Wall clock time and date at job start Tue Mar 31 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 110.99927 * 2 1 4 4 C 1.46901 * 110.99743 * 123.95177 * 2 1 3 5 5 C 1.50696 * 109.47261 * 163.94692 * 4 2 1 6 6 C 1.40366 * 126.64707 * 104.68158 * 5 4 2 7 7 C 1.35129 * 107.11585 * 179.84254 * 6 5 4 8 8 O 1.33933 * 108.76666 * 0.42487 * 7 6 5 9 9 C 1.34910 * 109.38254 * 359.73159 * 8 7 6 10 10 C 1.46662 * 125.98590 * 179.97438 * 9 8 7 11 11 O 1.21694 * 119.99951 * 185.20952 * 10 9 8 12 12 N 1.34776 * 119.99765 * 5.21738 * 10 9 8 13 13 C 1.46501 * 119.99534 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47155 * 274.99199 * 13 12 10 15 15 C 1.52995 * 109.47499 * 300.00476 * 14 13 12 16 16 C 1.52997 * 109.47138 * 299.99901 * 15 14 13 17 17 N 1.46499 * 109.47207 * 180.02562 * 16 15 14 18 18 C 1.36931 * 120.00234 * 84.99994 * 17 16 15 19 19 H 1.07996 * 120.00255 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00103 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00240 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46744 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46884 * 119.99732 * 22 20 18 25 25 H 1.48500 * 109.47226 * 239.99969 * 22 20 18 26 26 C 1.53002 * 109.47200 * 59.99591 * 16 15 14 27 27 C 1.52995 * 109.47409 * 300.00243 * 26 16 15 28 28 H 1.08996 * 109.47311 * 296.04688 * 1 2 3 29 29 H 1.08995 * 109.47005 * 56.05159 * 1 2 3 30 30 H 1.09003 * 109.47098 * 176.04945 * 1 2 3 31 31 H 1.08998 * 109.47096 * 183.34043 * 3 2 1 32 32 H 1.08998 * 109.47230 * 303.33911 * 3 2 1 33 33 H 1.08993 * 109.47676 * 63.33896 * 3 2 1 34 34 H 1.09004 * 109.47640 * 43.94721 * 4 2 1 35 35 H 1.09002 * 109.47198 * 283.94727 * 4 2 1 36 36 H 1.07999 * 126.44309 * 359.97438 * 6 5 4 37 37 H 1.07999 * 125.62039 * 180.12646 * 7 6 5 38 38 H 0.96997 * 120.00436 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47763 * 34.99453 * 13 12 10 40 40 H 1.09002 * 109.46635 * 60.00623 * 14 13 12 41 41 H 1.08994 * 109.47608 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47204 * 179.97438 * 15 14 13 43 43 H 1.09006 * 109.47319 * 59.99504 * 15 14 13 44 44 H 1.09001 * 109.46802 * 299.99519 * 16 15 14 45 45 H 0.97001 * 120.00101 * 264.99510 * 17 16 15 46 46 H 0.96997 * 120.00474 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.46991 * 179.97438 * 26 16 15 48 48 H 1.09006 * 109.46975 * 60.00569 * 26 16 15 49 49 H 1.09001 * 109.46882 * 300.00248 * 27 26 16 50 50 H 1.09000 * 109.47330 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4501 -1.0805 0.9014 6 6 4.5512 -0.4635 1.5155 7 6 5.6632 -1.0494 1.0195 8 8 5.2986 -1.9825 0.1305 9 6 3.9527 -2.0169 0.0441 10 6 3.1671 -2.9044 -0.8197 11 8 1.9582 -2.7790 -0.8820 12 7 3.7839 -3.8587 -1.5443 13 6 2.9990 -4.7455 -2.4068 14 6 2.4689 -5.9205 -1.5825 15 6 3.6447 -6.6976 -0.9873 16 6 4.5311 -7.2259 -2.1169 17 7 5.6566 -7.9705 -1.5469 18 6 5.5087 -9.2924 -1.2219 19 1 4.5622 -9.7861 -1.3854 20 6 6.5751 -9.9978 -0.6814 21 7 7.7285 -9.3962 -0.4817 22 14 6.3731 -11.8011 -0.2373 23 1 4.9903 -12.2378 -0.5577 24 1 7.3414 -12.6141 -1.0162 25 1 6.6271 -11.9849 1.2142 26 6 5.0612 -6.0510 -2.9412 27 6 3.8854 -5.2739 -3.5365 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0834 1.3429 -0.0599 32 1 1.5984 1.9130 -0.8585 33 1 1.6952 1.8759 0.9183 34 1 1.4349 -1.6951 1.2407 35 1 1.8944 -0.1776 2.0497 36 1 4.5162 0.3290 2.2484 37 1 6.6789 -0.8025 1.2911 38 1 4.7475 -3.9585 -1.4949 39 1 2.1612 -4.1920 -2.8309 40 1 1.8374 -5.5441 -0.7777 41 1 1.8845 -6.5801 -2.2240 42 1 3.2670 -7.5344 -0.3997 43 1 4.2288 -6.0378 -0.3456 44 1 3.9471 -7.8858 -2.7585 45 1 6.5067 -7.5271 -1.3998 46 1 8.4738 -9.8892 -0.1043 47 1 5.6930 -6.4274 -3.7457 48 1 5.6452 -5.3911 -2.2995 49 1 3.3014 -5.9338 -4.1781 50 1 4.2630 -4.4366 -4.1234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026550261.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:01 Heat of formation + Delta-G solvation = -30.870161 kcal Electronic energy + Delta-G solvation = -29900.867926 eV Core-core repulsion = 25928.908656 eV Total energy + Delta-G solvation = -3971.959270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.66182 -41.01285 -39.15064 -38.31928 -36.26496 -34.47842 -34.06681 -32.55239 -31.68906 -31.05504 -29.27082 -28.41544 -28.08161 -25.67821 -24.37994 -23.47780 -23.06680 -22.56792 -22.14873 -20.82785 -20.14300 -19.22246 -19.02043 -17.41845 -17.21079 -16.93083 -16.69588 -16.21247 -16.13299 -16.07650 -15.71072 -15.51634 -15.32932 -15.14763 -14.74911 -14.61841 -14.20270 -13.88149 -13.83248 -13.57385 -13.39021 -13.14774 -13.08552 -13.07378 -12.84704 -12.78540 -12.67798 -12.55394 -12.41140 -12.11067 -12.01768 -11.99967 -11.69802 -11.30619 -11.12298 -11.08503 -10.82562 -10.77731 -10.04872 -9.52655 -9.20377 -8.97060 -7.92927 -5.20096 0.11051 1.42285 1.46667 1.46928 1.56781 1.79630 2.18574 2.37148 2.56714 3.18525 3.40226 3.69842 3.74569 3.81009 3.89363 3.91638 3.97329 4.28756 4.32727 4.33744 4.36639 4.40691 4.49972 4.53630 4.56794 4.61773 4.67179 4.68587 4.71677 4.77516 4.83127 4.95522 5.00902 5.03429 5.04845 5.06274 5.12473 5.17911 5.26899 5.30896 5.41201 5.49139 5.56834 5.59106 5.66116 5.90768 6.10188 6.19239 6.30475 6.55570 7.17139 7.36009 8.14078 8.36378 9.30837 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002685 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.433009 B =10427.360519 C =11086.614589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.550 5.550 3 C 0.028 3.972 4 C 0.128 3.872 5 C -0.094 4.094 6 C -0.227 4.227 7 C 0.003 3.997 8 O -0.176 6.176 9 C -0.090 4.090 10 C 0.597 3.403 11 O -0.529 6.529 12 N -0.708 5.708 13 C 0.154 3.846 14 C -0.118 4.118 15 C -0.120 4.120 16 C 0.174 3.826 17 N -0.737 5.737 18 C -0.233 4.233 19 H 0.072 0.928 20 C -0.078 4.078 21 N -0.969 5.969 22 Si 0.967 3.033 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.296 1.296 26 C -0.116 4.116 27 C -0.110 4.110 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.179 0.821 37 H 0.248 0.752 38 H 0.405 0.595 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.043 0.957 45 H 0.372 0.628 46 H 0.249 0.751 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.094 0.906 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 24.096 0.175 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.274 5.274 3 C -0.120 4.120 4 C 0.001 3.999 5 C -0.097 4.097 6 C -0.246 4.246 7 C -0.066 4.066 8 O -0.072 6.072 9 C -0.143 4.143 10 C 0.384 3.616 11 O -0.408 6.408 12 N -0.359 5.359 13 C 0.050 3.950 14 C -0.157 4.157 15 C -0.160 4.160 16 C 0.066 3.934 17 N -0.377 5.377 18 C -0.365 4.365 19 H 0.090 0.910 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.797 3.203 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.223 1.223 26 C -0.154 4.154 27 C -0.148 4.148 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.196 0.804 37 H 0.264 0.736 38 H 0.242 0.758 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.113 0.887 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.681 23.555 -0.511 25.869 hybrid contribution 0.760 -0.697 1.579 1.886 sum -9.922 22.859 1.068 24.942 Atomic orbital electron populations 1.22287 0.86184 1.02027 1.00810 1.61760 1.08679 1.14102 1.42864 1.22401 1.00595 0.88044 1.00984 1.20372 0.89282 0.98400 0.91889 1.20649 0.97320 0.95339 0.96416 1.21999 0.90628 1.05625 1.06386 1.25208 1.02210 0.88870 0.90309 1.84094 1.21987 1.49650 1.51439 1.21926 0.80871 1.05144 1.06333 1.16695 0.86362 0.79471 0.79120 1.90831 1.12980 1.71632 1.65360 1.46069 1.11607 1.33147 1.45118 1.20992 0.94372 0.89583 0.90037 1.21838 0.97187 0.96857 0.99829 1.21994 0.96849 0.98079 0.99074 1.20457 0.88466 0.91960 0.92544 1.42651 1.11304 1.08366 1.75342 1.19628 0.96627 0.87921 1.32296 0.90968 1.25495 0.95972 1.02178 1.03335 1.69810 1.02754 1.37016 1.52503 0.85154 0.77539 0.80703 0.76904 1.19213 1.22018 1.22338 1.21694 0.98157 0.96393 0.99197 1.21744 0.96154 1.00405 0.96503 0.94860 0.90729 0.92391 0.92006 0.90975 0.94692 0.91058 0.92431 0.80360 0.73562 0.75836 0.88972 0.93093 0.89834 0.94844 0.94142 0.93844 0.79679 0.94168 0.91783 0.92640 0.88732 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.54 127.69 1.22 1.87 16 2 N -0.55 -11.95 4.62 -953.50 -4.40 -16.35 16 3 C 0.03 0.46 9.40 127.69 1.20 1.66 16 4 C 0.13 2.84 4.50 85.56 0.39 3.22 16 5 C -0.09 -2.18 4.92 -19.74 -0.10 -2.28 16 6 C -0.23 -3.85 10.58 22.07 0.23 -3.62 16 7 C 0.00 0.05 12.08 67.10 0.81 0.86 16 8 O -0.18 -4.22 10.41 -5.02 -0.05 -4.27 16 9 C -0.09 -2.43 7.12 24.07 0.17 -2.26 16 10 C 0.60 17.68 7.75 86.44 0.67 18.35 16 11 O -0.53 -17.51 14.58 -4.33 -0.06 -17.57 16 12 N -0.71 -19.09 4.23 -446.50 -1.89 -20.98 16 13 C 0.15 3.92 2.78 44.99 0.13 4.04 16 14 C -0.12 -3.42 5.60 30.59 0.17 -3.25 16 15 C -0.12 -4.35 5.34 30.59 0.16 -4.19 16 16 C 0.17 6.66 2.77 44.99 0.12 6.79 16 17 N -0.74 -36.95 5.12 -322.95 -1.65 -38.61 16 18 C -0.23 -12.97 9.93 84.03 0.83 -12.13 16 19 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 22 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 26 C -0.12 -3.49 5.22 30.59 0.16 -3.33 16 27 C -0.11 -2.50 5.61 30.59 0.17 -2.33 16 28 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 30 H 0.06 1.25 8.09 -2.39 -0.02 1.24 16 31 H 0.06 1.07 7.27 -2.39 -0.02 1.06 16 32 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 34 H 0.07 1.86 7.24 -2.38 -0.02 1.84 16 35 H 0.06 1.04 8.03 -2.39 -0.02 1.02 16 36 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.25 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.41 10.72 6.63 -92.71 -0.61 10.11 16 39 H 0.09 2.31 7.58 -2.39 -0.02 2.30 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.55 7.60 -2.38 -0.02 1.54 16 44 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 45 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 46 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.05 1.67 6.51 -2.38 -0.02 1.66 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.08 399.97 0.66 -70.41 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -0.40 Total: 38.58 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.81 Total: -0.63 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -7.66 Total: -135.22 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.12 Total: -21.84 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -71.08 0.66 -70.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026550261.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.544 kcal (2) G-P(sol) polarization free energy of solvation -71.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds