Wall clock time and date at job start Tue Mar 31 2020 18:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00134 * 2 1 4 4 C 1.46900 * 111.00132 * 123.95330 * 2 1 3 5 5 C 1.50703 * 109.47405 * 163.86373 * 4 2 1 6 6 C 1.40362 * 126.64852 * 105.83062 * 5 4 2 7 7 C 1.35129 * 107.11193 * 179.97438 * 6 5 4 8 8 O 1.33931 * 108.77341 * 0.22308 * 7 6 5 9 9 C 1.34921 * 109.37767 * 359.62960 * 8 7 6 10 10 C 1.46661 * 125.98622 * 180.18392 * 9 8 7 11 11 O 1.21691 * 120.00333 * 184.20399 * 10 9 8 12 12 N 1.34779 * 119.99816 * 4.20316 * 10 9 8 13 13 C 1.46501 * 119.99821 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46820 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.50170 * 54.99852 * 14 13 12 16 16 C 1.53040 * 109.49562 * 175.06579 * 14 13 12 17 17 C 1.53042 * 109.53821 * 181.31328 * 16 14 13 18 18 C 1.53181 * 109.31153 * 298.63092 * 17 16 14 19 19 N 1.46925 * 108.77789 * 54.63836 * 18 17 16 20 20 C 1.36937 * 120.63492 * 126.38230 * 19 18 17 21 21 H 1.07997 * 120.00314 * 332.53640 * 20 19 18 22 22 C 1.38815 * 119.99729 * 152.53343 * 20 19 18 23 23 N 1.31629 * 119.99496 * 160.54281 * 22 20 19 24 24 Si 1.86796 * 120.00292 * 340.54430 * 22 20 19 25 25 H 1.48504 * 109.46880 * 93.01886 * 24 22 20 26 26 H 1.48505 * 109.47296 * 213.01695 * 24 22 20 27 27 H 1.48497 * 109.47219 * 333.01942 * 24 22 20 28 28 C 1.46942 * 118.76312 * 306.40942 * 19 18 17 29 29 H 1.09003 * 109.46819 * 296.04983 * 1 2 3 30 30 H 1.09001 * 109.47365 * 56.04621 * 1 2 3 31 31 H 1.08997 * 109.46812 * 176.04787 * 1 2 3 32 32 H 1.09001 * 109.47014 * 189.62933 * 3 2 1 33 33 H 1.09003 * 109.46956 * 309.62218 * 3 2 1 34 34 H 1.09000 * 109.47525 * 69.62426 * 3 2 1 35 35 H 1.08994 * 109.47415 * 43.85839 * 4 2 1 36 36 H 1.09009 * 109.46863 * 283.85785 * 4 2 1 37 37 H 1.07996 * 126.44463 * 359.97438 * 6 5 4 38 38 H 1.08001 * 125.61836 * 179.97438 * 7 6 5 39 39 H 0.97001 * 120.00303 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46728 * 299.99866 * 13 12 10 41 41 H 1.08997 * 109.47210 * 59.99751 * 13 12 10 42 42 H 1.09001 * 109.46033 * 301.33852 * 16 14 13 43 43 H 1.09005 * 109.46107 * 61.30443 * 16 14 13 44 44 H 1.08998 * 109.49455 * 58.58938 * 17 16 14 45 45 H 1.08999 * 109.49648 * 178.68289 * 17 16 14 46 46 H 1.09009 * 109.58552 * 174.41920 * 18 17 16 47 47 H 1.08999 * 109.59105 * 294.70676 * 18 17 16 48 48 H 0.97002 * 119.99235 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.55804 * 293.78247 * 28 19 18 50 50 H 1.08994 * 109.61505 * 173.35389 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4497 -1.0823 0.9004 6 6 4.5512 -0.4817 1.5297 7 6 5.6625 -1.0609 1.0242 8 8 5.2969 -1.9774 0.1185 9 6 3.9509 -2.0092 0.0320 10 6 3.1641 -2.8831 -0.8445 11 8 1.9535 -2.7679 -0.8908 12 7 3.7818 -3.8138 -1.5986 13 6 2.9959 -4.6864 -2.4745 14 6 3.9324 -5.6448 -3.2130 15 1 4.5403 -6.1887 -2.4900 16 6 3.1048 -6.6367 -4.0335 17 6 4.0396 -7.6163 -4.7467 18 6 4.9521 -6.8413 -5.7023 19 7 5.6443 -5.7889 -4.9460 20 6 7.0094 -5.6875 -4.9810 21 1 7.6116 -6.5652 -5.1633 22 6 7.6192 -4.4564 -4.7821 23 7 8.8876 -4.3988 -4.4350 24 14 6.6399 -2.8818 -5.0070 25 1 6.0728 -2.4608 -3.7007 26 1 7.5317 -1.8141 -5.5266 27 1 5.5367 -3.1186 -5.9724 28 6 4.8443 -4.8473 -4.1507 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0716 1.3475 -0.1719 33 1 1.5138 1.9455 -0.7916 34 1 1.7917 1.8390 0.9633 35 1 1.4339 -1.6943 1.2416 36 1 1.8958 -0.1770 2.0494 37 1 4.5171 0.2970 2.2773 38 1 6.6784 -0.8213 1.3016 39 1 4.7467 -3.9059 -1.5614 40 1 2.2881 -5.2598 -1.8758 41 1 2.4517 -4.0797 -3.1983 42 1 2.4376 -7.1882 -3.3711 43 1 2.5155 -6.0939 -4.7726 44 1 4.6468 -8.1418 -4.0096 45 1 3.4487 -8.3368 -5.3122 46 1 5.6851 -7.5200 -6.1385 47 1 4.3538 -6.3915 -6.4946 48 1 9.3138 -3.5385 -4.2964 49 1 4.2373 -4.2323 -4.8151 50 1 5.5058 -4.2108 -3.5630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023560346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:25 Heat of formation + Delta-G solvation = 9.184472 kcal Electronic energy + Delta-G solvation = -30257.652118 eV Core-core repulsion = 26287.429747 eV Total energy + Delta-G solvation = -3970.222371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.73790 -39.38529 -38.03645 -37.47311 -34.82223 -33.37072 -33.02991 -31.28278 -30.63077 -30.01163 -27.63089 -27.47451 -25.70036 -25.27628 -23.18302 -22.41144 -22.11633 -21.24308 -20.76560 -19.78566 -19.28346 -18.05182 -16.84346 -16.44537 -16.19033 -15.76081 -15.52092 -15.27246 -15.24428 -14.75276 -14.60070 -14.15241 -13.99324 -13.83460 -13.30391 -13.27115 -13.26190 -13.00999 -12.80776 -12.57920 -12.39382 -12.32717 -12.05298 -11.86903 -11.71910 -11.59720 -11.54835 -11.44318 -10.78827 -10.58844 -10.51205 -10.11144 -10.06790 -9.90238 -9.80250 -9.67878 -9.44247 -8.95980 -8.62622 -8.57563 -8.36526 -6.97328 -5.95807 -3.32083 1.09542 2.25193 2.73824 3.31350 3.31597 3.40655 3.49409 3.51771 4.01473 4.51479 4.59099 4.66656 4.81848 4.89647 5.07655 5.15445 5.18542 5.24329 5.26012 5.31679 5.33725 5.43838 5.45301 5.49763 5.58549 5.62676 5.75071 5.79312 5.85108 5.86499 5.88983 5.90797 6.05475 6.11550 6.14824 6.23582 6.31391 6.34927 6.52011 6.56990 6.60409 6.69472 6.72216 6.82958 6.96115 6.98093 6.99985 7.66301 7.95603 8.28148 8.32246 8.93503 9.71220 10.09546 11.20090 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.003729 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.103359 B = 7506.385003 C = 8647.499810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.530 5.530 3 C 0.025 3.975 4 C 0.127 3.873 5 C -0.095 4.095 6 C -0.224 4.224 7 C -0.006 4.006 8 O -0.159 6.159 9 C -0.053 4.053 10 C 0.599 3.401 11 O -0.507 6.507 12 N -0.718 5.718 13 C 0.128 3.872 14 C -0.120 4.120 15 H 0.080 0.920 16 C -0.100 4.100 17 C -0.134 4.134 18 C 0.146 3.854 19 N -0.606 5.606 20 C -0.259 4.259 21 H 0.086 0.914 22 C 0.024 3.976 23 N -0.909 5.909 24 Si 0.880 3.120 25 H -0.286 1.286 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.133 3.867 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.022 0.978 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.152 0.848 38 H 0.209 0.791 39 H 0.408 0.592 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.027 0.973 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 6.367 12.235 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.253 5.253 3 C -0.124 4.124 4 C 0.000 4.000 5 C -0.098 4.098 6 C -0.243 4.243 7 C -0.076 4.076 8 O -0.053 6.053 9 C -0.106 4.106 10 C 0.385 3.615 11 O -0.384 6.384 12 N -0.369 5.369 13 C 0.004 3.996 14 C -0.140 4.140 15 H 0.098 0.902 16 C -0.138 4.138 17 C -0.174 4.174 18 C 0.021 3.979 19 N -0.329 5.329 20 C -0.388 4.388 21 H 0.104 0.896 22 C -0.175 4.175 23 N -0.552 5.552 24 Si 0.711 3.289 25 H -0.214 1.214 26 H -0.232 1.232 27 H -0.197 1.197 28 C 0.007 3.993 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.170 0.830 38 H 0.225 0.775 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.859 6.092 11.565 19.051 hybrid contribution -0.025 1.647 0.815 1.838 sum -13.884 7.739 12.380 20.148 Atomic orbital electron populations 1.22326 0.86844 1.02709 0.99704 1.61773 1.07846 1.13019 1.42700 1.22424 1.01240 0.88934 0.99762 1.20423 0.89756 0.98870 0.90952 1.20323 0.96436 0.96036 0.97026 1.21654 0.91509 1.05238 1.05916 1.24340 1.00495 0.91271 0.91462 1.84161 1.22441 1.49291 1.49404 1.22039 0.80272 1.04025 1.04277 1.16487 0.86418 0.79390 0.79250 1.90846 1.11960 1.69626 1.65949 1.46040 1.11821 1.35697 1.43385 1.21484 0.93834 0.91859 0.92397 1.21982 0.96998 0.96766 0.98304 0.90153 1.21340 0.97205 0.96803 0.98480 1.21988 0.98082 0.97601 0.99686 1.20949 0.94217 0.90633 0.92143 1.44344 1.03290 1.33671 1.51633 1.18947 0.79760 0.94601 1.45451 0.89619 1.25265 0.95206 0.97360 0.99630 1.69829 1.11474 1.25049 1.48827 0.87015 0.79408 0.84245 0.78249 1.21415 1.23232 1.19652 1.21393 0.93223 0.92158 0.92543 0.96280 0.91573 0.90793 0.91497 0.91622 0.95961 0.89019 0.94090 0.83033 0.77470 0.75631 0.91421 0.91384 0.92732 0.92294 0.91950 0.92579 0.91956 0.96012 0.92799 0.95557 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.53 60.06 0.57 0.92 16 2 N -0.53 -6.75 4.59 -252.71 -1.16 -7.91 16 3 C 0.02 0.27 9.41 60.07 0.56 0.83 16 4 C 0.13 1.56 4.50 -4.97 -0.02 1.54 16 5 C -0.09 -1.27 4.97 -104.43 -0.52 -1.79 16 6 C -0.22 -2.44 10.83 -39.89 -0.43 -2.87 16 7 C -0.01 -0.06 12.08 29.63 0.36 0.29 16 8 O -0.16 -2.39 10.41 4.98 0.05 -2.33 16 9 C -0.05 -0.82 7.13 -36.80 -0.26 -1.09 16 10 C 0.60 10.13 7.78 -12.86 -0.10 10.03 16 11 O -0.51 -9.10 14.90 5.20 0.08 -9.02 16 12 N -0.72 -11.93 5.33 -61.62 -0.33 -12.26 16 13 C 0.13 2.00 5.07 -4.04 -0.02 1.98 16 14 C -0.12 -2.03 2.37 -90.50 -0.21 -2.25 16 15 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 16 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 17 C -0.13 -2.12 6.08 -26.62 -0.16 -2.28 16 18 C 0.15 2.84 6.52 -3.72 -0.02 2.82 16 19 N -0.61 -14.21 2.77 -172.31 -0.48 -14.69 16 20 C -0.26 -7.18 10.05 -15.06 -0.15 -7.33 16 21 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 22 C 0.02 0.69 5.25 -17.43 -0.09 0.60 16 23 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 24 Si 0.88 22.61 24.32 -169.99 -4.13 18.48 16 25 H -0.29 -7.09 6.63 56.52 0.37 -6.71 16 26 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 27 H -0.27 -6.95 6.52 56.52 0.37 -6.59 16 28 C 0.13 2.83 3.27 -3.70 -0.01 2.82 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 31 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 33 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 34 H 0.02 0.21 8.00 -51.93 -0.42 -0.21 16 35 H 0.09 1.19 7.25 -51.93 -0.38 0.82 16 36 H 0.04 0.42 7.95 -51.92 -0.41 0.01 16 37 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.41 6.98 7.46 -40.82 -0.30 6.67 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.21 7.93 -51.92 -0.41 0.79 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.03 0.58 7.00 -51.93 -0.36 0.22 16 50 H 0.07 1.63 3.64 -51.93 -0.19 1.45 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -32.76 393.35 -8.32 -41.08 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.39 Total: 4.96 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.65 Total: 2.59 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -1.19 Total: -61.68 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.13 Total: -11.35 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.76 -8.32 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023560346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.260 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds