983 0.92498 0.96158 0.92399 0.94161 0.92840 0.98148 0.91993 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.16 127.77 1.30 2.92 16 2 N -0.62 -11.28 3.27 -871.91 -2.85 -14.13 16 3 C 0.07 0.55 10.16 127.77 1.30 1.85 16 4 C 0.53 12.69 5.79 87.66 0.51 13.19 16 5 O -0.57 -20.48 15.68 9.23 0.14 -20.33 16 6 C -0.15 -2.14 4.38 -11.52 -0.05 -2.19 16 7 H 0.18 0.83 8.02 -2.39 -0.02 0.81 16 8 C -0.12 -1.93 9.56 30.62 0.29 -1.64 16 9 C -0.16 -2.23 6.13 -11.54 -0.07 -2.30 16 10 H 0.18 0.73 8.14 -2.39 -0.02 0.71 16 11 C 0.52 12.85 7.13 87.66 0.62 13.48 16 12 O -0.57 -20.87 14.20 9.21 0.13 -20.74 16 13 N -0.68 -14.29 5.34 -442.77 -2.37 -16.66 16 14 C 0.08 2.32 6.14 44.94 0.28 2.60 16 15 H 0.11 3.51 7.40 -2.39 -0.02 3.49 16 16 C -0.16 -4.23 9.87 30.56 0.30 -3.93 16 17 C -0.11 -3.47 1.94 -52.17 -0.10 -3.57 16 18 C -0.08 -2.34 5.37 30.78 0.17 -2.18 16 19 C 0.14 5.48 6.52 86.43 0.56 6.04 16 20 N -0.61 -29.75 2.97 -699.85 -2.08 -31.83 16 21 C -0.26 -14.33 9.54 84.03 0.80 -13.53 16 22 H 0.07 3.69 7.93 -2.91 -0.02 3.66 16 23 C -0.05 -2.77 4.63 84.86 0.39 -2.38 16 24 N -0.92 -54.89 11.48 21.65 0.25 -54.64 16 25 Si 0.95 44.94 29.65 68.60 2.03 46.97 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 29 C 0.18 8.50 5.54 86.27 0.48 8.98 16 30 C -0.10 -3.67 5.81 30.61 0.18 -3.49 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 1.11 7.79 -2.39 -0.02 1.10 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.49 7.92 -2.39 -0.02 0.47 16 36 H 0.08 0.46 6.82 -2.39 -0.02 0.44 16 37 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.92 7.48 -2.39 -0.02 1.91 16 39 H 0.42 5.85 7.12 -92.71 -0.66 5.19 16 40 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.09 1.82 6.75 -2.39 -0.02 1.80 16 43 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 46 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 47 H 0.05 2.95 5.72 -2.39 -0.01 2.94 16 48 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 49 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 50 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -84.97 399.38 2.49 -82.48 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.28 Total: 15.04 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.96 Total: 13.86 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -7.05 Total: -117.26 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: 0.28 Total: -41.08 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -84.97 2.49 -82.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016820567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.548 kcal (2) G-P(sol) polarization free energy of solvation -84.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds