Wall clock time and date at job start Tue Mar 31 2020 18:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46909 * 110.99632 * 2 1 4 4 C 1.46899 * 111.00312 * 123.95404 * 2 1 3 5 5 C 1.50697 * 109.46898 * 172.15219 * 4 2 1 6 6 C 1.40366 * 126.65084 * 105.02405 * 5 4 2 7 7 C 1.35129 * 107.11595 * 180.29477 * 6 5 4 8 8 O 1.33925 * 108.76657 * 359.74219 * 7 6 5 9 9 C 1.34918 * 109.38980 * 0.02562 * 8 7 6 10 10 C 1.46650 * 125.99013 * 180.02562 * 9 8 7 11 11 O 1.21697 * 120.00049 * 175.08128 * 10 9 8 12 12 N 1.34780 * 120.00375 * 355.08386 * 10 9 8 13 13 C 1.46491 * 120.00016 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46948 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.69494 * 299.08981 * 14 13 12 16 16 C 1.52755 * 109.50948 * 178.97491 * 14 13 12 17 17 C 1.53046 * 109.38653 * 185.70308 * 16 14 13 18 18 C 1.53044 * 109.53459 * 61.23713 * 17 16 14 19 19 C 1.53196 * 109.31200 * 298.64065 * 18 17 16 20 20 N 1.46918 * 108.77763 * 54.63708 * 19 18 17 21 21 C 1.36930 * 120.63439 * 126.36949 * 20 19 18 22 22 H 1.08005 * 120.00456 * 212.67945 * 21 20 19 23 23 C 1.38810 * 120.00062 * 32.95355 * 21 20 19 24 24 N 1.31624 * 119.99778 * 10.24887 * 23 21 20 25 25 Si 1.86796 * 120.00432 * 190.24776 * 23 21 20 26 26 H 1.48501 * 109.47103 * 89.99872 * 25 23 21 27 27 H 1.48499 * 109.47476 * 210.00011 * 25 23 21 28 28 H 1.48506 * 109.47020 * 330.00532 * 25 23 21 29 29 H 1.09001 * 109.46987 * 296.04428 * 1 2 3 30 30 H 1.08996 * 109.47160 * 56.04369 * 1 2 3 31 31 H 1.08993 * 109.46939 * 176.04750 * 1 2 3 32 32 H 1.09002 * 109.46912 * 189.24984 * 3 2 1 33 33 H 1.08998 * 109.47052 * 309.24312 * 3 2 1 34 34 H 1.08997 * 109.47184 * 69.24721 * 3 2 1 35 35 H 1.08992 * 109.46939 * 52.14950 * 4 2 1 36 36 H 1.09001 * 109.46693 * 292.15148 * 4 2 1 37 37 H 1.08002 * 126.43724 * 0.03604 * 6 5 4 38 38 H 1.08003 * 125.61470 * 179.77758 * 7 6 5 39 39 H 0.97001 * 119.99233 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.47356 * 60.00464 * 13 12 10 41 41 H 1.09006 * 109.47467 * 299.99842 * 13 12 10 42 42 H 1.09008 * 109.56862 * 65.66756 * 16 14 13 43 43 H 1.09003 * 109.38894 * 305.63074 * 16 14 13 44 44 H 1.09004 * 109.45783 * 301.22374 * 17 16 14 45 45 H 1.08995 * 109.45260 * 181.25089 * 17 16 14 46 46 H 1.08998 * 109.49488 * 178.68775 * 18 17 16 47 47 H 1.09004 * 109.52161 * 58.60390 * 18 17 16 48 48 H 1.08997 * 109.58634 * 294.84320 * 19 18 17 49 49 H 1.09004 * 109.70208 * 174.49450 * 19 18 17 50 50 H 0.97006 * 119.99904 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7660 1.1376 5 6 3.4896 -0.9070 0.9997 6 6 4.4676 -0.2138 1.7299 7 6 5.6710 -0.6378 1.2851 8 8 5.4781 -1.5549 0.3284 9 6 4.1542 -1.7356 0.1416 10 6 3.5371 -2.6570 -0.8180 11 8 2.3285 -2.7992 -0.8343 12 7 4.3083 -3.3463 -1.6821 13 6 3.6919 -4.2670 -2.6403 14 6 4.7810 -4.9166 -3.4965 15 1 5.3203 -4.1479 -4.0501 16 6 4.1413 -5.8959 -4.4789 17 6 5.2396 -6.6476 -5.2346 18 6 6.0911 -7.4429 -4.2423 19 6 6.7564 -6.4765 -3.2572 20 7 5.7163 -5.6486 -2.6317 21 6 5.6171 -5.5651 -1.2685 22 1 4.6500 -5.4405 -0.8040 23 6 6.7599 -5.6350 -0.4838 24 7 7.9487 -5.5780 -1.0460 25 14 6.6110 -5.8097 1.3700 26 1 6.5762 -7.2499 1.7302 27 1 7.7777 -5.1640 2.0235 28 1 5.3604 -5.1542 1.8301 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0726 1.3473 -0.1652 33 1 1.5187 1.9437 -0.7959 34 1 1.7857 1.8412 0.9610 35 1 1.5371 -1.7547 1.1531 36 1 1.7640 -0.2434 2.0657 37 1 4.2913 0.5233 2.4993 38 1 6.6305 -0.2941 1.6426 39 1 5.2716 -3.2332 -1.6688 40 1 3.0044 -3.7166 -3.2825 41 1 3.1448 -5.0404 -2.1009 42 1 3.5209 -5.3484 -5.1885 43 1 3.5246 -6.6079 -3.9302 44 1 5.8705 -5.9333 -5.7635 45 1 4.7844 -7.3308 -5.9516 46 1 6.8586 -7.9963 -4.7835 47 1 5.4569 -8.1405 -3.6953 48 1 7.4601 -5.8378 -3.7909 49 1 7.2853 -7.0409 -2.4892 50 1 8.7474 -5.6265 -0.4976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024623751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:14 Heat of formation + Delta-G solvation = -8.770914 kcal Electronic energy + Delta-G solvation = -30910.314910 eV Core-core repulsion = 26939.313935 eV Total energy + Delta-G solvation = -3971.000975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.65294 -40.53342 -39.23750 -38.36474 -35.71492 -34.89443 -34.18972 -32.50007 -31.71279 -30.98579 -28.49553 -28.39833 -27.53406 -26.39710 -24.04100 -23.71627 -23.01244 -22.41802 -21.81362 -20.84895 -20.51195 -19.15130 -18.15754 -17.53648 -17.19594 -17.01415 -16.73097 -16.12620 -16.11024 -16.00623 -15.70007 -15.43444 -15.12479 -14.98106 -14.79687 -14.55074 -14.16494 -14.04653 -13.81184 -13.59189 -13.40123 -13.37216 -13.08026 -12.86364 -12.79503 -12.67926 -12.58266 -12.56373 -12.45976 -12.33627 -12.03227 -11.78356 -11.51444 -11.23232 -11.08600 -10.92366 -10.75958 -10.51489 -9.92950 -9.48322 -9.18455 -8.51746 -7.82471 -5.31118 0.14402 1.37594 1.41491 1.42155 1.48139 1.87825 2.28342 2.45568 2.51753 3.18918 3.33785 3.59695 3.71815 3.85113 3.96966 4.01338 4.23689 4.28176 4.29245 4.36872 4.44014 4.48553 4.53045 4.56790 4.58156 4.67164 4.71865 4.74876 4.77550 4.88344 4.99291 5.01337 5.02098 5.04060 5.05792 5.15589 5.23617 5.29958 5.38952 5.43502 5.48017 5.60395 5.65176 5.75624 5.86243 5.95461 6.11766 6.19958 6.46462 6.70525 7.21471 7.26968 7.89200 8.42852 9.21957 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.004354 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.234438 B = 6429.971286 C = 7949.526353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.555 5.555 3 C 0.030 3.970 4 C 0.131 3.869 5 C -0.099 4.099 6 C -0.220 4.220 7 C -0.009 4.009 8 O -0.179 6.179 9 C -0.084 4.084 10 C 0.588 3.412 11 O -0.547 6.547 12 N -0.689 5.689 13 C 0.142 3.858 14 C 0.159 3.841 15 H 0.029 0.971 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.135 4.135 19 C 0.179 3.821 20 N -0.601 5.601 21 C -0.233 4.233 22 H 0.057 0.943 23 C -0.028 4.028 24 N -0.923 5.923 25 Si 0.936 3.064 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.185 0.815 38 H 0.245 0.755 39 H 0.410 0.590 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.045 0.955 48 H -0.001 1.001 49 H 0.050 0.950 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 11.455 0.367 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.280 5.280 3 C -0.118 4.118 4 C 0.004 3.996 5 C -0.103 4.103 6 C -0.239 4.239 7 C -0.078 4.078 8 O -0.074 6.074 9 C -0.137 4.137 10 C 0.375 3.625 11 O -0.428 6.428 12 N -0.338 5.338 13 C 0.018 3.982 14 C 0.053 3.947 15 H 0.047 0.953 16 C -0.160 4.160 17 C -0.140 4.140 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.326 5.326 21 C -0.364 4.364 22 H 0.075 0.925 23 C -0.225 4.225 24 N -0.569 5.569 25 Si 0.767 3.233 26 H -0.218 1.218 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.202 0.798 38 H 0.261 0.739 39 H 0.247 0.753 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.018 0.982 49 H 0.068 0.932 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.576 10.945 -0.209 13.906 hybrid contribution 0.646 0.098 2.079 2.180 sum -7.930 11.043 1.871 13.724 Atomic orbital electron populations 1.22309 0.85914 1.02084 1.01109 1.61788 1.08911 1.14275 1.43001 1.22370 1.00438 0.88041 1.00959 1.20380 0.88165 0.98974 0.92118 1.20636 0.97347 0.96278 0.95990 1.21971 0.90768 1.05778 1.05389 1.25207 1.02361 0.90465 0.89734 1.84174 1.25358 1.49775 1.48091 1.22016 0.81040 1.05558 1.05077 1.16761 0.86018 0.79561 0.80161 1.90761 1.13344 1.67005 1.71709 1.46012 1.11236 1.41578 1.35010 1.21301 0.95174 0.91383 0.90307 1.20811 0.89870 0.92831 0.91166 0.95301 1.21816 0.97944 0.98441 0.97845 1.21345 0.96847 0.98756 0.97026 1.22057 0.99315 0.98317 0.97757 1.20581 0.89343 0.91173 0.93576 1.44232 1.34935 1.51990 1.01448 1.19138 0.91385 1.43287 0.82580 0.92516 1.25496 0.95597 1.01646 0.99730 1.70089 0.96863 1.55454 1.34542 0.85747 0.76573 0.77306 0.83723 1.21756 1.21587 1.21147 0.94488 0.90446 0.92447 0.92711 0.90693 0.94362 0.91096 0.92179 0.79765 0.73941 0.75334 0.90552 0.93322 0.89848 0.92677 0.92507 0.90607 0.91728 0.93578 0.98244 0.93157 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.57 127.69 1.22 1.97 16 2 N -0.56 -15.15 4.97 -953.47 -4.73 -19.89 16 3 C 0.03 0.65 9.31 127.69 1.19 1.84 16 4 C 0.13 3.76 4.54 85.56 0.39 4.14 16 5 C -0.10 -3.11 4.58 -19.74 -0.09 -3.20 16 6 C -0.22 -5.36 10.67 22.07 0.24 -5.12 16 7 C -0.01 -0.22 12.08 67.10 0.81 0.59 16 8 O -0.18 -6.51 10.41 -5.02 -0.05 -6.57 16 9 C -0.08 -3.21 7.13 24.07 0.17 -3.03 16 10 C 0.59 24.77 7.78 86.44 0.67 25.44 16 11 O -0.55 -24.13 15.04 -4.34 -0.07 -24.20 16 12 N -0.69 -29.02 3.83 -467.10 -1.79 -30.81 16 13 C 0.14 5.54 4.43 86.38 0.38 5.92 16 14 C 0.16 6.20 3.00 44.83 0.13 6.33 16 15 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 16 C -0.12 -3.84 5.34 30.53 0.16 -3.68 16 17 C -0.10 -3.10 5.89 30.62 0.18 -2.91 16 18 C -0.14 -4.90 6.08 30.67 0.19 -4.71 16 19 C 0.18 8.26 5.25 86.37 0.45 8.72 16 20 N -0.60 -28.27 2.97 -676.03 -2.01 -30.28 16 21 C -0.23 -12.14 6.86 84.03 0.58 -11.56 16 22 H 0.06 3.08 5.91 -2.91 -0.02 3.06 16 23 C -0.03 -1.52 5.05 84.86 0.43 -1.09 16 24 N -0.92 -52.15 11.15 21.65 0.24 -51.91 16 25 Si 0.94 45.53 29.57 68.60 2.03 47.56 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.32 7.26 -2.39 -0.02 1.30 16 33 H 0.07 1.43 8.03 -2.39 -0.02 1.41 16 34 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 35 H 0.07 2.38 7.15 -2.39 -0.02 2.36 16 36 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 37 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.24 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.41 18.64 7.08 -92.71 -0.66 17.98 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.05 2.07 7.46 -2.38 -0.02 2.05 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 49 H 0.05 2.67 6.21 -2.39 -0.01 2.65 16 50 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 Total: -1.00 -66.11 394.14 1.00 -65.12 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.27 Total: 31.34 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 7.10 Total: 19.64 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -8.29 Total: -132.89 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.12 Total: -30.77 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.11 1.00 -65.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.346 kcal (2) G-P(sol) polarization free energy of solvation -66.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds