Wall clock time and date at job start Tue Mar 31 2020 18:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46908 * 110.99521 * 2 1 4 4 C 1.46896 * 110.99991 * 123.95146 * 2 1 3 5 5 C 1.50705 * 109.47193 * 66.05281 * 4 2 1 6 6 C 1.40365 * 126.64107 * 260.04366 * 5 4 2 7 7 C 1.35136 * 107.11242 * 179.97438 * 6 5 4 8 8 O 1.33925 * 108.76472 * 359.76365 * 7 6 5 9 9 C 1.34907 * 109.39025 * 0.38390 * 8 7 6 10 10 C 1.46659 * 125.99441 * 179.88294 * 9 8 7 11 11 O 1.21693 * 120.00142 * 179.68700 * 10 9 8 12 12 N 1.34777 * 119.99617 * 359.68934 * 10 9 8 13 13 C 1.46498 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47219 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.70364 * 59.95834 * 14 13 12 16 16 C 1.53621 * 109.66597 * 180.55713 * 14 13 12 17 17 C 1.53039 * 109.24257 * 174.54644 * 16 14 13 18 18 C 1.53032 * 109.53885 * 298.50867 * 17 16 14 19 19 C 1.53196 * 109.31416 * 61.36705 * 18 17 16 20 20 N 1.46926 * 108.77206 * 305.36602 * 19 18 17 21 21 C 1.36941 * 120.62995 * 233.58937 * 20 19 18 22 22 H 1.08000 * 120.00553 * 148.91050 * 21 20 19 23 23 C 1.38816 * 119.99616 * 328.90351 * 21 20 19 24 24 N 1.31611 * 120.00364 * 347.46295 * 23 21 20 25 25 Si 1.86801 * 119.99872 * 167.45662 * 23 21 20 26 26 H 1.48491 * 109.47135 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.47153 * 300.00676 * 25 23 21 28 28 H 1.48499 * 109.47122 * 60.00015 * 25 23 21 29 29 H 1.09003 * 109.46923 * 296.04184 * 1 2 3 30 30 H 1.09000 * 109.47007 * 56.04716 * 1 2 3 31 31 H 1.09005 * 109.46582 * 176.04636 * 1 2 3 32 32 H 1.09000 * 109.46330 * 183.95411 * 3 2 1 33 33 H 1.09000 * 109.46756 * 303.95405 * 3 2 1 34 34 H 1.09001 * 109.46695 * 63.95446 * 3 2 1 35 35 H 1.08991 * 109.47307 * 306.04922 * 4 2 1 36 36 H 1.09005 * 109.46688 * 186.04728 * 4 2 1 37 37 H 1.07997 * 126.44648 * 359.95402 * 6 5 4 38 38 H 1.08001 * 125.61244 * 179.97438 * 7 6 5 39 39 H 0.96998 * 120.00040 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46933 * 60.00232 * 13 12 10 41 41 H 1.09005 * 109.47372 * 299.99924 * 13 12 10 42 42 H 1.08998 * 109.63602 * 54.55057 * 16 14 13 43 43 H 1.09001 * 109.42745 * 294.41201 * 16 14 13 44 44 H 1.08998 * 109.46524 * 178.48400 * 17 16 14 45 45 H 1.09006 * 109.44702 * 58.52489 * 17 16 14 46 46 H 1.08993 * 109.50249 * 301.41118 * 18 17 16 47 47 H 1.09007 * 109.50194 * 181.31531 * 18 17 16 48 48 H 1.09002 * 109.58861 * 185.58151 * 19 18 17 49 49 H 1.08998 * 109.70538 * 65.21893 * 19 18 17 50 50 H 0.96995 * 120.00534 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6371 -2.2204 0.9728 6 6 0.5818 -2.8996 1.6016 7 6 0.6220 -4.1805 1.1730 8 8 1.6407 -4.3158 0.3143 9 6 2.2755 -3.1327 0.1825 10 6 3.4430 -2.8707 -0.6656 11 8 3.9274 -1.7551 -0.7063 12 7 3.9792 -3.8656 -1.3999 13 6 5.1450 -3.6038 -2.2476 14 6 5.5505 -4.8908 -2.9689 15 1 4.7245 -5.2411 -3.5877 16 6 6.7814 -4.6246 -3.8486 17 6 7.2606 -5.9440 -4.4581 18 6 7.6672 -6.9065 -3.3400 19 6 6.4516 -7.1966 -2.4540 20 7 5.8967 -5.9212 -1.9804 21 6 5.7006 -5.6993 -0.6434 22 1 5.7860 -4.6997 -0.2436 23 6 5.3920 -6.7593 0.1981 24 7 5.0458 -7.9232 -0.3093 25 14 5.4683 -6.5338 2.0509 26 1 5.0968 -7.8062 2.7202 27 1 6.8476 -6.1511 2.4466 28 1 4.5219 -5.4646 2.4588 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6610 1.1756 37 1 -0.1284 -2.4779 2.2973 38 1 -0.0578 -4.9650 1.4711 39 1 3.5928 -4.7547 -1.3678 40 1 5.9731 -3.2570 -1.6295 41 1 4.8952 -2.8389 -2.9830 42 1 7.5782 -4.1931 -3.2427 43 1 6.5140 -3.9313 -4.6461 44 1 8.1177 -5.7554 -5.1045 45 1 6.4549 -6.3871 -5.0436 46 1 8.4557 -6.4537 -2.7389 47 1 8.0304 -7.8375 -3.7754 48 1 6.7574 -7.8014 -1.6004 49 1 5.6967 -7.7321 -3.0297 50 1 4.8305 -8.6640 0.2787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024623753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:18 Heat of formation + Delta-G solvation = 9.669817 kcal Electronic energy + Delta-G solvation = -30835.924137 eV Core-core repulsion = 26865.722812 eV Total energy + Delta-G solvation = -3970.201325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42356 -38.96391 -37.66511 -37.25436 -34.19318 -33.07646 -32.94489 -30.94657 -29.93586 -29.70842 -27.49518 -27.23985 -25.88960 -24.73724 -22.70073 -22.10498 -21.89694 -21.01206 -20.37728 -19.39740 -19.01566 -17.73317 -16.43112 -16.16316 -15.76894 -15.49633 -15.22968 -15.06313 -15.02869 -14.42689 -14.17548 -13.99696 -13.63594 -13.49143 -13.32925 -13.00727 -12.81171 -12.71931 -12.41792 -12.38507 -12.08635 -11.95698 -11.72770 -11.66988 -11.57624 -11.34549 -11.16878 -10.91239 -10.74959 -10.52653 -10.28188 -10.12480 -9.97150 -9.68656 -9.57915 -9.45676 -9.29533 -8.58127 -8.42936 -8.20962 -8.08249 -6.62536 -5.81225 -3.27962 1.45109 2.52348 3.10111 3.36733 3.40964 3.45032 3.72638 3.92170 4.22164 4.46246 4.85844 4.93368 5.18718 5.24890 5.28607 5.33796 5.35835 5.43262 5.50820 5.54575 5.61657 5.66980 5.70718 5.74788 5.82575 5.91404 5.97485 5.99380 6.06786 6.15761 6.17620 6.19070 6.35121 6.38528 6.43698 6.52951 6.61887 6.73632 6.75795 6.88254 6.99984 7.06511 7.12080 7.16994 7.24719 7.41189 7.68827 7.81169 8.28463 8.43691 8.82191 9.19362 9.80499 10.38512 11.25526 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.004245 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.697860 B = 6594.125062 C = 8020.147601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.530 5.530 3 C 0.031 3.969 4 C 0.127 3.873 5 C -0.108 4.108 6 C -0.224 4.224 7 C -0.015 4.015 8 O -0.152 6.152 9 C -0.035 4.035 10 C 0.592 3.408 11 O -0.528 6.528 12 N -0.683 5.683 13 C 0.136 3.864 14 C 0.159 3.841 15 H 0.032 0.968 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.173 3.827 20 N -0.588 5.588 21 C -0.251 4.251 22 H 0.069 0.931 23 C 0.012 3.988 24 N -0.899 5.899 25 Si 0.892 3.108 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.281 1.281 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.019 0.981 35 H 0.036 0.964 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.204 0.796 39 H 0.418 0.582 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.018 0.982 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 9.782 -0.853 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.254 5.254 3 C -0.118 4.118 4 C 0.000 4.000 5 C -0.111 4.111 6 C -0.244 4.244 7 C -0.085 4.085 8 O -0.045 6.045 9 C -0.088 4.088 10 C 0.377 3.623 11 O -0.408 6.408 12 N -0.333 5.333 13 C 0.012 3.988 14 C 0.052 3.948 15 H 0.050 0.950 16 C -0.166 4.166 17 C -0.145 4.145 18 C -0.183 4.183 19 C 0.048 3.952 20 N -0.312 5.312 21 C -0.381 4.381 22 H 0.086 0.914 23 C -0.188 4.188 24 N -0.543 5.543 25 Si 0.721 3.279 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.207 1.207 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.166 0.834 38 H 0.221 0.779 39 H 0.257 0.743 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.036 0.964 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.834 9.903 -1.406 12.114 hybrid contribution -0.643 -0.112 2.039 2.141 sum -7.477 9.791 0.633 12.335 Atomic orbital electron populations 1.22411 0.88002 1.02271 0.99705 1.61835 1.07134 1.13401 1.43007 1.22328 1.01444 0.88330 0.99654 1.20444 1.01440 0.87469 0.90644 1.20225 0.96214 0.96230 0.98474 1.21595 1.02171 0.94284 1.06340 1.24229 0.91784 0.98663 0.93805 1.84187 1.35966 1.33311 1.51071 1.22185 0.98719 0.83473 1.04462 1.16494 0.81147 0.85028 0.79662 1.90797 1.61577 1.22326 1.66064 1.45955 1.30685 1.13092 1.43584 1.21321 0.87793 0.96878 0.92796 1.20831 0.94031 0.88963 0.90950 0.95002 1.22005 0.99186 0.96855 0.98566 1.21360 0.99430 0.96203 0.97507 1.22195 1.00963 0.97570 0.97595 1.20769 0.90379 0.87728 0.96345 1.44082 1.72351 1.13135 1.01681 1.19128 1.41640 0.94425 0.82869 0.91379 1.25045 0.99088 0.96897 0.97745 1.69973 1.48427 1.02256 1.33654 0.86529 0.78190 0.76908 0.86226 1.21633 1.21061 1.20743 0.96198 0.91810 0.91300 0.90846 0.91659 0.96287 0.94546 0.88522 0.83414 0.77894 0.74340 0.91373 0.92352 0.92055 0.93052 0.93756 0.92905 0.92852 0.93591 0.89608 0.96428 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.37 60.07 0.56 0.85 16 2 N -0.53 -7.52 5.01 -252.71 -1.27 -8.78 16 3 C 0.03 0.36 9.57 60.07 0.57 0.94 16 4 C 0.13 1.90 4.60 -4.98 -0.02 1.87 16 5 C -0.11 -1.75 4.76 -104.43 -0.50 -2.25 16 6 C -0.22 -3.03 10.23 -39.89 -0.41 -3.43 16 7 C -0.01 -0.20 12.08 29.63 0.36 0.16 16 8 O -0.15 -2.73 10.40 5.03 0.05 -2.68 16 9 C -0.03 -0.65 7.13 -36.80 -0.26 -0.91 16 10 C 0.59 11.99 7.79 -12.86 -0.10 11.89 16 11 O -0.53 -11.21 14.99 5.20 0.08 -11.13 16 12 N -0.68 -13.82 3.85 -61.62 -0.24 -14.06 16 13 C 0.14 2.60 4.44 -4.04 -0.02 2.59 16 14 C 0.16 3.11 3.03 -67.37 -0.20 2.91 16 15 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 16 C -0.13 -2.13 5.40 -26.39 -0.14 -2.27 16 17 C -0.11 -1.77 5.88 -26.69 -0.16 -1.93 16 18 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 19 C 0.17 3.93 5.26 -3.71 -0.02 3.91 16 20 N -0.59 -13.57 2.97 -164.52 -0.49 -14.05 16 21 C -0.25 -6.34 6.98 -15.06 -0.11 -6.45 16 22 H 0.07 1.77 5.87 -52.49 -0.31 1.47 16 23 C 0.01 0.31 5.00 -17.43 -0.09 0.22 16 24 N -0.90 -24.59 11.14 55.49 0.62 -23.98 16 25 Si 0.89 21.54 29.57 -169.99 -5.03 16.51 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.07 0.86 6.80 -51.93 -0.35 0.50 16 32 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 33 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.10 1.61 6.94 -51.93 -0.36 1.25 16 37 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.20 1.94 8.06 -52.49 -0.42 1.51 16 39 H 0.42 9.06 7.16 -40.82 -0.29 8.76 16 40 H 0.07 1.41 7.41 -51.93 -0.38 1.02 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 2.20 6.15 -51.93 -0.32 1.88 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -29.18 393.62 -9.36 -38.55 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.34 Total: 8.46 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.69 Total: 5.24 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -1.37 Total: -60.87 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.13 Total: -13.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.18 -9.36 -38.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.216 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds