Wall clock time and date at job start Tue Mar 31 2020 18:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00090 * 2 1 4 4 C 1.34779 * 120.00210 * 180.02562 * 2 1 3 5 5 O 1.21285 * 119.99470 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00328 * 180.02562 * 4 2 1 7 7 H 1.08996 * 115.54659 * 301.07053 * 6 4 2 8 8 C 1.53071 * 117.51005 * 155.35304 * 6 4 2 9 9 C 1.52999 * 117.49744 * 86.74158 * 6 4 2 10 10 H 1.09002 * 117.49527 * 214.99664 * 9 6 4 11 11 C 1.50694 * 117.50029 * 0.02562 * 9 6 4 12 12 O 1.21286 * 120.00325 * 39.53379 * 11 9 6 13 13 N 1.34774 * 119.99748 * 219.53458 * 11 9 6 14 14 C 1.46498 * 119.99897 * 180.02562 * 13 11 9 15 15 C 1.53148 * 109.43868 * 204.99953 * 14 13 11 16 16 C 1.53701 * 108.88200 * 186.04131 * 15 14 13 17 17 H 1.08993 * 112.09945 * 187.61921 * 16 15 14 18 18 C 1.54611 * 107.82797 * 311.59571 * 16 15 14 19 19 C 1.55889 * 103.99574 * 88.88073 * 18 16 15 20 20 C 1.54606 * 104.90278 * 359.97438 * 19 18 16 21 21 H 1.09002 * 112.19201 * 146.81691 * 20 19 18 22 22 C 1.53146 * 109.43746 * 84.77847 * 14 13 11 23 23 N 1.48289 * 104.26207 * 25.15491 * 20 19 18 24 24 C 1.36932 * 128.21380 * 138.38364 * 23 20 19 25 25 H 1.08004 * 120.00498 * 191.97571 * 24 23 20 26 26 C 1.38812 * 120.00093 * 11.96576 * 24 23 20 27 27 N 1.31623 * 119.99556 * 13.90367 * 26 24 23 28 28 Si 1.86796 * 120.00478 * 193.90032 * 26 24 23 29 29 H 1.48496 * 109.47170 * 60.00121 * 28 26 24 30 30 H 1.48498 * 109.47300 * 180.02562 * 28 26 24 31 31 H 1.48507 * 109.46916 * 300.00392 * 28 26 24 32 32 H 1.08994 * 109.47329 * 269.99993 * 1 2 3 33 33 H 1.09002 * 109.47154 * 30.00007 * 1 2 3 34 34 H 1.08998 * 109.47275 * 149.99491 * 1 2 3 35 35 H 1.08993 * 109.47076 * 270.00083 * 3 2 1 36 36 H 1.08996 * 109.47156 * 30.00293 * 3 2 1 37 37 H 1.09004 * 109.47077 * 150.00086 * 3 2 1 38 38 H 1.09002 * 117.49285 * 145.03684 * 8 6 4 39 39 H 1.08999 * 117.51997 * 359.97438 * 8 6 4 40 40 H 0.97002 * 120.00471 * 359.97438 * 13 11 9 41 41 H 1.09002 * 109.40167 * 324.88918 * 14 13 11 42 42 H 1.09010 * 109.56698 * 305.86062 * 15 14 13 43 43 H 1.09003 * 109.57216 * 66.21561 * 15 14 13 44 44 H 1.09007 * 110.37833 * 207.49102 * 18 16 15 45 45 H 1.09001 * 110.37800 * 329.84651 * 18 16 15 46 46 H 1.09000 * 110.30024 * 241.10565 * 19 18 16 47 47 H 1.09005 * 110.41476 * 118.89649 * 19 18 16 48 48 H 1.09003 * 109.56580 * 293.77721 * 22 14 13 49 49 H 1.08996 * 109.57480 * 54.13546 * 22 14 13 50 50 H 0.97003 * 119.99933 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6459 -1.1672 0.0001 7 1 4.1162 -0.6591 -0.8417 8 6 4.3527 -2.4016 0.5657 9 6 4.3518 -1.0910 1.3553 10 1 5.2867 -0.5328 1.4051 11 6 3.4869 -1.0223 2.5875 12 8 2.4757 -1.6884 2.6566 13 7 3.8371 -0.2205 3.6127 14 6 2.9966 -0.1541 4.8107 15 6 3.2119 1.1911 5.5104 16 6 2.4434 1.1881 6.8415 17 1 2.4505 2.1667 7.3213 18 6 1.0085 0.6867 6.5585 19 6 1.1120 -0.8608 6.7155 20 6 2.5923 -1.1259 7.0742 21 1 2.7075 -1.9794 7.7424 22 6 3.3719 -1.2954 5.7604 23 7 3.0495 0.1396 7.6974 24 6 3.8432 0.3018 8.8014 25 1 3.9401 1.2755 9.2586 26 6 4.5231 -0.7853 9.3332 27 7 4.6318 -1.8977 8.6380 28 14 5.2838 -0.6697 11.0354 29 1 4.2217 -0.3875 12.0340 30 1 5.9485 -1.9550 11.3689 31 1 6.2864 0.4256 11.0561 32 1 -0.3634 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3634 -0.8899 -0.5139 35 1 2.3791 1.5834 -1.0276 36 1 1.6085 2.0284 0.5139 37 1 3.1499 1.1384 0.5138 38 1 5.2881 -2.7053 0.0957 39 1 3.7278 -3.2134 0.9378 40 1 4.6460 0.3120 3.5576 41 1 1.9493 -0.2503 4.5241 42 1 4.2750 1.3365 5.7028 43 1 2.8405 1.9961 4.8762 44 1 0.3114 1.0999 7.2876 45 1 0.7050 0.9560 5.5469 46 1 0.8542 -1.3541 5.7783 47 1 0.4593 -1.2061 7.5174 48 1 3.1136 -2.2506 5.3032 49 1 4.4421 -1.2639 5.9643 50 1 5.1072 -2.6573 9.0094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021377515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:02 Heat of formation + Delta-G solvation = -29.899669 kcal Electronic energy + Delta-G solvation = -31023.923386 eV Core-core repulsion = 27052.006199 eV Total energy + Delta-G solvation = -3971.917186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.80223 -41.02916 -39.78219 -37.05431 -36.46066 -35.83911 -34.49996 -31.96442 -31.33757 -30.96159 -29.29100 -27.52007 -26.76721 -25.46772 -24.95648 -24.07701 -22.88002 -21.41321 -20.97048 -20.44891 -19.93617 -18.90546 -18.45767 -17.64571 -17.32126 -16.86033 -16.81708 -16.48970 -15.95811 -15.64503 -15.49424 -15.34768 -14.68640 -14.56367 -14.52466 -14.00434 -13.94220 -13.76189 -13.65553 -13.45801 -13.41024 -13.17969 -13.15650 -13.02574 -12.86373 -12.83501 -12.57239 -12.43446 -12.30752 -11.98228 -11.66455 -11.60162 -11.44238 -11.32506 -11.12387 -11.02359 -11.00500 -10.80152 -10.57788 -9.87989 -9.63292 -8.80435 -7.81669 -5.14078 1.26325 1.47778 1.51180 1.56653 1.78830 2.00802 2.27760 2.52600 2.88200 3.35934 3.48889 3.56495 3.69511 3.75410 3.87015 3.96263 4.08827 4.23857 4.25682 4.31868 4.33314 4.39365 4.41386 4.45985 4.47278 4.56694 4.69900 4.73219 4.79812 4.81632 4.87085 4.88276 4.93141 4.97272 5.09226 5.10108 5.12314 5.17808 5.25230 5.30128 5.53976 5.55554 5.56457 5.67493 5.74462 5.82318 6.26205 6.38724 6.66164 7.09052 7.23163 7.35694 7.78480 8.58353 9.29438 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003212 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.452030 B = 8716.143539 C = 9280.121977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.622 5.622 3 C 0.073 3.927 4 C 0.533 3.467 5 O -0.580 6.580 6 C -0.147 4.147 7 H 0.182 0.818 8 C -0.124 4.124 9 C -0.165 4.165 10 H 0.175 0.825 11 C 0.522 3.478 12 O -0.576 6.576 13 N -0.708 5.708 14 C 0.164 3.836 15 C -0.121 4.121 16 C 0.142 3.858 17 H 0.082 0.918 18 C -0.118 4.118 19 C -0.137 4.137 20 C 0.175 3.825 21 H 0.063 0.937 22 C -0.103 4.103 23 N -0.603 5.603 24 C -0.230 4.230 25 H 0.082 0.918 26 C -0.059 4.059 27 N -0.937 5.937 28 Si 0.968 3.032 29 H -0.284 1.284 30 H -0.301 1.301 31 H -0.275 1.275 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.153 0.847 39 H 0.071 0.929 40 H 0.411 0.589 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.016 0.984 49 H 0.039 0.961 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 11.447 -20.361 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.355 5.355 3 C -0.068 4.068 4 C 0.322 3.678 5 O -0.460 6.460 6 C -0.168 4.168 7 H 0.199 0.801 8 C -0.161 4.161 9 C -0.186 4.186 10 H 0.193 0.807 11 C 0.310 3.690 12 O -0.455 6.455 13 N -0.358 5.358 14 C 0.059 3.941 15 C -0.160 4.160 16 C 0.035 3.965 17 H 0.100 0.900 18 C -0.157 4.157 19 C -0.176 4.176 20 C 0.068 3.932 21 H 0.081 0.919 22 C -0.143 4.143 23 N -0.325 5.325 24 C -0.359 4.359 25 H 0.100 0.900 26 C -0.253 4.253 27 N -0.585 5.585 28 Si 0.797 3.203 29 H -0.210 1.210 30 H -0.228 1.228 31 H -0.201 1.201 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.171 0.829 39 H 0.089 0.911 40 H 0.247 0.753 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.035 0.965 49 H 0.058 0.942 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.484 10.377 -20.110 22.678 hybrid contribution 0.684 -0.614 1.387 1.664 sum -0.800 9.763 -18.722 21.130 Atomic orbital electron populations 1.21621 0.79268 1.03450 1.01231 1.47771 1.07390 1.07025 1.73285 1.22057 0.97545 0.83634 1.03595 1.20164 0.89810 0.83115 0.74700 1.90655 1.71019 1.33285 1.50995 1.22361 0.90408 1.05874 0.98110 0.80066 1.23110 1.03007 0.90152 0.99855 1.22511 1.01895 1.05963 0.88212 0.80717 1.20314 0.85343 0.78755 0.84604 1.90784 1.28400 1.44360 1.82001 1.46050 1.28163 1.45271 1.16329 1.20905 0.94297 0.95463 0.83387 1.22339 1.01164 0.95112 0.97435 1.21771 0.91829 0.93021 0.89856 0.89980 1.22840 0.97259 0.94236 1.01387 1.22945 0.97725 0.97372 0.99607 1.21321 0.89724 0.90726 0.91471 0.91926 1.22106 1.00063 0.95855 0.96303 1.45373 1.56119 1.01472 1.29505 1.19286 1.19149 0.95629 1.01806 0.90026 1.25487 1.00931 0.96942 1.01979 1.70118 1.46829 1.04503 1.37043 0.85318 0.78011 0.76204 0.80775 1.21024 1.22779 1.20080 0.94350 0.87714 0.92707 0.89859 0.89991 0.90303 0.82914 0.91066 0.75288 0.91036 0.92573 0.89294 0.91442 0.90101 0.92559 0.93281 0.96495 0.94218 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.82 10.44 127.77 1.33 3.16 16 2 N -0.62 -13.46 3.27 -871.90 -2.85 -16.31 16 3 C 0.07 0.85 10.27 127.77 1.31 2.16 16 4 C 0.53 14.88 5.35 87.66 0.47 15.35 16 5 O -0.58 -22.61 15.84 2.10 0.03 -22.58 16 6 C -0.15 -2.69 4.49 -11.52 -0.05 -2.75 16 7 H 0.18 1.55 8.14 -2.39 -0.02 1.53 16 8 C -0.12 -2.57 9.58 30.62 0.29 -2.28 16 9 C -0.16 -3.15 5.66 -11.54 -0.07 -3.22 16 10 H 0.18 1.68 8.14 -2.39 -0.02 1.66 16 11 C 0.52 15.77 7.21 87.66 0.63 16.40 16 12 O -0.58 -23.76 14.38 2.10 0.03 -23.73 16 13 N -0.71 -19.99 5.08 -442.07 -2.24 -22.24 16 14 C 0.16 5.75 2.10 45.09 0.09 5.85 16 15 C -0.12 -3.82 5.08 30.88 0.16 -3.66 16 16 C 0.14 5.28 4.28 45.43 0.19 5.47 16 17 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 18 C -0.12 -3.99 6.09 32.14 0.20 -3.79 16 19 C -0.14 -5.59 6.02 32.14 0.19 -5.39 16 20 C 0.18 8.52 3.16 45.43 0.14 8.66 16 21 H 0.06 3.63 6.30 -2.39 -0.02 3.61 16 22 C -0.10 -4.67 5.16 30.88 0.16 -4.51 16 23 N -0.60 -29.15 2.83 -637.22 -1.80 -30.96 16 24 C -0.23 -12.27 10.37 84.03 0.87 -11.40 16 25 H 0.08 4.15 7.87 -2.91 -0.02 4.12 16 26 C -0.06 -3.29 5.38 84.86 0.46 -2.83 16 27 N -0.94 -55.32 10.82 21.65 0.23 -55.08 16 28 Si 0.97 45.02 29.58 68.60 2.03 47.04 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 31 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.32 8.07 -2.39 -0.02 1.30 16 34 H 0.05 1.36 7.42 -2.39 -0.02 1.34 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 37 H 0.08 0.81 6.44 -2.38 -0.02 0.80 16 38 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.19 7.70 -2.39 -0.02 2.17 16 40 H 0.41 8.79 8.60 -92.71 -0.80 7.99 16 41 H 0.07 2.71 4.98 -2.39 -0.01 2.70 16 42 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.08 2.34 7.08 -2.39 -0.02 2.32 16 46 H 0.06 2.27 7.04 -2.39 -0.02 2.25 16 47 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -82.97 389.30 1.96 -81.01 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.15 Total: 25.64 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.39 Total: 17.21 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.67 Total: -124.59 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: 0.06 Total: -46.30 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -82.97 1.96 -81.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021377515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.106 kcal (2) G-P(sol) polarization free energy of solvation -82.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds