Wall clock time and date at job start Tue Mar 31 2020 18:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46908 * 110.99521 * 2 1 4 4 C 1.46896 * 110.99991 * 123.95146 * 2 1 3 5 5 C 1.50705 * 109.47193 * 66.05281 * 4 2 1 6 6 C 1.40365 * 126.64107 * 260.04366 * 5 4 2 7 7 C 1.35136 * 107.11242 * 179.97438 * 6 5 4 8 8 O 1.33925 * 108.76472 * 359.76365 * 7 6 5 9 9 C 1.34907 * 109.39025 * 0.38390 * 8 7 6 10 10 C 1.46659 * 125.99441 * 179.88294 * 9 8 7 11 11 O 1.21693 * 120.00142 * 179.68700 * 10 9 8 12 12 N 1.34777 * 119.99617 * 359.68934 * 10 9 8 13 13 C 1.46498 * 119.99893 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47219 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.70364 * 59.95834 * 14 13 12 16 16 C 1.53621 * 109.66597 * 180.55713 * 14 13 12 17 17 C 1.53039 * 109.24257 * 174.54644 * 16 14 13 18 18 C 1.53032 * 109.53885 * 298.50867 * 17 16 14 19 19 C 1.53196 * 109.31416 * 61.36705 * 18 17 16 20 20 N 1.46926 * 108.77206 * 305.36602 * 19 18 17 21 21 C 1.36941 * 120.62995 * 233.58937 * 20 19 18 22 22 H 1.08000 * 120.00553 * 148.91050 * 21 20 19 23 23 C 1.38816 * 119.99616 * 328.90351 * 21 20 19 24 24 N 1.31611 * 120.00364 * 347.46295 * 23 21 20 25 25 Si 1.86801 * 119.99872 * 167.45662 * 23 21 20 26 26 H 1.48491 * 109.47135 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.47153 * 300.00676 * 25 23 21 28 28 H 1.48499 * 109.47122 * 60.00015 * 25 23 21 29 29 H 1.09003 * 109.46923 * 296.04184 * 1 2 3 30 30 H 1.09000 * 109.47007 * 56.04716 * 1 2 3 31 31 H 1.09005 * 109.46582 * 176.04636 * 1 2 3 32 32 H 1.09000 * 109.46330 * 183.95411 * 3 2 1 33 33 H 1.09000 * 109.46756 * 303.95405 * 3 2 1 34 34 H 1.09001 * 109.46695 * 63.95446 * 3 2 1 35 35 H 1.08991 * 109.47307 * 306.04922 * 4 2 1 36 36 H 1.09005 * 109.46688 * 186.04728 * 4 2 1 37 37 H 1.07997 * 126.44648 * 359.95402 * 6 5 4 38 38 H 1.08001 * 125.61244 * 179.97438 * 7 6 5 39 39 H 0.96998 * 120.00040 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46933 * 60.00232 * 13 12 10 41 41 H 1.09005 * 109.47372 * 299.99924 * 13 12 10 42 42 H 1.08998 * 109.63602 * 54.55057 * 16 14 13 43 43 H 1.09001 * 109.42745 * 294.41201 * 16 14 13 44 44 H 1.08998 * 109.46524 * 178.48400 * 17 16 14 45 45 H 1.09006 * 109.44702 * 58.52489 * 17 16 14 46 46 H 1.08993 * 109.50249 * 301.41118 * 18 17 16 47 47 H 1.09007 * 109.50194 * 181.31531 * 18 17 16 48 48 H 1.09002 * 109.58861 * 185.58151 * 19 18 17 49 49 H 1.08998 * 109.70538 * 65.21893 * 19 18 17 50 50 H 0.96995 * 120.00534 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6371 -2.2204 0.9728 6 6 0.5818 -2.8996 1.6016 7 6 0.6220 -4.1805 1.1730 8 8 1.6407 -4.3158 0.3143 9 6 2.2755 -3.1327 0.1825 10 6 3.4430 -2.8707 -0.6656 11 8 3.9274 -1.7551 -0.7063 12 7 3.9792 -3.8656 -1.3999 13 6 5.1450 -3.6038 -2.2476 14 6 5.5505 -4.8908 -2.9689 15 1 4.7245 -5.2411 -3.5877 16 6 6.7814 -4.6246 -3.8486 17 6 7.2606 -5.9440 -4.4581 18 6 7.6672 -6.9065 -3.3400 19 6 6.4516 -7.1966 -2.4540 20 7 5.8967 -5.9212 -1.9804 21 6 5.7006 -5.6993 -0.6434 22 1 5.7860 -4.6997 -0.2436 23 6 5.3920 -6.7593 0.1981 24 7 5.0458 -7.9232 -0.3093 25 14 5.4683 -6.5338 2.0509 26 1 5.0968 -7.8062 2.7202 27 1 6.8476 -6.1511 2.4466 28 1 4.5219 -5.4646 2.4588 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0798 -0.6610 1.1756 37 1 -0.1284 -2.4779 2.2973 38 1 -0.0578 -4.9650 1.4711 39 1 3.5928 -4.7547 -1.3678 40 1 5.9731 -3.2570 -1.6295 41 1 4.8952 -2.8389 -2.9830 42 1 7.5782 -4.1931 -3.2427 43 1 6.5140 -3.9313 -4.6461 44 1 8.1177 -5.7554 -5.1045 45 1 6.4549 -6.3871 -5.0436 46 1 8.4557 -6.4537 -2.7389 47 1 8.0304 -7.8375 -3.7754 48 1 6.7574 -7.8014 -1.6004 49 1 5.6967 -7.7321 -3.0297 50 1 4.8305 -8.6640 0.2787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024623753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:17 Heat of formation + Delta-G solvation = -8.895510 kcal Electronic energy + Delta-G solvation = -30836.729190 eV Core-core repulsion = 26865.722812 eV Total energy + Delta-G solvation = -3971.006378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.65355 -40.53534 -39.22432 -38.36885 -35.72881 -34.88633 -34.18813 -32.50408 -31.69129 -30.99216 -28.49320 -28.40366 -27.53093 -26.40363 -24.02861 -23.71116 -23.02700 -22.40888 -21.81540 -20.86304 -20.52488 -19.15598 -18.16024 -17.53129 -17.18806 -17.03528 -16.73346 -16.13085 -16.11786 -16.01183 -15.69755 -15.44266 -15.14065 -14.99013 -14.80261 -14.53825 -14.16761 -14.04415 -13.82600 -13.58759 -13.40409 -13.36726 -13.09618 -12.84567 -12.80589 -12.66533 -12.58303 -12.54890 -12.43833 -12.32796 -12.04270 -11.79797 -11.51942 -11.23161 -11.08870 -10.91429 -10.77038 -10.50949 -9.94946 -9.48708 -9.19718 -8.53818 -7.82054 -5.28910 0.13718 1.39621 1.41763 1.42179 1.47174 1.87392 2.24999 2.46128 2.51439 3.20009 3.33661 3.59596 3.71154 3.84540 3.96027 4.01648 4.23629 4.27600 4.29199 4.36918 4.44282 4.48347 4.52817 4.56461 4.57759 4.66458 4.70849 4.74986 4.77310 4.88047 4.99812 5.01235 5.01643 5.03848 5.06268 5.15356 5.23727 5.29982 5.38214 5.43113 5.48057 5.59183 5.65227 5.75577 5.86124 5.95212 6.10149 6.19877 6.45616 6.68665 7.21047 7.24867 7.89808 8.42765 9.22123 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.004245 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.697860 B = 6594.125062 C = 8020.147601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.555 5.555 3 C 0.033 3.967 4 C 0.130 3.870 5 C -0.098 4.098 6 C -0.221 4.221 7 C -0.007 4.007 8 O -0.178 6.178 9 C -0.085 4.085 10 C 0.588 3.412 11 O -0.548 6.548 12 N -0.689 5.689 13 C 0.142 3.858 14 C 0.158 3.842 15 H 0.030 0.970 16 C -0.120 4.120 17 C -0.102 4.102 18 C -0.135 4.135 19 C 0.178 3.822 20 N -0.601 5.601 21 C -0.234 4.234 22 H 0.058 0.942 23 C -0.030 4.030 24 N -0.923 5.923 25 Si 0.936 3.064 26 H -0.291 1.291 27 H -0.288 1.288 28 H -0.286 1.286 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.184 0.816 38 H 0.246 0.754 39 H 0.410 0.590 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.051 0.949 49 H -0.001 1.001 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 11.076 -1.126 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.279 5.279 3 C -0.114 4.114 4 C 0.002 3.998 5 C -0.101 4.101 6 C -0.240 4.240 7 C -0.076 4.076 8 O -0.074 6.074 9 C -0.138 4.138 10 C 0.375 3.625 11 O -0.429 6.429 12 N -0.338 5.338 13 C 0.018 3.982 14 C 0.052 3.948 15 H 0.048 0.952 16 C -0.160 4.160 17 C -0.140 4.140 18 C -0.174 4.174 19 C 0.052 3.948 20 N -0.326 5.326 21 C -0.365 4.365 22 H 0.076 0.924 23 C -0.227 4.227 24 N -0.570 5.570 25 Si 0.766 3.234 26 H -0.217 1.217 27 H -0.214 1.214 28 H -0.213 1.213 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.202 0.798 38 H 0.262 0.738 39 H 0.246 0.754 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.017 0.983 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.925 11.226 -1.696 13.845 hybrid contribution -0.385 -0.459 2.132 2.215 sum -8.310 10.766 0.437 13.607 Atomic orbital electron populations 1.22406 0.86428 1.02089 1.01098 1.61781 1.08721 1.14516 1.42924 1.22313 1.00452 0.87568 1.01116 1.20383 1.00154 0.87166 0.92081 1.20631 0.95956 0.96564 0.96989 1.21971 1.01832 0.93812 1.06424 1.25217 0.90480 1.00153 0.91733 1.84156 1.37291 1.33387 1.52521 1.21995 1.00044 0.84747 1.06990 1.16768 0.81565 0.84673 0.79500 1.90763 1.62508 1.22792 1.66828 1.45990 1.30979 1.12694 1.44142 1.21300 0.87043 0.97147 0.92706 1.20996 0.95402 0.87894 0.90477 0.95213 1.21952 0.97334 0.97922 0.98742 1.21346 1.00770 0.95033 0.96856 1.22048 0.98502 0.99229 0.97615 1.20592 0.91541 0.87129 0.95491 1.44271 1.72701 1.13945 1.01681 1.19120 1.39583 0.93652 0.84117 0.92409 1.25462 1.00120 0.97046 1.00048 1.70085 1.50298 1.02586 1.33986 0.85829 0.77570 0.76332 0.83644 1.21676 1.21437 1.21273 0.94428 0.90742 0.92214 0.92506 0.90357 0.94548 0.92299 0.91104 0.79823 0.73814 0.75374 0.93215 0.90525 0.92635 0.89919 0.90622 0.92514 0.93574 0.91733 0.93072 0.98252 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.37 127.69 1.20 1.78 16 2 N -0.56 -15.11 5.01 -953.43 -4.78 -19.89 16 3 C 0.03 0.75 9.57 127.69 1.22 1.97 16 4 C 0.13 3.76 4.60 85.56 0.39 4.15 16 5 C -0.10 -3.09 4.76 -19.74 -0.09 -3.19 16 6 C -0.22 -5.41 10.23 22.07 0.23 -5.19 16 7 C -0.01 -0.17 12.08 67.10 0.81 0.64 16 8 O -0.18 -6.44 10.40 -4.92 -0.05 -6.50 16 9 C -0.09 -3.23 7.13 24.07 0.17 -3.06 16 10 C 0.59 24.63 7.79 86.44 0.67 25.31 16 11 O -0.55 -24.03 14.99 -4.32 -0.06 -24.10 16 12 N -0.69 -28.82 3.85 -467.09 -1.80 -30.62 16 13 C 0.14 5.49 4.44 86.38 0.38 5.87 16 14 C 0.16 6.14 3.03 45.12 0.14 6.28 16 15 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 16 C -0.12 -3.80 5.40 30.82 0.17 -3.63 16 17 C -0.10 -3.10 5.88 30.62 0.18 -2.92 16 18 C -0.13 -4.87 6.08 30.67 0.19 -4.69 16 19 C 0.18 8.22 5.26 86.36 0.45 8.67 16 20 N -0.60 -28.21 2.97 -674.41 -2.00 -30.22 16 21 C -0.23 -12.16 6.98 84.03 0.59 -11.57 16 22 H 0.06 3.12 5.87 -2.91 -0.02 3.10 16 23 C -0.03 -1.64 5.00 84.86 0.42 -1.21 16 24 N -0.92 -52.15 11.14 21.65 0.24 -51.91 16 25 Si 0.94 45.42 29.57 68.60 2.03 47.45 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.06 1.37 6.80 -2.38 -0.02 1.35 16 32 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.07 2.41 6.94 -2.38 -0.02 2.39 16 37 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 38 H 0.25 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.41 18.49 7.16 -92.71 -0.66 17.83 16 40 H 0.05 2.10 7.41 -2.39 -0.02 2.08 16 41 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 48 H 0.05 2.71 6.15 -2.39 -0.01 2.70 16 49 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -66.00 393.62 0.96 -65.04 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.27 Total: 31.53 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 7.12 Total: 19.21 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -8.33 Total: -132.63 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.12 Total: -30.59 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.00 0.96 -65.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024623753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.141 kcal (2) G-P(sol) polarization free energy of solvation -65.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds