Wall clock time and date at job start Tue Mar 31 2020 18:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99856 * 2 1 4 4 C 1.46904 * 110.99660 * 123.95116 * 2 1 3 5 5 C 1.50693 * 109.47146 * 66.04873 * 4 2 1 6 6 C 1.40371 * 126.64623 * 260.12393 * 5 4 2 7 7 C 1.35131 * 107.11553 * 180.30003 * 6 5 4 8 8 O 1.33932 * 108.76756 * 359.74778 * 7 6 5 9 9 C 1.34919 * 109.38562 * 359.97438 * 8 7 6 10 10 C 1.46651 * 125.98993 * 180.02562 * 9 8 7 11 11 O 1.21694 * 120.00358 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99914 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00110 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47125 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.49574 * 305.06055 * 14 13 12 16 16 C 1.53032 * 109.49728 * 184.99820 * 14 13 12 17 17 C 1.53043 * 109.53877 * 178.65027 * 16 14 13 18 18 C 1.53186 * 109.31437 * 61.36566 * 17 16 14 19 19 N 1.46927 * 108.77479 * 305.36434 * 18 17 16 20 20 C 1.36936 * 120.63328 * 233.58439 * 19 18 17 21 21 H 1.08004 * 119.99687 * 151.83020 * 20 19 18 22 22 C 1.38804 * 119.99782 * 331.83092 * 20 19 18 23 23 N 1.31622 * 120.00247 * 343.08514 * 22 20 19 24 24 Si 1.86810 * 119.99877 * 163.08468 * 22 20 19 25 25 H 1.48499 * 109.47137 * 59.99982 * 24 22 20 26 26 H 1.48496 * 109.47053 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46625 * 300.00079 * 24 22 20 28 28 C 1.46933 * 118.73465 * 53.86032 * 19 18 17 29 29 H 1.09002 * 109.46642 * 296.04900 * 1 2 3 30 30 H 1.09001 * 109.46952 * 56.04872 * 1 2 3 31 31 H 1.09004 * 109.46985 * 176.05279 * 1 2 3 32 32 H 1.09000 * 109.47073 * 183.95920 * 3 2 1 33 33 H 1.09003 * 109.46807 * 303.95184 * 3 2 1 34 34 H 1.09001 * 109.47693 * 63.95408 * 3 2 1 35 35 H 1.08994 * 109.47165 * 306.04055 * 4 2 1 36 36 H 1.09006 * 109.46450 * 186.04461 * 4 2 1 37 37 H 1.08000 * 126.43866 * 0.05440 * 6 5 4 38 38 H 1.07999 * 125.61568 * 179.71017 * 7 6 5 39 39 H 0.96996 * 120.00070 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.47208 * 59.99760 * 13 12 10 41 41 H 1.09005 * 109.46873 * 299.99900 * 13 12 10 42 42 H 1.09003 * 109.46153 * 58.62865 * 16 14 13 43 43 H 1.08997 * 109.44923 * 298.66376 * 16 14 13 44 44 H 1.08996 * 109.49433 * 301.41091 * 17 16 14 45 45 H 1.09007 * 109.52229 * 181.32916 * 17 16 14 46 46 H 1.09001 * 109.59236 * 185.57892 * 18 17 16 47 47 H 1.09008 * 109.70642 * 65.21545 * 18 17 16 48 48 H 0.97001 * 120.00021 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.58974 * 65.93163 * 28 19 18 50 50 H 1.09003 * 109.58500 * 186.35202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6369 -2.2203 0.9730 6 6 0.5806 -2.8991 1.6005 7 6 0.6255 -4.1819 1.1780 8 8 1.6479 -4.3187 0.3238 9 6 2.2749 -3.1325 0.1821 10 6 3.4413 -2.8703 -0.6672 11 8 3.9222 -1.7533 -0.7127 12 7 3.9808 -3.8665 -1.3974 13 6 5.1464 -3.6047 -2.2455 14 6 5.5559 -4.8933 -2.9615 15 1 5.7205 -5.6813 -2.2266 16 6 6.8454 -4.6522 -3.7494 17 6 7.2742 -5.9495 -4.4388 18 6 6.1824 -6.3864 -5.4205 19 7 4.9066 -6.4803 -4.6977 20 6 4.1622 -7.6287 -4.7425 21 1 3.5148 -7.8851 -3.9169 22 6 4.2397 -8.4633 -5.8490 23 7 4.7477 -8.0148 -6.9774 24 14 3.6230 -10.2231 -5.7366 25 1 2.1791 -10.2204 -5.3896 26 1 3.8172 -10.9001 -7.0439 27 1 4.3830 -10.9477 -4.6866 28 6 4.4418 -5.3163 -3.9310 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0707 32 1 3.0828 1.3432 -0.0710 33 1 1.5898 1.9162 -0.8525 34 1 1.7044 1.8724 0.9233 35 1 1.5612 -0.3871 2.0628 36 1 3.0798 -0.6611 1.1756 37 1 -0.1314 -2.4766 2.2939 38 1 -0.0512 -4.9676 1.4800 39 1 3.5978 -4.7569 -1.3609 40 1 5.9732 -3.2530 -1.6283 41 1 4.8948 -2.8434 -2.9839 42 1 7.6315 -4.3259 -3.0684 43 1 6.6730 -3.8816 -4.5007 44 1 7.4227 -6.7275 -3.6900 45 1 8.2054 -5.7836 -4.9807 46 1 6.4367 -7.3595 -5.8407 47 1 6.0947 -5.6536 -6.2227 48 1 4.8014 -8.5979 -7.7507 49 1 4.2159 -4.4962 -4.6125 50 1 3.5474 -5.5830 -3.3680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023560347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:27 Heat of formation + Delta-G solvation = -18.877249 kcal Electronic energy + Delta-G solvation = -29549.901644 eV Core-core repulsion = 25578.462425 eV Total energy + Delta-G solvation = -3971.439218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.67869 -40.59054 -39.28579 -38.39676 -36.26916 -34.72637 -34.17336 -32.31857 -32.15839 -30.95778 -28.45623 -28.40167 -27.25459 -26.70288 -24.14637 -23.73283 -23.06563 -22.58228 -21.89812 -21.04640 -20.41132 -19.10029 -18.59225 -17.46307 -17.13795 -16.93480 -16.76569 -16.31972 -16.14359 -16.10254 -15.73821 -15.48976 -15.26264 -15.07355 -14.96034 -14.50770 -14.23723 -13.95508 -13.84879 -13.72825 -13.54973 -13.37728 -13.11438 -13.01688 -12.84733 -12.68570 -12.59097 -12.47701 -12.44904 -12.30292 -11.97853 -11.82323 -11.57951 -11.39842 -11.12624 -11.04399 -10.79140 -10.52107 -10.15887 -9.54916 -9.21607 -8.66754 -7.86191 -5.32597 0.07693 1.41299 1.47186 1.49718 1.56383 1.76039 2.16416 2.30833 2.51689 3.19329 3.28196 3.59427 3.69433 3.81167 3.92454 3.99202 4.01344 4.08660 4.27792 4.35889 4.42250 4.49530 4.52534 4.55640 4.57487 4.61241 4.70891 4.75919 4.77018 4.87953 4.89553 4.97612 5.00421 5.02176 5.03729 5.06023 5.11656 5.22189 5.33234 5.36845 5.41385 5.47028 5.57354 5.67218 5.79483 5.89062 6.09584 6.16278 6.39593 6.50040 7.09847 7.15668 7.86809 8.39101 9.19749 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.002740 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.390201 B =10215.605028 C =11329.841474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.558 5.558 3 C 0.032 3.968 4 C 0.125 3.875 5 C -0.090 4.090 6 C -0.226 4.226 7 C 0.007 3.993 8 O -0.175 6.175 9 C -0.091 4.091 10 C 0.597 3.403 11 O -0.537 6.537 12 N -0.714 5.714 13 C 0.140 3.860 14 C -0.100 4.100 15 H 0.075 0.925 16 C -0.096 4.096 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.264 4.264 21 H 0.068 0.932 22 C -0.051 4.051 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.275 1.275 26 H -0.296 1.296 27 H -0.277 1.277 28 C 0.153 3.847 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.180 0.820 38 H 0.250 0.750 39 H 0.409 0.591 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.051 0.949 47 H -0.007 1.007 48 H 0.249 0.751 49 H 0.006 0.994 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 13.323 20.043 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.115 4.115 4 C -0.002 4.002 5 C -0.094 4.094 6 C -0.245 4.245 7 C -0.062 4.062 8 O -0.071 6.071 9 C -0.144 4.144 10 C 0.384 3.616 11 O -0.416 6.416 12 N -0.365 5.365 13 C 0.016 3.984 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.134 4.134 17 C -0.169 4.169 18 C 0.047 3.953 19 N -0.332 5.332 20 C -0.394 4.394 21 H 0.086 0.914 22 C -0.247 4.247 23 N -0.582 5.582 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.203 1.203 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.198 0.802 38 H 0.266 0.734 39 H 0.244 0.756 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.011 0.989 48 H 0.059 0.941 49 H 0.024 0.976 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.976 13.552 19.237 24.279 hybrid contribution -0.879 -0.972 0.111 1.315 sum -6.855 12.580 19.349 24.076 Atomic orbital electron populations 1.22401 0.86597 1.02096 1.01007 1.61803 1.08611 1.14627 1.43179 1.22309 1.00566 0.87637 1.01013 1.20445 1.00456 0.87354 0.91926 1.20638 0.95792 0.96393 0.96568 1.22004 1.01726 0.94146 1.06672 1.25244 0.89935 1.00023 0.91022 1.84104 1.37462 1.32693 1.52811 1.21784 1.00499 0.85063 1.07049 1.16718 0.81279 0.84544 0.79072 1.90828 1.62042 1.22582 1.66136 1.45972 1.32415 1.12977 1.45149 1.21333 0.87252 0.97021 0.92766 1.21792 0.96883 0.96061 0.97319 0.90632 1.21332 0.96111 0.97092 0.98859 1.21994 0.98297 0.97503 0.99057 1.20644 0.84520 0.98683 0.91470 1.44315 1.20178 1.11131 1.57593 1.19496 1.21860 0.98436 0.99620 0.91429 1.25823 1.01346 1.03184 0.94315 1.70193 1.51135 1.35822 1.01058 0.85346 0.78481 0.80284 0.76373 1.20033 1.22178 1.20285 1.21088 0.95043 0.88671 0.92456 0.94330 0.91258 0.92050 0.92165 0.90900 0.94447 0.92298 0.90490 0.80250 0.73374 0.75556 0.90309 0.92176 0.89922 0.92541 0.92861 0.91099 0.93027 0.98915 0.94150 0.97640 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.37 127.69 1.20 1.68 16 2 N -0.56 -12.59 5.01 -953.45 -4.78 -17.36 16 3 C 0.03 0.61 9.57 127.69 1.22 1.83 16 4 C 0.13 2.73 4.60 85.55 0.39 3.12 16 5 C -0.09 -2.03 4.76 -19.74 -0.09 -2.13 16 6 C -0.23 -3.55 10.22 22.07 0.23 -3.33 16 7 C 0.01 0.10 12.08 67.10 0.81 0.91 16 8 O -0.18 -4.04 10.40 -5.10 -0.05 -4.09 16 9 C -0.09 -2.42 7.13 24.07 0.17 -2.25 16 10 C 0.60 18.13 7.79 86.44 0.67 18.80 16 11 O -0.54 -18.47 14.99 -4.33 -0.06 -18.54 16 12 N -0.71 -20.42 5.33 -467.09 -2.49 -22.91 16 13 C 0.14 4.01 5.07 86.38 0.44 4.45 16 14 C -0.10 -3.22 2.38 -10.57 -0.03 -3.24 16 15 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.10 -2.98 5.16 30.62 0.16 -2.82 16 17 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 18 C 0.17 8.39 5.30 86.36 0.46 8.85 16 19 N -0.61 -30.67 2.99 -698.24 -2.09 -32.76 16 20 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 21 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 22 C -0.05 -2.88 4.92 84.86 0.42 -2.47 16 23 N -0.94 -56.00 11.20 21.65 0.24 -55.76 16 24 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.15 6.32 5.63 86.51 0.49 6.81 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 31 H 0.06 1.16 6.80 -2.39 -0.02 1.15 16 32 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.08 1.96 6.95 -2.38 -0.02 1.94 16 37 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.25 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.41 11.21 7.48 -92.71 -0.69 10.52 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 47 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 48 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.05 2.06 7.16 -2.39 -0.02 2.04 16 Total: -1.00 -70.93 399.25 0.56 -70.38 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.23 Total: 22.24 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.52 Total: 11.93 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -9.11 Total: -128.79 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.12 Total: -22.63 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.93 0.56 -70.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023560347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.499 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds