Wall clock time and date at job start Tue Mar 31 2020 18:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00134 * 2 1 4 4 C 1.46900 * 111.00132 * 123.95330 * 2 1 3 5 5 C 1.50703 * 109.47405 * 163.86373 * 4 2 1 6 6 C 1.40362 * 126.64852 * 105.83062 * 5 4 2 7 7 C 1.35129 * 107.11193 * 179.97438 * 6 5 4 8 8 O 1.33931 * 108.77341 * 0.22308 * 7 6 5 9 9 C 1.34921 * 109.37767 * 359.62960 * 8 7 6 10 10 C 1.46661 * 125.98622 * 180.18392 * 9 8 7 11 11 O 1.21691 * 120.00333 * 184.20399 * 10 9 8 12 12 N 1.34779 * 119.99816 * 4.20316 * 10 9 8 13 13 C 1.46501 * 119.99821 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46820 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.50170 * 54.99852 * 14 13 12 16 16 C 1.53040 * 109.49562 * 175.06579 * 14 13 12 17 17 C 1.53042 * 109.53821 * 181.31328 * 16 14 13 18 18 C 1.53181 * 109.31153 * 298.63092 * 17 16 14 19 19 N 1.46925 * 108.77789 * 54.63836 * 18 17 16 20 20 C 1.36937 * 120.63492 * 126.38230 * 19 18 17 21 21 H 1.07997 * 120.00314 * 332.53640 * 20 19 18 22 22 C 1.38815 * 119.99729 * 152.53343 * 20 19 18 23 23 N 1.31629 * 119.99496 * 160.54281 * 22 20 19 24 24 Si 1.86796 * 120.00292 * 340.54430 * 22 20 19 25 25 H 1.48504 * 109.46880 * 93.01886 * 24 22 20 26 26 H 1.48505 * 109.47296 * 213.01695 * 24 22 20 27 27 H 1.48497 * 109.47219 * 333.01942 * 24 22 20 28 28 C 1.46942 * 118.76312 * 306.40942 * 19 18 17 29 29 H 1.09003 * 109.46819 * 296.04983 * 1 2 3 30 30 H 1.09001 * 109.47365 * 56.04621 * 1 2 3 31 31 H 1.08997 * 109.46812 * 176.04787 * 1 2 3 32 32 H 1.09001 * 109.47014 * 189.62933 * 3 2 1 33 33 H 1.09003 * 109.46956 * 309.62218 * 3 2 1 34 34 H 1.09000 * 109.47525 * 69.62426 * 3 2 1 35 35 H 1.08994 * 109.47415 * 43.85839 * 4 2 1 36 36 H 1.09009 * 109.46863 * 283.85785 * 4 2 1 37 37 H 1.07996 * 126.44463 * 359.97438 * 6 5 4 38 38 H 1.08001 * 125.61836 * 179.97438 * 7 6 5 39 39 H 0.97001 * 120.00303 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46728 * 299.99866 * 13 12 10 41 41 H 1.08997 * 109.47210 * 59.99751 * 13 12 10 42 42 H 1.09001 * 109.46033 * 301.33852 * 16 14 13 43 43 H 1.09005 * 109.46107 * 61.30443 * 16 14 13 44 44 H 1.08998 * 109.49455 * 58.58938 * 17 16 14 45 45 H 1.08999 * 109.49648 * 178.68289 * 17 16 14 46 46 H 1.09009 * 109.58552 * 174.41920 * 18 17 16 47 47 H 1.08999 * 109.59105 * 294.70676 * 18 17 16 48 48 H 0.97002 * 119.99235 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.55804 * 293.78247 * 28 19 18 50 50 H 1.08994 * 109.61505 * 173.35389 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.4497 -1.0823 0.9004 6 6 4.5512 -0.4817 1.5297 7 6 5.6625 -1.0609 1.0242 8 8 5.2969 -1.9774 0.1185 9 6 3.9509 -2.0092 0.0320 10 6 3.1641 -2.8831 -0.8445 11 8 1.9535 -2.7679 -0.8908 12 7 3.7818 -3.8138 -1.5986 13 6 2.9959 -4.6864 -2.4745 14 6 3.9324 -5.6448 -3.2130 15 1 4.5403 -6.1887 -2.4900 16 6 3.1048 -6.6367 -4.0335 17 6 4.0396 -7.6163 -4.7467 18 6 4.9521 -6.8413 -5.7023 19 7 5.6443 -5.7889 -4.9460 20 6 7.0094 -5.6875 -4.9810 21 1 7.6116 -6.5652 -5.1633 22 6 7.6192 -4.4564 -4.7821 23 7 8.8876 -4.3988 -4.4350 24 14 6.6399 -2.8818 -5.0070 25 1 6.0728 -2.4608 -3.7007 26 1 7.5317 -1.8141 -5.5266 27 1 5.5367 -3.1186 -5.9724 28 6 4.8443 -4.8473 -4.1507 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0716 1.3475 -0.1719 33 1 1.5138 1.9455 -0.7916 34 1 1.7917 1.8390 0.9633 35 1 1.4339 -1.6943 1.2416 36 1 1.8958 -0.1770 2.0494 37 1 4.5171 0.2970 2.2773 38 1 6.6784 -0.8213 1.3016 39 1 4.7467 -3.9059 -1.5614 40 1 2.2881 -5.2598 -1.8758 41 1 2.4517 -4.0797 -3.1983 42 1 2.4376 -7.1882 -3.3711 43 1 2.5155 -6.0939 -4.7726 44 1 4.6468 -8.1418 -4.0096 45 1 3.4487 -8.3368 -5.3122 46 1 5.6851 -7.5200 -6.1385 47 1 4.3538 -6.3915 -6.4946 48 1 9.3138 -3.5385 -4.2964 49 1 4.2373 -4.2323 -4.8151 50 1 5.5058 -4.2108 -3.5630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023560346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:24 Heat of formation + Delta-G solvation = -14.156810 kcal Electronic energy + Delta-G solvation = -30258.664272 eV Core-core repulsion = 26287.429747 eV Total energy + Delta-G solvation = -3971.234525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.72758 -40.68228 -39.50240 -38.40230 -36.25543 -34.86808 -34.27197 -32.93903 -32.23008 -31.07140 -28.50933 -28.43553 -27.23855 -26.91229 -24.45020 -23.82268 -23.08065 -22.52527 -21.97702 -21.11114 -20.56703 -19.17189 -18.82006 -17.52682 -17.40370 -17.14023 -16.92661 -16.28852 -16.15197 -16.12741 -15.77955 -15.53484 -15.41914 -15.16144 -14.97444 -14.75520 -14.54109 -14.18374 -13.92004 -13.86815 -13.59355 -13.42765 -13.36525 -13.18470 -13.07958 -12.73212 -12.59360 -12.56899 -12.45334 -12.20292 -12.09171 -11.69982 -11.60257 -11.43833 -11.27230 -11.13155 -10.83230 -10.67522 -10.21467 -9.59942 -9.21910 -8.92819 -8.18609 -5.49532 0.03091 1.25257 1.36360 1.36776 1.43329 1.73125 2.12280 2.25381 2.36660 3.02975 3.15915 3.31334 3.65883 3.74525 3.82922 3.89222 3.91938 3.99058 4.25325 4.30981 4.31971 4.44892 4.47086 4.48241 4.48695 4.53213 4.60496 4.68069 4.71758 4.73552 4.76623 4.87160 4.93232 4.96793 4.98043 5.00747 5.03889 5.10257 5.18323 5.23968 5.30864 5.34339 5.41084 5.59614 5.84794 5.86444 6.09337 6.11989 6.16198 6.39759 6.91067 7.02657 7.61560 8.02789 9.01371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.003729 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.103359 B = 7506.385003 C = 8647.499810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.557 5.557 3 C 0.028 3.972 4 C 0.129 3.871 5 C -0.087 4.087 6 C -0.221 4.221 7 C 0.000 4.000 8 O -0.184 6.184 9 C -0.097 4.097 10 C 0.596 3.404 11 O -0.526 6.526 12 N -0.724 5.724 13 C 0.134 3.866 14 C -0.107 4.107 15 H 0.072 0.928 16 C -0.097 4.097 17 C -0.125 4.125 18 C 0.137 3.863 19 N -0.621 5.621 20 C -0.246 4.246 21 H 0.056 0.944 22 C -0.026 4.026 23 N -0.953 5.953 24 Si 0.939 3.061 25 H -0.277 1.277 26 H -0.313 1.313 27 H -0.269 1.269 28 C 0.131 3.869 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.185 0.815 38 H 0.246 0.754 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.032 0.968 48 H 0.261 0.739 49 H 0.023 0.977 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 7.169 13.519 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.282 5.282 3 C -0.120 4.120 4 C 0.002 3.998 5 C -0.091 4.091 6 C -0.240 4.240 7 C -0.069 4.069 8 O -0.079 6.079 9 C -0.150 4.150 10 C 0.383 3.617 11 O -0.404 6.404 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.127 4.127 15 H 0.091 0.909 16 C -0.135 4.135 17 C -0.163 4.163 18 C 0.013 3.987 19 N -0.345 5.345 20 C -0.375 4.375 21 H 0.074 0.926 22 C -0.221 4.221 23 N -0.599 5.599 24 Si 0.769 3.231 25 H -0.204 1.204 26 H -0.242 1.242 27 H -0.194 1.194 28 C 0.006 3.994 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.202 0.798 38 H 0.262 0.738 39 H 0.238 0.762 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.070 0.930 49 H 0.041 0.959 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.112 6.874 12.845 21.722 hybrid contribution 0.690 1.357 0.434 1.583 sum -15.422 8.232 13.278 21.953 Atomic orbital electron populations 1.22283 0.85890 1.02136 1.00862 1.61723 1.08969 1.14138 1.43331 1.22394 1.00398 0.88209 1.00999 1.20420 0.88869 0.98681 0.91859 1.20699 0.97653 0.94883 0.95862 1.22013 0.90283 1.05588 1.06157 1.25246 1.02413 0.89555 0.89723 1.84135 1.22297 1.50714 1.50795 1.21935 0.80793 1.05929 1.06294 1.16708 0.86462 0.79351 0.79195 1.90817 1.12576 1.70289 1.66744 1.46126 1.11595 1.36070 1.43671 1.21454 0.93522 0.91546 0.92364 1.21807 0.96664 0.96805 0.97440 0.90912 1.21376 0.97019 0.96270 0.98856 1.21890 0.97694 0.97793 0.98957 1.21192 0.94607 0.89850 0.93097 1.44508 1.02115 1.34941 1.52964 1.18916 0.81862 0.93454 1.43309 0.92596 1.25758 0.95934 0.99925 1.00490 1.69937 1.13154 1.25504 1.51349 0.86060 0.77857 0.80782 0.78390 1.20388 1.24225 1.19446 1.21365 0.93153 0.92161 0.92725 0.94429 0.91094 0.92159 0.92697 0.91124 0.94080 0.90423 0.91777 0.79799 0.73800 0.76189 0.89508 0.91804 0.89467 0.91443 0.92847 0.89084 0.92758 0.94984 0.92960 0.95929 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.53 127.69 1.22 1.94 16 2 N -0.56 -13.46 4.59 -953.45 -4.37 -17.83 16 3 C 0.03 0.55 9.41 127.69 1.20 1.75 16 4 C 0.13 2.97 4.50 85.56 0.38 3.36 16 5 C -0.09 -2.23 4.97 -19.74 -0.10 -2.33 16 6 C -0.22 -4.27 10.83 22.07 0.24 -4.03 16 7 C 0.00 -0.01 12.08 67.10 0.81 0.80 16 8 O -0.18 -5.46 10.41 -5.11 -0.05 -5.52 16 9 C -0.10 -3.02 7.13 24.07 0.17 -2.84 16 10 C 0.60 20.23 7.78 86.44 0.67 20.90 16 11 O -0.53 -18.88 14.90 -4.32 -0.06 -18.94 16 12 N -0.72 -24.05 5.33 -467.09 -2.49 -26.53 16 13 C 0.13 4.04 5.07 86.38 0.44 4.48 16 14 C -0.11 -3.46 2.37 -10.71 -0.03 -3.49 16 15 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.10 -2.58 5.17 30.62 0.16 -2.42 16 17 C -0.12 -3.58 6.08 30.67 0.19 -3.40 16 18 C 0.14 5.15 6.52 86.36 0.56 5.72 16 19 N -0.62 -29.10 2.77 -699.08 -1.94 -31.04 16 20 C -0.25 -13.94 10.05 84.03 0.84 -13.10 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 22 C -0.03 -1.53 5.25 84.86 0.45 -1.08 16 23 N -0.95 -59.75 13.97 21.65 0.30 -59.44 16 24 Si 0.94 48.03 24.32 68.60 1.67 49.70 16 25 H -0.28 -13.57 6.63 99.48 0.66 -12.91 16 26 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 27 H -0.27 -13.51 6.52 99.48 0.65 -12.86 16 28 C 0.13 5.53 3.27 86.36 0.28 5.82 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 31 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 32 H 0.05 1.19 7.67 -2.39 -0.02 1.17 16 33 H 0.07 1.28 8.02 -2.39 -0.02 1.26 16 34 H 0.04 0.64 8.00 -2.39 -0.02 0.62 16 35 H 0.08 1.99 7.25 -2.39 -0.02 1.97 16 36 H 0.06 1.15 7.95 -2.38 -0.02 1.13 16 37 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.25 2.75 8.06 -2.91 -0.02 2.72 16 39 H 0.40 14.07 7.46 -92.71 -0.69 13.38 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 2.09 7.93 -2.38 -0.02 2.07 16 47 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 49 H 0.02 0.98 7.00 -2.39 -0.02 0.96 16 50 H 0.05 2.18 3.64 -2.39 -0.01 2.18 16 Total: -1.00 -73.44 393.35 0.67 -72.77 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.13 Total: 24.78 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 7.49 Total: 12.06 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -8.50 Total: -134.85 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.12 Total: -24.46 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 1.67 Total: 49.70 kcal Total: -73.44 0.67 -72.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023560346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.609 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds