Wall clock time and date at job start Tue Mar 31 2020 18:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46909 * 110.99632 * 2 1 4 4 C 1.46899 * 111.00312 * 123.95404 * 2 1 3 5 5 C 1.50697 * 109.46898 * 172.15219 * 4 2 1 6 6 C 1.40366 * 126.65084 * 105.02405 * 5 4 2 7 7 C 1.35129 * 107.11595 * 180.29477 * 6 5 4 8 8 O 1.33925 * 108.76657 * 359.74219 * 7 6 5 9 9 C 1.34918 * 109.38980 * 0.02562 * 8 7 6 10 10 C 1.46650 * 125.99013 * 180.02562 * 9 8 7 11 11 O 1.21697 * 120.00049 * 175.08128 * 10 9 8 12 12 N 1.34780 * 120.00375 * 355.08386 * 10 9 8 13 13 C 1.46491 * 120.00016 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46948 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.69494 * 299.08981 * 14 13 12 16 16 C 1.52755 * 109.50948 * 178.97491 * 14 13 12 17 17 C 1.53046 * 109.38653 * 185.70308 * 16 14 13 18 18 C 1.53044 * 109.53459 * 61.23713 * 17 16 14 19 19 C 1.53196 * 109.31200 * 298.64065 * 18 17 16 20 20 N 1.46918 * 108.77763 * 54.63708 * 19 18 17 21 21 C 1.36930 * 120.63439 * 126.36949 * 20 19 18 22 22 H 1.08005 * 120.00456 * 212.67945 * 21 20 19 23 23 C 1.38810 * 120.00062 * 32.95355 * 21 20 19 24 24 N 1.31624 * 119.99778 * 10.24887 * 23 21 20 25 25 Si 1.86796 * 120.00432 * 190.24776 * 23 21 20 26 26 H 1.48501 * 109.47103 * 89.99872 * 25 23 21 27 27 H 1.48499 * 109.47476 * 210.00011 * 25 23 21 28 28 H 1.48506 * 109.47020 * 330.00532 * 25 23 21 29 29 H 1.09001 * 109.46987 * 296.04428 * 1 2 3 30 30 H 1.08996 * 109.47160 * 56.04369 * 1 2 3 31 31 H 1.08993 * 109.46939 * 176.04750 * 1 2 3 32 32 H 1.09002 * 109.46912 * 189.24984 * 3 2 1 33 33 H 1.08998 * 109.47052 * 309.24312 * 3 2 1 34 34 H 1.08997 * 109.47184 * 69.24721 * 3 2 1 35 35 H 1.08992 * 109.46939 * 52.14950 * 4 2 1 36 36 H 1.09001 * 109.46693 * 292.15148 * 4 2 1 37 37 H 1.08002 * 126.43724 * 0.03604 * 6 5 4 38 38 H 1.08003 * 125.61470 * 179.77758 * 7 6 5 39 39 H 0.97001 * 119.99233 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.47356 * 60.00464 * 13 12 10 41 41 H 1.09006 * 109.47467 * 299.99842 * 13 12 10 42 42 H 1.09008 * 109.56862 * 65.66756 * 16 14 13 43 43 H 1.09003 * 109.38894 * 305.63074 * 16 14 13 44 44 H 1.09004 * 109.45783 * 301.22374 * 17 16 14 45 45 H 1.08995 * 109.45260 * 181.25089 * 17 16 14 46 46 H 1.08998 * 109.49488 * 178.68775 * 18 17 16 47 47 H 1.09004 * 109.52161 * 58.60390 * 18 17 16 48 48 H 1.08997 * 109.58634 * 294.84320 * 19 18 17 49 49 H 1.09004 * 109.70208 * 174.49450 * 19 18 17 50 50 H 0.97006 * 119.99904 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7660 1.1376 5 6 3.4896 -0.9070 0.9997 6 6 4.4676 -0.2138 1.7299 7 6 5.6710 -0.6378 1.2851 8 8 5.4781 -1.5549 0.3284 9 6 4.1542 -1.7356 0.1416 10 6 3.5371 -2.6570 -0.8180 11 8 2.3285 -2.7992 -0.8343 12 7 4.3083 -3.3463 -1.6821 13 6 3.6919 -4.2670 -2.6403 14 6 4.7810 -4.9166 -3.4965 15 1 5.3203 -4.1479 -4.0501 16 6 4.1413 -5.8959 -4.4789 17 6 5.2396 -6.6476 -5.2346 18 6 6.0911 -7.4429 -4.2423 19 6 6.7564 -6.4765 -3.2572 20 7 5.7163 -5.6486 -2.6317 21 6 5.6171 -5.5651 -1.2685 22 1 4.6500 -5.4405 -0.8040 23 6 6.7599 -5.6350 -0.4838 24 7 7.9487 -5.5780 -1.0460 25 14 6.6110 -5.8097 1.3700 26 1 6.5762 -7.2499 1.7302 27 1 7.7777 -5.1640 2.0235 28 1 5.3604 -5.1542 1.8301 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0726 1.3473 -0.1652 33 1 1.5187 1.9437 -0.7959 34 1 1.7857 1.8412 0.9610 35 1 1.5371 -1.7547 1.1531 36 1 1.7640 -0.2434 2.0657 37 1 4.2913 0.5233 2.4993 38 1 6.6305 -0.2941 1.6426 39 1 5.2716 -3.2332 -1.6688 40 1 3.0044 -3.7166 -3.2825 41 1 3.1448 -5.0404 -2.1009 42 1 3.5209 -5.3484 -5.1885 43 1 3.5246 -6.6079 -3.9302 44 1 5.8705 -5.9333 -5.7635 45 1 4.7844 -7.3308 -5.9516 46 1 6.8586 -7.9963 -4.7835 47 1 5.4569 -8.1405 -3.6953 48 1 7.4601 -5.8378 -3.7909 49 1 7.2853 -7.0409 -2.4892 50 1 8.7474 -5.6265 -0.4976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024623751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:15 Heat of formation + Delta-G solvation = 9.787162 kcal Electronic energy + Delta-G solvation = -30909.510172 eV Core-core repulsion = 26939.313935 eV Total energy + Delta-G solvation = -3970.196236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42006 -38.95377 -37.67798 -37.24933 -34.17349 -33.07876 -32.94504 -30.94142 -29.93736 -29.71315 -27.49113 -27.23811 -25.88636 -24.73079 -22.70923 -22.11024 -21.87622 -21.01485 -20.37495 -19.37486 -19.00447 -17.72287 -16.42817 -16.15893 -15.75777 -15.48991 -15.22471 -15.06108 -15.01422 -14.41606 -14.16429 -13.99636 -13.60724 -13.48588 -13.32217 -13.00882 -12.80429 -12.70923 -12.42024 -12.38500 -12.07401 -11.95296 -11.72814 -11.66846 -11.57342 -11.37639 -11.17023 -10.89877 -10.77969 -10.53104 -10.25407 -10.10564 -9.96374 -9.67866 -9.57230 -9.44954 -9.30083 -8.57912 -8.41972 -8.19692 -8.06465 -6.60165 -5.81401 -3.29890 1.45999 2.52516 3.10673 3.35149 3.42024 3.45807 3.76294 3.93284 4.21027 4.45946 4.85741 4.94325 5.18992 5.24989 5.28924 5.34628 5.36117 5.43434 5.50549 5.54711 5.62457 5.66910 5.71698 5.74800 5.83003 5.93133 5.96702 5.99608 6.07224 6.15755 6.17999 6.20377 6.36853 6.38829 6.44165 6.53117 6.62338 6.73886 6.76149 6.88674 7.01041 7.06900 7.13315 7.17775 7.26261 7.41453 7.69387 7.81568 8.31272 8.44825 8.85185 9.19856 9.80076 10.38858 11.25437 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.004354 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.234438 B = 6429.971286 C = 7949.526353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.530 5.530 3 C 0.026 3.974 4 C 0.129 3.871 5 C -0.111 4.111 6 C -0.224 4.224 7 C -0.016 4.016 8 O -0.151 6.151 9 C -0.034 4.034 10 C 0.592 3.408 11 O -0.527 6.527 12 N -0.683 5.683 13 C 0.136 3.864 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.250 4.250 22 H 0.069 0.931 23 C 0.013 3.987 24 N -0.899 5.899 25 Si 0.891 3.109 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.148 0.852 38 H 0.204 0.796 39 H 0.419 0.581 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.018 0.982 49 H 0.085 0.915 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 9.978 0.454 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.253 5.253 3 C -0.122 4.122 4 C 0.002 3.998 5 C -0.114 4.114 6 C -0.244 4.244 7 C -0.086 4.086 8 O -0.045 6.045 9 C -0.087 4.087 10 C 0.377 3.623 11 O -0.407 6.407 12 N -0.333 5.333 13 C 0.012 3.988 14 C 0.053 3.947 15 H 0.049 0.951 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.048 3.952 20 N -0.312 5.312 21 C -0.380 4.380 22 H 0.086 0.914 23 C -0.187 4.187 24 N -0.543 5.543 25 Si 0.721 3.279 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.166 0.834 38 H 0.221 0.779 39 H 0.257 0.743 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.036 0.964 49 H 0.103 0.897 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.616 9.469 -0.106 12.152 hybrid contribution 0.386 0.466 2.029 2.117 sum -7.230 9.934 1.924 12.437 Atomic orbital electron populations 1.22322 0.87164 1.02598 0.99648 1.61848 1.07551 1.12952 1.42975 1.22390 1.01270 0.89045 0.99530 1.20428 0.89114 0.99627 0.90657 1.20230 0.96247 0.97644 0.97281 1.21591 0.91959 1.05630 1.05181 1.24237 1.00270 0.92448 0.91642 1.84208 1.25545 1.48225 1.46483 1.22217 0.80236 1.03288 1.03000 1.16481 0.86108 0.79587 0.80153 1.90796 1.12731 1.66130 1.71000 1.45975 1.11786 1.41126 1.34427 1.21319 0.95214 0.91764 0.90456 1.20653 0.90493 0.92404 0.91159 0.95073 1.21866 0.97691 0.99039 0.98079 1.21360 0.97332 0.98471 0.97315 1.22204 0.98823 0.99191 0.98157 1.20762 0.89430 0.91091 0.93879 1.44045 1.34365 1.51159 1.01676 1.19169 0.92171 1.45371 0.81304 0.91374 1.25091 0.95576 1.00519 0.97473 1.69981 0.96717 1.53484 1.34104 0.86446 0.77276 0.77883 0.86272 1.21457 1.21659 1.20316 0.96317 0.91642 0.90919 0.91423 0.91863 0.96146 0.88620 0.94586 0.83411 0.77913 0.74287 0.92359 0.91478 0.92983 0.92101 0.92889 0.93753 0.93597 0.92874 0.96418 0.89678 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.57 60.07 0.58 0.94 16 2 N -0.53 -7.52 4.97 -252.72 -1.25 -8.78 16 3 C 0.03 0.31 9.31 60.07 0.56 0.87 16 4 C 0.13 1.91 4.54 -4.98 -0.02 1.88 16 5 C -0.11 -1.79 4.58 -104.43 -0.48 -2.26 16 6 C -0.22 -3.01 10.67 -39.89 -0.43 -3.44 16 7 C -0.02 -0.22 12.08 29.63 0.36 0.14 16 8 O -0.15 -2.74 10.41 5.00 0.05 -2.68 16 9 C -0.03 -0.63 7.13 -36.80 -0.26 -0.89 16 10 C 0.59 12.05 7.78 -12.86 -0.10 11.95 16 11 O -0.53 -11.26 15.04 5.19 0.08 -11.18 16 12 N -0.68 -13.90 3.83 -61.63 -0.24 -14.14 16 13 C 0.14 2.62 4.43 -4.04 -0.02 2.61 16 14 C 0.16 3.13 3.00 -67.82 -0.20 2.93 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 16 C -0.13 -2.15 5.34 -26.83 -0.14 -2.29 16 17 C -0.11 -1.77 5.89 -26.68 -0.16 -1.92 16 18 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 19 C 0.17 3.95 5.25 -3.71 -0.02 3.93 16 20 N -0.59 -13.58 2.97 -165.03 -0.49 -14.07 16 21 C -0.25 -6.33 6.86 -15.06 -0.10 -6.44 16 22 H 0.07 1.79 5.91 -52.48 -0.31 1.48 16 23 C 0.01 0.34 5.05 -17.43 -0.09 0.25 16 24 N -0.90 -24.60 11.15 55.49 0.62 -23.98 16 25 Si 0.89 21.57 29.57 -169.99 -5.03 16.54 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.87 7.26 -51.93 -0.38 0.49 16 33 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.02 0.22 8.10 -51.93 -0.42 -0.21 16 35 H 0.10 1.57 7.15 -51.93 -0.37 1.20 16 36 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.20 1.97 8.06 -52.48 -0.42 1.54 16 39 H 0.42 9.12 7.08 -40.82 -0.29 8.83 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.39 7.46 -51.93 -0.39 1.00 16 42 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.19 6.21 -51.93 -0.32 1.86 16 50 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -29.22 394.14 -9.38 -38.59 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.37 Total: 8.37 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.69 Total: 5.39 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -1.36 Total: -60.97 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.13 Total: -13.86 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.22 -9.38 -38.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.378 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds