Wall clock time and date at job start Tue Mar 31 2020 18:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 110.99927 * 2 1 4 4 C 1.46901 * 110.99743 * 123.95177 * 2 1 3 5 5 C 1.50696 * 109.47261 * 163.94692 * 4 2 1 6 6 C 1.40366 * 126.64707 * 104.68158 * 5 4 2 7 7 C 1.35129 * 107.11585 * 179.84254 * 6 5 4 8 8 O 1.33933 * 108.76666 * 0.42487 * 7 6 5 9 9 C 1.34910 * 109.38254 * 359.73159 * 8 7 6 10 10 C 1.46662 * 125.98590 * 179.97438 * 9 8 7 11 11 O 1.21694 * 119.99951 * 185.20952 * 10 9 8 12 12 N 1.34776 * 119.99765 * 5.21738 * 10 9 8 13 13 C 1.46501 * 119.99534 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47155 * 274.99199 * 13 12 10 15 15 C 1.52995 * 109.47499 * 300.00476 * 14 13 12 16 16 C 1.52997 * 109.47138 * 299.99901 * 15 14 13 17 17 N 1.46499 * 109.47207 * 180.02562 * 16 15 14 18 18 C 1.36931 * 120.00234 * 84.99994 * 17 16 15 19 19 H 1.07996 * 120.00255 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00103 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00240 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46744 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46884 * 119.99732 * 22 20 18 25 25 H 1.48500 * 109.47226 * 239.99969 * 22 20 18 26 26 C 1.53002 * 109.47200 * 59.99591 * 16 15 14 27 27 C 1.52995 * 109.47409 * 300.00243 * 26 16 15 28 28 H 1.08996 * 109.47311 * 296.04688 * 1 2 3 29 29 H 1.08995 * 109.47005 * 56.05159 * 1 2 3 30 30 H 1.09003 * 109.47098 * 176.04945 * 1 2 3 31 31 H 1.08998 * 109.47096 * 183.34043 * 3 2 1 32 32 H 1.08998 * 109.47230 * 303.33911 * 3 2 1 33 33 H 1.08993 * 109.47676 * 63.33896 * 3 2 1 34 34 H 1.09004 * 109.47640 * 43.94721 * 4 2 1 35 35 H 1.09002 * 109.47198 * 283.94727 * 4 2 1 36 36 H 1.07999 * 126.44309 * 359.97438 * 6 5 4 37 37 H 1.07999 * 125.62039 * 180.12646 * 7 6 5 38 38 H 0.96997 * 120.00436 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47763 * 34.99453 * 13 12 10 40 40 H 1.09002 * 109.46635 * 60.00623 * 14 13 12 41 41 H 1.08994 * 109.47608 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47204 * 179.97438 * 15 14 13 43 43 H 1.09006 * 109.47319 * 59.99504 * 15 14 13 44 44 H 1.09001 * 109.46802 * 299.99519 * 16 15 14 45 45 H 0.97001 * 120.00101 * 264.99510 * 17 16 15 46 46 H 0.96997 * 120.00474 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.46991 * 179.97438 * 26 16 15 48 48 H 1.09006 * 109.46975 * 60.00569 * 26 16 15 49 49 H 1.09001 * 109.46882 * 300.00248 * 27 26 16 50 50 H 1.09000 * 109.47330 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4501 -1.0805 0.9014 6 6 4.5512 -0.4635 1.5155 7 6 5.6632 -1.0494 1.0195 8 8 5.2986 -1.9825 0.1305 9 6 3.9527 -2.0169 0.0441 10 6 3.1671 -2.9044 -0.8197 11 8 1.9582 -2.7790 -0.8820 12 7 3.7839 -3.8587 -1.5443 13 6 2.9990 -4.7455 -2.4068 14 6 2.4689 -5.9205 -1.5825 15 6 3.6447 -6.6976 -0.9873 16 6 4.5311 -7.2259 -2.1169 17 7 5.6566 -7.9705 -1.5469 18 6 5.5087 -9.2924 -1.2219 19 1 4.5622 -9.7861 -1.3854 20 6 6.5751 -9.9978 -0.6814 21 7 7.7285 -9.3962 -0.4817 22 14 6.3731 -11.8011 -0.2373 23 1 4.9903 -12.2378 -0.5577 24 1 7.3414 -12.6141 -1.0162 25 1 6.6271 -11.9849 1.2142 26 6 5.0612 -6.0510 -2.9412 27 6 3.8854 -5.2739 -3.5365 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0834 1.3429 -0.0599 32 1 1.5984 1.9130 -0.8585 33 1 1.6952 1.8759 0.9183 34 1 1.4349 -1.6951 1.2407 35 1 1.8944 -0.1776 2.0497 36 1 4.5162 0.3290 2.2484 37 1 6.6789 -0.8025 1.2911 38 1 4.7475 -3.9585 -1.4949 39 1 2.1612 -4.1920 -2.8309 40 1 1.8374 -5.5441 -0.7777 41 1 1.8845 -6.5801 -2.2240 42 1 3.2670 -7.5344 -0.3997 43 1 4.2288 -6.0378 -0.3456 44 1 3.9471 -7.8858 -2.7585 45 1 6.5067 -7.5271 -1.3998 46 1 8.4738 -9.8892 -0.1043 47 1 5.6930 -6.4274 -3.7457 48 1 5.6452 -5.3911 -2.2995 49 1 3.3014 -5.9338 -4.1781 50 1 4.2630 -4.4366 -4.1234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026550261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:02 Heat of formation + Delta-G solvation = -9.102101 kcal Electronic energy + Delta-G solvation = -29899.923992 eV Core-core repulsion = 25928.908656 eV Total energy + Delta-G solvation = -3971.015336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.81403 -39.84979 -37.94593 -37.42410 -34.63804 -33.45241 -32.67611 -30.96050 -30.40438 -30.02702 -27.84487 -27.68715 -27.06655 -23.88373 -23.26804 -22.26813 -22.16647 -21.55932 -20.79779 -19.88690 -18.80171 -18.25810 -17.05554 -16.51672 -16.33313 -15.53696 -15.37225 -15.30416 -15.27730 -14.72813 -14.71316 -14.35571 -13.91408 -13.52666 -13.43614 -13.43118 -13.08974 -13.05575 -12.63420 -12.40239 -12.34299 -12.17005 -11.90920 -11.82660 -11.79103 -11.62124 -11.56833 -10.99330 -10.87505 -10.76496 -10.36935 -10.15228 -10.08545 -10.04331 -9.92021 -9.66761 -9.54880 -8.96841 -8.82995 -8.62745 -8.43066 -6.92453 -5.74829 -3.02812 1.03217 2.18850 2.65977 3.23554 3.36247 3.44018 3.49968 3.51893 3.95836 4.53500 4.59611 4.60155 4.79718 4.99533 5.03319 5.10173 5.11968 5.17711 5.20071 5.27260 5.38949 5.44139 5.53354 5.55064 5.60128 5.69233 5.72524 5.74985 5.81539 5.83213 5.84571 5.91698 5.97269 6.05234 6.12416 6.17049 6.30799 6.39410 6.53655 6.55478 6.66081 6.75652 6.80236 6.89651 6.94015 7.01860 7.17467 7.62646 7.72981 8.25287 8.44209 9.55232 10.14054 10.48377 11.48067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002685 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.433009 B =10427.360519 C =11086.614589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.529 5.529 3 C 0.024 3.976 4 C 0.126 3.874 5 C -0.094 4.094 6 C -0.223 4.223 7 C -0.008 4.008 8 O -0.161 6.161 9 C -0.052 4.052 10 C 0.600 3.400 11 O -0.505 6.505 12 N -0.709 5.709 13 C 0.150 3.850 14 C -0.128 4.128 15 C -0.132 4.132 16 C 0.178 3.822 17 N -0.726 5.726 18 C -0.234 4.234 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.151 0.849 37 H 0.208 0.792 38 H 0.404 0.596 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.382 0.618 46 H 0.254 0.746 47 H 0.067 0.933 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 22.542 0.408 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.252 5.252 3 C -0.124 4.124 4 C -0.002 4.002 5 C -0.097 4.097 6 C -0.242 4.242 7 C -0.078 4.078 8 O -0.056 6.056 9 C -0.105 4.105 10 C 0.386 3.614 11 O -0.382 6.382 12 N -0.361 5.361 13 C 0.046 3.954 14 C -0.167 4.167 15 C -0.173 4.173 16 C 0.068 3.932 17 N -0.366 5.366 18 C -0.365 4.365 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 C -0.164 4.164 27 C -0.161 4.161 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.169 0.831 37 H 0.225 0.775 38 H 0.241 0.759 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.216 0.784 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.204 21.986 -0.254 24.240 hybrid contribution 0.640 -0.305 1.466 1.629 sum -9.564 21.681 1.212 23.728 Atomic orbital electron populations 1.22328 0.86818 1.02784 0.99733 1.61793 1.07875 1.12886 1.42656 1.22415 1.00982 0.89012 1.00005 1.20429 0.89780 0.98962 0.91007 1.20326 0.96404 0.95927 0.97080 1.21676 0.91580 1.05017 1.05948 1.24300 1.00440 0.90756 0.92263 1.84111 1.22545 1.48545 1.50397 1.22070 0.80173 1.03632 1.04603 1.16478 0.86415 0.79368 0.79175 1.90857 1.12069 1.70820 1.64436 1.46069 1.11607 1.33300 1.45161 1.21008 0.93935 0.90292 0.90160 1.21929 0.98663 0.96413 0.99716 1.22215 0.96102 0.99002 0.99980 1.20223 0.89754 0.91054 0.92144 1.42435 1.10290 1.08792 1.75055 1.19286 0.96839 0.86610 1.33793 0.91198 1.24729 0.95982 0.98159 1.02264 1.69665 1.02087 1.35631 1.50884 0.86151 0.77181 0.85348 0.77748 1.20584 1.21936 1.21959 1.21819 0.96996 0.97677 0.99895 1.21799 0.97565 0.99900 0.96806 0.96228 0.91597 0.90718 0.91511 0.91628 0.96038 0.88931 0.94099 0.83079 0.77504 0.75947 0.89668 0.92253 0.91343 0.92184 0.92860 0.93545 0.78416 0.93653 0.91456 0.92635 0.90286 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.54 60.07 0.57 0.88 16 2 N -0.53 -5.95 4.62 -252.73 -1.17 -7.12 16 3 C 0.02 0.22 9.40 60.06 0.56 0.79 16 4 C 0.13 1.42 4.50 -4.98 -0.02 1.40 16 5 C -0.09 -1.13 4.92 -104.44 -0.51 -1.65 16 6 C -0.22 -2.13 10.58 -39.89 -0.42 -2.56 16 7 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 8 O -0.16 -2.00 10.41 5.00 0.05 -1.94 16 9 C -0.05 -0.70 7.12 -36.80 -0.26 -0.96 16 10 C 0.60 8.83 7.75 -12.86 -0.10 8.73 16 11 O -0.51 -8.23 14.58 5.19 0.08 -8.15 16 12 N -0.71 -9.69 4.23 -55.11 -0.23 -9.92 16 13 C 0.15 2.00 2.78 -67.93 -0.19 1.81 16 14 C -0.13 -1.89 5.60 -26.73 -0.15 -2.04 16 15 C -0.13 -2.38 5.34 -26.74 -0.14 -2.52 16 16 C 0.18 3.42 2.77 -67.93 -0.19 3.24 16 17 N -0.73 -17.91 5.12 -53.43 -0.27 -18.18 16 18 C -0.23 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 22 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 27 C -0.12 -1.53 5.61 -26.73 -0.15 -1.68 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.07 0.64 7.27 -51.93 -0.38 0.26 16 32 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 33 H 0.02 0.17 8.12 -51.93 -0.42 -0.25 16 34 H 0.09 1.17 7.24 -51.93 -0.38 0.79 16 35 H 0.04 0.40 8.03 -51.93 -0.42 -0.02 16 36 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.40 5.39 6.63 -40.82 -0.27 5.12 16 39 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.00 7.60 -51.93 -0.39 0.61 16 44 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 45 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.85 6.51 -51.93 -0.34 0.51 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -32.30 399.97 -9.19 -41.49 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -8.34 Total: 11.32 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.03 Total: -3.53 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.95 Total: -62.67 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.13 Total: -10.10 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.30 -9.19 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026550261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.384 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds