Wall clock time and date at job start Tue Mar 31 2020 18:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00090 * 2 1 4 4 C 1.34779 * 120.00210 * 180.02562 * 2 1 3 5 5 O 1.21285 * 119.99470 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00328 * 180.02562 * 4 2 1 7 7 H 1.08996 * 115.54659 * 301.07053 * 6 4 2 8 8 C 1.53071 * 117.51005 * 155.35304 * 6 4 2 9 9 C 1.52999 * 117.49744 * 86.74158 * 6 4 2 10 10 H 1.09002 * 117.49527 * 214.99664 * 9 6 4 11 11 C 1.50694 * 117.50029 * 0.02562 * 9 6 4 12 12 O 1.21286 * 120.00325 * 39.53379 * 11 9 6 13 13 N 1.34774 * 119.99748 * 219.53458 * 11 9 6 14 14 C 1.46498 * 119.99897 * 180.02562 * 13 11 9 15 15 C 1.53148 * 109.43868 * 204.99953 * 14 13 11 16 16 C 1.53701 * 108.88200 * 186.04131 * 15 14 13 17 17 H 1.08993 * 112.09945 * 187.61921 * 16 15 14 18 18 C 1.54611 * 107.82797 * 311.59571 * 16 15 14 19 19 C 1.55889 * 103.99574 * 88.88073 * 18 16 15 20 20 C 1.54606 * 104.90278 * 359.97438 * 19 18 16 21 21 H 1.09002 * 112.19201 * 146.81691 * 20 19 18 22 22 C 1.53146 * 109.43746 * 84.77847 * 14 13 11 23 23 N 1.48289 * 104.26207 * 25.15491 * 20 19 18 24 24 C 1.36932 * 128.21380 * 138.38364 * 23 20 19 25 25 H 1.08004 * 120.00498 * 191.97571 * 24 23 20 26 26 C 1.38812 * 120.00093 * 11.96576 * 24 23 20 27 27 N 1.31623 * 119.99556 * 13.90367 * 26 24 23 28 28 Si 1.86796 * 120.00478 * 193.90032 * 26 24 23 29 29 H 1.48496 * 109.47170 * 60.00121 * 28 26 24 30 30 H 1.48498 * 109.47300 * 180.02562 * 28 26 24 31 31 H 1.48507 * 109.46916 * 300.00392 * 28 26 24 32 32 H 1.08994 * 109.47329 * 269.99993 * 1 2 3 33 33 H 1.09002 * 109.47154 * 30.00007 * 1 2 3 34 34 H 1.08998 * 109.47275 * 149.99491 * 1 2 3 35 35 H 1.08993 * 109.47076 * 270.00083 * 3 2 1 36 36 H 1.08996 * 109.47156 * 30.00293 * 3 2 1 37 37 H 1.09004 * 109.47077 * 150.00086 * 3 2 1 38 38 H 1.09002 * 117.49285 * 145.03684 * 8 6 4 39 39 H 1.08999 * 117.51997 * 359.97438 * 8 6 4 40 40 H 0.97002 * 120.00471 * 359.97438 * 13 11 9 41 41 H 1.09002 * 109.40167 * 324.88918 * 14 13 11 42 42 H 1.09010 * 109.56698 * 305.86062 * 15 14 13 43 43 H 1.09003 * 109.57216 * 66.21561 * 15 14 13 44 44 H 1.09007 * 110.37833 * 207.49102 * 18 16 15 45 45 H 1.09001 * 110.37800 * 329.84651 * 18 16 15 46 46 H 1.09000 * 110.30024 * 241.10565 * 19 18 16 47 47 H 1.09005 * 110.41476 * 118.89649 * 19 18 16 48 48 H 1.09003 * 109.56580 * 293.77721 * 22 14 13 49 49 H 1.08996 * 109.57480 * 54.13546 * 22 14 13 50 50 H 0.97003 * 119.99933 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 0.0001 7 1 4.1162 -0.6591 -0.8417 8 6 4.3527 -2.4016 0.5657 9 6 4.3518 -1.0910 1.3553 10 1 5.2867 -0.5328 1.4051 11 6 3.4869 -1.0223 2.5875 12 8 2.4757 -1.6884 2.6566 13 7 3.8371 -0.2205 3.6127 14 6 2.9966 -0.1541 4.8107 15 6 3.2119 1.1911 5.5104 16 6 2.4434 1.1881 6.8415 17 1 2.4505 2.1667 7.3213 18 6 1.0085 0.6867 6.5585 19 6 1.1120 -0.8608 6.7155 20 6 2.5923 -1.1259 7.0742 21 1 2.7075 -1.9794 7.7424 22 6 3.3719 -1.2954 5.7604 23 7 3.0495 0.1396 7.6974 24 6 3.8432 0.3018 8.8014 25 1 3.9401 1.2755 9.2586 26 6 4.5231 -0.7853 9.3332 27 7 4.6318 -1.8977 8.6380 28 14 5.2838 -0.6697 11.0354 29 1 4.2217 -0.3875 12.0340 30 1 5.9485 -1.9550 11.3689 31 1 6.2864 0.4256 11.0561 32 1 -0.3634 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3634 -0.8899 -0.5139 35 1 2.3791 1.5834 -1.0276 36 1 1.6085 2.0284 0.5139 37 1 3.1499 1.1384 0.5138 38 1 5.2881 -2.7053 0.0957 39 1 3.7278 -3.2134 0.9378 40 1 4.6460 0.3120 3.5576 41 1 1.9493 -0.2503 4.5241 42 1 4.2750 1.3365 5.7028 43 1 2.8405 1.9961 4.8762 44 1 0.3114 1.0999 7.2876 45 1 0.7050 0.9560 5.5469 46 1 0.8542 -1.3541 5.7783 47 1 0.4593 -1.2061 7.5174 48 1 3.1136 -2.2506 5.3032 49 1 4.4421 -1.2639 5.9643 50 1 5.1072 -2.6573 9.0094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021377515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:03 Heat of formation + Delta-G solvation = -6.587494 kcal Electronic energy + Delta-G solvation = -31022.912494 eV Core-core repulsion = 27052.006199 eV Total energy + Delta-G solvation = -3970.906295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.65541 -39.61462 -38.47022 -36.06345 -35.45834 -34.36359 -32.60572 -30.26072 -29.80913 -29.15386 -28.50540 -26.68974 -25.16645 -24.04384 -23.34246 -23.20412 -21.34722 -20.17050 -19.42038 -19.12118 -18.49843 -17.79483 -16.84034 -16.36222 -16.19655 -15.84350 -15.58667 -14.83177 -14.65976 -14.33653 -14.18441 -13.99455 -13.30839 -13.03889 -12.96130 -12.83103 -12.82298 -12.74545 -12.69184 -12.19456 -12.08858 -11.98961 -11.92242 -11.50124 -11.38616 -11.04423 -10.84989 -10.79810 -10.71675 -10.65803 -10.60616 -10.13141 -9.84729 -9.78409 -9.65385 -9.52783 -9.37808 -9.32706 -8.74566 -8.71828 -8.36544 -6.86206 -5.76878 -3.09145 2.32483 2.81266 2.93742 3.37715 3.41753 3.44995 3.45199 3.80993 4.34313 4.46751 4.57838 4.62669 4.81489 4.90684 5.01737 5.11760 5.17277 5.25304 5.38235 5.42759 5.44304 5.51970 5.52283 5.57300 5.73825 5.75734 5.79167 5.88312 5.96647 6.00498 6.01876 6.20215 6.28803 6.36891 6.44736 6.51748 6.67006 6.68679 6.75589 6.85625 6.97130 7.04488 7.21093 7.26643 7.55905 7.59107 7.77662 7.86566 8.20964 8.23022 8.54621 9.12798 9.76152 10.54341 11.35368 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003212 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.452030 B = 8716.143539 C = 9280.121977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.621 5.621 3 C 0.082 3.918 4 C 0.551 3.449 5 O -0.519 6.519 6 C -0.161 4.161 7 H 0.133 0.867 8 C -0.113 4.113 9 C -0.173 4.173 10 H 0.127 0.873 11 C 0.530 3.470 12 O -0.525 6.525 13 N -0.718 5.718 14 C 0.149 3.851 15 C -0.134 4.134 16 C 0.151 3.849 17 H 0.068 0.932 18 C -0.131 4.131 19 C -0.144 4.144 20 C 0.182 3.818 21 H 0.110 0.890 22 C -0.120 4.120 23 N -0.584 5.584 24 C -0.226 4.226 25 H 0.075 0.925 26 C -0.004 4.004 27 N -0.908 5.908 28 Si 0.907 3.093 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.286 1.286 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.393 0.607 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 7.627 -18.413 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.356 5.356 3 C -0.062 4.062 4 C 0.338 3.662 5 O -0.393 6.393 6 C -0.182 4.182 7 H 0.151 0.849 8 C -0.151 4.151 9 C -0.195 4.195 10 H 0.145 0.855 11 C 0.314 3.686 12 O -0.401 6.401 13 N -0.367 5.367 14 C 0.046 3.954 15 C -0.174 4.174 16 C 0.043 3.957 17 H 0.087 0.913 18 C -0.170 4.170 19 C -0.183 4.183 20 C 0.074 3.926 21 H 0.128 0.872 22 C -0.160 4.160 23 N -0.304 5.304 24 C -0.354 4.354 25 H 0.093 0.907 26 C -0.201 4.201 27 N -0.554 5.554 28 Si 0.737 3.263 29 H -0.213 1.213 30 H -0.217 1.217 31 H -0.212 1.212 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.226 0.774 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.546 6.454 -18.139 19.421 hybrid contribution 1.093 0.579 0.778 1.462 sum -1.453 7.034 -17.361 18.788 Atomic orbital electron populations 1.21578 0.79105 1.02550 1.02064 1.47539 1.06978 1.06160 1.74881 1.21750 0.97545 0.85470 1.01415 1.19385 0.88058 0.83247 0.75512 1.90685 1.69548 1.31037 1.48055 1.22195 0.92707 1.06197 0.97123 0.84934 1.23036 1.01819 0.91076 0.99177 1.22450 1.01155 1.05336 0.90540 0.85523 1.19483 0.85569 0.80078 0.83425 1.90786 1.25881 1.42581 1.80888 1.46265 1.27891 1.45064 1.17483 1.21310 0.94373 0.96600 0.83113 1.22504 1.01922 0.94768 0.98244 1.21470 0.91207 0.93633 0.89436 0.91343 1.22904 0.97913 0.96794 0.99433 1.23073 1.00291 0.95036 0.99895 1.21497 0.87363 0.91980 0.91741 0.87222 1.22377 1.02622 0.95139 0.95898 1.45215 1.56104 1.00075 1.29049 1.18923 1.19905 0.95524 1.01057 0.90732 1.24767 0.99501 0.96947 0.98905 1.69905 1.45569 1.04073 1.35876 0.86286 0.78746 0.76667 0.84564 1.21251 1.21687 1.21225 0.92642 0.91566 0.90686 0.92731 0.91063 0.91034 0.86984 0.86516 0.77366 0.90122 0.91673 0.93505 0.92697 0.92698 0.92501 0.92929 0.93892 0.90871 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.44 59.84 0.62 1.59 16 2 N -0.62 -7.28 3.27 -189.52 -0.62 -7.90 16 3 C 0.08 0.64 10.27 59.85 0.61 1.25 16 4 C 0.55 7.88 5.35 -10.98 -0.06 7.82 16 5 O -0.52 -9.65 15.84 0.17 0.00 -9.65 16 6 C -0.16 -1.72 4.49 -91.74 -0.41 -2.13 16 7 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.11 -1.27 9.58 -26.69 -0.26 -1.53 16 9 C -0.17 -1.92 5.66 -91.77 -0.52 -2.44 16 10 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 11 C 0.53 8.27 7.21 -10.99 -0.08 8.19 16 12 O -0.53 -10.54 14.38 0.17 0.00 -10.54 16 13 N -0.72 -10.79 5.08 -53.66 -0.27 -11.06 16 14 C 0.15 2.68 2.10 -67.78 -0.14 2.54 16 15 C -0.13 -2.31 5.08 -26.29 -0.13 -2.45 16 16 C 0.15 2.97 4.28 -65.73 -0.28 2.69 16 17 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 18 C -0.13 -2.36 6.09 -24.34 -0.15 -2.51 16 19 C -0.14 -2.89 6.02 -24.34 -0.15 -3.04 16 20 C 0.18 4.25 3.16 -65.74 -0.21 4.04 16 21 H 0.11 2.96 6.30 -51.93 -0.33 2.64 16 22 C -0.12 -2.62 5.16 -26.29 -0.14 -2.76 16 23 N -0.58 -14.05 2.83 -152.76 -0.43 -14.48 16 24 C -0.23 -6.01 10.37 -15.06 -0.16 -6.16 16 25 H 0.07 1.93 7.87 -52.48 -0.41 1.51 16 26 C 0.00 -0.11 5.38 -17.43 -0.09 -0.20 16 27 N -0.91 -25.59 10.82 55.49 0.60 -24.99 16 28 Si 0.91 21.49 29.58 -169.99 -5.03 16.47 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 30 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 31 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.07 0.89 7.42 -51.93 -0.39 0.51 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.07 0.54 6.44 -51.93 -0.33 0.21 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.12 1.70 7.70 -51.93 -0.40 1.30 16 40 H 0.39 4.83 8.60 -40.82 -0.35 4.48 16 41 H 0.08 1.57 4.98 -51.93 -0.26 1.31 16 42 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.89 7.08 -51.93 -0.37 0.52 16 46 H 0.06 1.12 7.04 -51.93 -0.37 0.76 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -34.21 389.30 -9.66 -43.87 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.25 Total: 7.50 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.53 Total: 4.91 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.72 Total: -58.44 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.01 Total: -20.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.21 -9.66 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021377515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.287 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds